Sequence of DPV Lettuce infectious yellows virus
Lettuce infectious yellows virus defective RNA 2 haplotype M30 P5, coat protein minor, and P26 genes, complete cds.
ACC No: AF229381
Dated: 2000-05-23 | Length: 3548 | CRC: 920464128
!!NA_SEQUENCE 1.0
ID AF229381 standard; RNA; VRL; 3548 BP.
XX
AC AF229381;
XX
SV AF229381.1
XX
DT 27-APR-2000 (Rel. 63, Created)
DT 23-MAY-2000 (Rel. 63, Last updated, Version 2)
XX
DE Lettuce infectious yellows virus defective RNA 2 haplotype M30 P5, coat
DE protein minor, and P26 genes, complete cds.
XX
KW .
XX
OS Lettuce infectious yellows virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
XX
RN [1]
RP 1-3548
RA Rubio L., Yeh H.H., Tian T., Falk B.W.;
RT "A heterogeneous population of defective RNAs is associated with Lettuce
RT infectious yellows virus (LIYV)";
RL Virology 271:205-212(2000).
XX
RN [2]
RP 1-3548
RA Rubio L., Yeh H.H., Tian T., Falk B.W.;
RT ;
RL Submitted (31-JAN-2000) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, University of California Davis, 1 Shields Ave., Davis, CA
RL 95616, USA
XX
DR SPTREMBL; Q9IZQ8; Q9IZQ8.
DR SPTREMBL; Q9IZQ9; Q9IZQ9.
DR SPTREMBL; Q9IZR0; Q9IZR0.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3548
FT /chromosome="RNA 2"
FT /db_xref="taxon:31713"
FT /haplotype="M30"
FT /note="defective RNA segment"
FT /organism="Lettuce infectious yellows virus"
FT CDS 327. .446
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IZR0"
FT /product="P5"
FT /protein_id="AAF65756.1"
FT /translation="MSILLFFLMSILVWFIFTILKVLFVNTDSEVNIPNKSRF"
FT CDS 1319. .2677
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IZQ9"
FT /note="CPm"
FT /product="coat protein minor"
FT /protein_id="AAF65757.1"
FT /translation="MLEAECDEVELTSRDVGDYLMFKTRITDNFTGDLTLNINTSNLIK
FT FKTCSFFICYGDDKDRYELGWTSTSTSRSIFQHYKDGKYIRDFRIQDPFPILSGSTFPV
FT VISNIIANRVAFRMSRRLNNVIVDKLKNNIIEFLLVVYLDVDTGKIKPNTILKNLDLSS
FT LFIVFSNNGNNKINLPYEIELQTKDRGIVYTKMGNPISYNLFNKFEDLLGIETKGVDKP
FT EDKPKPVFDDKGKQPTDTVPPVDDGKPDISKPGEKQGDIDVASKFNNIVMAKLKAQSSS
FT DPLTKKQCDQLMLSLIKWFEKFGITKDNARLLIFQFGISFSTSKENLNNITNNIVVEND
FT KGGFVKILKIDYLNKLYGSIPESHTYNLERVLLRHYAQEILILLRSKVLEWPRKLARNK
FT GIFEQYTYMACDFFDTAELELTEAETTALTTVKSWTMNHYKKKRQIVNSSQLE"
FT CDS 2674. .3357
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IZQ8"
FT /product="P26"
FT /protein_id="AAF65758.1"
FT /translation="MNNFPEIFDDESTCDYDKEIDHQELSDTFWCLMDFISSKHGKSVA
FT DINSGMNTLINIRKCLNGSGKVVSIADSYNKTYFHSQRGLTNVDSRINIDILKIDFISI
FT IDDLQIIFRGLIYKDKGFLDSADLLDLDKKTTTRKFQEYFNILKIKIIEKIGMTKTFHF
FT NIDFRNTISPLDKQRKCSISSSHKKTNRLNDLNNYITYLNDNIVLTFRWKGVGFGGLSL
FT NDIKI"
XX
SQ Sequence 3548 BP; 1288 A; 523 C; 657 G; 1080 T; 0 other;
AF229381 Length: 3548 December 21, 2001 14:57 Type: N Check: 9377 ..
1 ggtaatcaca attaccattg ggcgaaggcc aggtgtgccg taaacctaaa
51 atatgattgt gttacggatc ctactctttt gagtagttac attatgttat
101 gttaagatcc ttgcgtctac tcttggagaa tttcgatggc acttgagtga
151 cgtaagttac tttttctccc taaaatccaa aatcccaaaa atccaaattt
201 tagttaatag cagtagctgt cgcaaaccgt accctaccct aattaaaact
251 agactatgct gcgaatacta agagcggatt aaatctgctc gcttagagaa
301 ctctcaggtc ttctctagta taggtcatgt cgatattatt attttttctt
351 atgtccatat tagtatggtt tatttttacc attttaaagg tattatttgt
401 aaatactgat agtgaagtaa atataccgaa taaaagtaga ttttagaagt
451 ttccatagtt tgtaataagt attttatcaa taaaaagtag agtgataagt
501 ctgttaataa aattttatta atgtgcaggt atattgtaaa accaaaaata
551 aaaacagttt ctttaagtta gaataaaagt ttttctaaaa tttaaaaatt
601 tatgtttatt ttttatttgt cgatatcgta atgatgataa gaagaaagag
651 gaaatgaaac aaaacatttc tgacaattct caaatcatat caaccaggga
701 tcatgaagct gacatcattg gaagtatatc gaaagaggat ttgtccaaaa
751 tcgttgtacg cgtcgacagg cacgatgctc tgagtgctaa tgatgttcaa
801 agttttagag aagctatgat aaacttcatg cgagacaaag accccaacag
851 aaatcaacct agtgacaaat tgattattgc tatggaagtt ggagtttatc
901 aaatggtcat aaatttgggc acttcggcta aattgggtaa tgctaacaat
951 ttagaattta cgatagctta cgaccaggaa actaggacat ataaggtcgc
1001 agattttgtg aattatatgc agtctagaat gaggaacagt ccaaatgttg
1051 ttaggcaata tgcaagagca atggaaaaga caattaacaa cataaggagt
1101 gctggaatca taaacagcaa tggagttttg gcagcgaaac atggtgtgtt
1151 ggcatcttac agaaactctt acagcgactt tgctgttggt tttggtaacg
1201 acaccactga tgctcaactc acttcgctaa tgctagctag aaaacaagca
1251 ttatgcaaag gtgaaggtgg ttcagtcgag cattacaata ctatgcagtt
1301 agctaacctt aaacatccat gttagaggcg gaatgtgatg aagtagaact
1351 aacctccaga gatgtcggag attatttgat gttcaaaacg agaataaccg
1401 ataatttcac tggagattta accttgaata taaacacctc gaacttaatc
1451 aaattcaaaa cttgtagttt ctttatatgt tatggagacg acaaggatag
1501 gtatgaattg ggttggactt caacatctac atctagaagt atttttcaac
1551 attataagga tggtaaatac attcgagatt ttagaataca agatccattt
1601 ccaattctat caggttcaac atttccagta gtgatttcta atataatagc
1651 gaatagggtt gcctttcgta tgagtagaag attaaataat gttattgttg
1701 ataagcttaa gaataacatt atagagtttc tacttgtagt atatttagat
1751 gtggatactg ggaagattaa accaaacaca atactcaaaa atttagattt
1801 gtccagtctt tttatcgttt tcagtaacaa cggaaacaat aaaatcaatc
1851 taccatatga gatagagcta cagactaaag atagaggcat tgtttacaca
1901 aaaatgggta atcctatatc ttataacctc ttcaataagt ttgaagattt
1951 attaggcata gaaaccaaag gtgtcgataa acccgaagac aaacccaaac
2001 ctgtgtttga cgacaaaggc aagcaaccca cggatacggt tcctcctgtt
2051 gacgatggca agcccgacat aagcaaacct ggtgagaaac agggagacat
2101 agatgttgct agcaagttta ataatatagt catggcaaaa ttgaaagctc
2151 aatcttcatc agatccattg acgaaaaagc aatgtgatca attgatgttg
2201 agtctaatca aatggtttga aaaatttgga atcacaaaag acaatgcccg
2251 attgctgata tttcaatttg gtatatcttt ttcgacttca aaagaaaatc
2301 ttaacaatat cactaacaat attgttgtag agaatgacaa aggtgggttt
2351 gtaaaaattt taaaaataga ttacttgaac aaactgtacg gttcgattcc
2401 tgagtcgcat acttacaatt tagaaagagt tctactaaga cattatgctc
2451 aagaaatctt aatattacta agaagcaaag tgttagaatg gcctaggaaa
2501 ttagcaagaa ataagggcat tttcgaacaa tatacctaca tggcctgtga
2551 ctttttcgac accgcagaat tagaattgac ggaggctgag accacagctt
2601 tgacgacggt aaagtcttgg actatgaacc attataagaa gaaaagacag
2651 atagttaata gttcacaatt agaatgaata attttcctga aatttttgat
2701 gatgagtcca catgcgacta tgataaagag atagatcacc aagaactatc
2751 agataccttt tggtgtttga tggatttcat ctcttctaaa catgggaaaa
2801 gtgtcgctga tataaattca gggatgaata ctttgattaa cattagaaag
2851 tgcctcaatg gaagtggtaa agttgtgtcg atagctgata gttacaataa
2901 aacttatttc cacagtcaaa gaggattgac caatgttgac tcaaggataa
2951 acatagatat attgaagata gatttcatta gtattattga cgatcttcaa
3001 ataatattta gaggtttaat ttacaaagat aaaggttttc tagatagtgc
3051 ggacttgtta gatttagata agaaaacaac tactagaaaa tttcaagaat
3101 atttcaatat tctaaaaata aaaatcatag agaaaattgg aatgacaaaa
3151 acattccatt tcaatataga ttttagaaac acgatctctc ctttagataa
3201 gcaaaggaaa tgttcaattt caagttctca taagaaaacc aacagattga
3251 acgatctcaa taattatata acatatctaa atgataatat tgtgttgaca
3301 tttagatgga aaggagtagg attcggagga ctatcattaa atgatataaa
3351 aatttaaaac acaagcgggt aagttggata aggtaatatc cgcaaggtcg
3401 aatagggttt gtattaatca gactatttgt aaatccttaa aagagacatg
3451 aacgataatt caatttgatc agagagtggt gattgaatta ttcgatgata
3501 aatggtttaa aaccatttat cattctagtg tatctcgtat actagacc