Sequence of DPV Lettuce infectious yellows virus

Lettuce infectious yellows virus defective RNA 2 haplotype M5 P5 and P26 genes, complete cds.

ACC No: AF229380

Dated: 2000-05-23 | Length: 1897 | CRC: -617555793

                !!NA_SEQUENCE 1.0
ID   AF229380   standard; RNA; VRL; 1897 BP.
XX
AC   AF229380;
XX
SV   AF229380.1
XX
DT   27-APR-2000 (Rel. 63, Created)
DT   23-MAY-2000 (Rel. 63, Last updated, Version 2)
XX
DE   Lettuce infectious yellows virus defective RNA 2 haplotype M5 P5 and P26
DE   genes, complete cds.
XX
KW   .
XX
OS   Lettuce infectious yellows virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Closterovirus.
XX
RN   [1]
RP   1-1897
RA   Rubio L., Yeh H.H., Tian T., Falk B.W.;
RT   "A heterogeneous population of defective RNAs is associated with Lettuce
RT   infectious yellows virus (LIYV)";
RL   Virology 271:205-212(2000).
XX
RN   [2]
RP   1-1897
RA   Rubio L., Yeh H.H., Tian T., Falk B.W.;
RT   ;
RL   Submitted (31-JAN-2000) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, University of California Davis, 1 Shields Ave., Davis, CA
RL   95616, USA
XX
DR   SPTREMBL; Q9ICD2; Q9ICD2.
DR   SPTREMBL; Q9IZR1; Q9IZR1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1897
FT                   /chromosome="RNA 2"
FT                   /db_xref="taxon:31713"
FT                   /haplotype="M5"
FT                   /note="defective RNA segment"
FT                   /organism="Lettuce infectious yellows virus"
FT   CDS             327. .446
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9ICD2"
FT                   /product="P5"
FT                   /protein_id="AAF65754.1"
FT                   /translation="MSILLFFLMSILVWFIFTILKLLFVNTDSEVNIPNKSRF"
FT   CDS             1023. .1706
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9IZR1"
FT                   /product="P26"
FT                   /protein_id="AAF65755.1"
FT                   /translation="MNNFPEIFDDESTCDYDKEIDHQELSDTFWCLMDFISSKHGKSVA
FT                   DINSGMNTLINIRKCLNGSGKVVSITDSYNKTYFHSQRGLTNVDSRINIDILKTDFISI
FT                   IDDLQIIFRGLIYKDKGFLDSADLLDLDKKTTTRKFQEYFNILKIKIIEKIGMTKTFHF
FT                   NIDFRDTISPLDKQRKCSISSSHKKTNRLNDLNNYITYLNDNIVLTFRWKGVGFGGLSL
FT                   NDIKI"
XX
SQ   Sequence 1897 BP; 699 A; 257 C; 324 G; 617 T; 0 other;

AF229380  Length: 1897  December 21, 2001 14:57  Type: N  Check: 9762  ..

       1  ggtaatcaca attaccattg ggcgaaggcc aggtgtgccg taaacctaaa
      51  atatgattgt gttacggatc ctactctttt gagtagttac attatgttat
     101  gttaagatcc ttgcgtctac tcttggagaa tttcgatggc acttgagtga
     151  cgtaagttac tttttctccc taaaatccaa aatcccaaaa atccaaattt
     201  tagttaatag cagtagctgt cgcaaaccgt accctaccct aattaaaact
     251  agactatgct gcgaatacta agagcggatt aaatctgctc gcttagagaa
     301  ctctcaggtc ttctctagta taggtcatgt cgatattatt attttttctt
     351  atgtccatat tagtatggtt tatttttacc attttaaagt tattatttgt
     401  aaatactgat agtgaagtaa atataccgaa taaaagtaga ttttagaagt
     451  ttccataatt tgtaataagt attttatcaa taaaaagtag agtgataagt
     501  ctgttaataa aattttatta atgtgcaggt atattgtaaa accaaaaata
     551  aaaacagttt ctttaagtta gaataaaagt ttttctaaaa tttaaaaatt
     601  tatgtttatt ttttatttag tatatctttt tcgacttcaa aagaaaatct
     651  taacaatatc actaacaata ttgttgtaga gaatgacaaa ggtgggtttg
     701  taaaaatttt aaaaatagat tacttgaaca aactgtacgg ttcgattcct
     751  gagtcgcata cttacaattt agaaagagtt ctactaagac attatgctca
     801  agaaatctta atattactaa gaagcaaagt gttagaatgg cctaggaaat
     851  tagcaagaaa taagggcatt ttcgaacaat atacctacat ggcctgtgac
     901  tttttcgaca ccgcagaatt agaattgacg gaggctgaga ccacagcttt
     951  gacgacggta aagtcttgga ctatgaacca ttataagaag aaaagacaga
    1001  tagttaatag ttcacaatta gaatgaataa ttttcctgaa atttttgatg
    1051  atgaatccac atgcgactat gataaagaga tagatcacca agaactatca
    1101  gatacctttt ggtgtttgat ggatttcatc tcttctaaac atgggaaaag
    1151  tgtcgctgat ataaattcag ggatgaatac tttgattaac attagaaagt
    1201  gcctcaatgg aagtggtaaa gttgtgtcga taactgatag ttacaataaa
    1251  acttatttcc acagtcaaag aggattgacc aatgttgact caaggataaa
    1301  catagatata ttgaagacag atttcattag tattattgac gatcttcaaa
    1351  taatatttag aggtttaatt tacaaagata aaggttttct agatagtgcg
    1401  gacttgttag atttagataa gaaaacaact actagaaaat ttcaagaata
    1451  tttcaatatt ctaaaaataa aaatcataga gaaaattgga atgacaaaaa
    1501  cattccattt caatatagat tttagagaca cgatctctcc tttagataag
    1551  caaaggaaat gttcaatttc aagttctcat aagaaaacca acagattgaa
    1601  cgatctcaat aattatataa catatctaaa tgataatatt gtgttgacat
    1651  ttagatggaa aggagtagga ttcggaggac tatcattaaa tgatataaaa
    1701  atttaaaaca caagcgggta agttggataa ggtaatatcc gcaaggtcga
    1751  atagggtttg tattaatcag actatttgta aatccttaaa agagacatga
    1801  acgataattc aatttgatca gagagtggtg attgaattat tcgatgataa
    1851  atggtttaaa accatttatc attctagtgt atctcgtata ctagacc