Sequence of DPV Sugarcane streak Egypt virus
Sugarcane streak Egypt virus - [Naga], complete genome.
ACC No: AF239159
Dated: 2005-04-15 | Length: 2706 | CRC: 309529136
!!NA_SEQUENCE 1.0
ID AF239159 standard; genomic DNA; VRL; 2706 BP.
XX
AC AF239159;
XX
SV AF239159.2
XX
DT 28-JUN-2000 (Rel. 64, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 5)
XX
DE Sugarcane streak Egypt virus - [Naga], complete genome.
XX
KW .
XX
OS Sugarcane streak Egypt virus - [Naga]
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
XX
RN [1]
RP 1-2706
RX DOI; 10.1016/S0166-0934(00)00272-X.
RX MEDLINE; 21102219.
RX PUBMED; 11164917.
RA Shamloul A.M., Abdallah N.A., Madkour M.A., Hadidi A.;
RT "Sensitive detection of the Egyptian species of sugarcane streak virus by
RT PCR-probe capture hybridization (PCR-ELISA) and its complete nucleotide
RT sequence";
RL J. Virol. Methods 92(1):45-54(2001).
XX
RN [2]
RP 1-2706
RA Shamloul A.-M.M., Hadidi A.F., Madkour M.A., Abdallah N.A.;
RT ;
RL Submitted (24-FEB-2000) to the EMBL/GenBank/DDBJ databases.
RL Fruit Lab, PSI, 10300 Baltimore Ave, Beltsville, MD 20705, USA
XX
CC On Jun 27, 2000 this sequence version replaced gi:8571399.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2706
FT /db_xref="taxon:268787"
FT /mol_type="genomic DNA"
FT /organism="Sugarcane streak Egypt virus - [Naga]"
FT /strain="Naga Hammady"
FT gene 132. .449
FT /gene="V1"
FT CDS 132. .449
FT /codon_start=1
FT /db_xref="InterPro:IPR002621"
FT /db_xref="UniProt/TrEMBL:Q9IH25"
FT /gene="V1"
FT /product="putative movement protein"
FT /protein_id="AAF76870.1"
FT /translation="MDGSGGALPALPQSVLPRVPSPPPSAGELPWSRVGEIVIFTFVAL
FT VALYLLWLWVLRDLIFLVKARRGISTEEVSFGTSDLVVSQAPTPVGVSASCPPGPVPFT
FT A"
FT gene 466. .1209
FT /gene="V2"
FT CDS 466. .1209
FT /codon_start=1
FT /db_xref="GOA:Q9IH24"
FT /db_xref="InterPro:IPR000143"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="UniProt/TrEMBL:Q9IH24"
FT /note="CP"
FT /gene="V2"
FT /product="coat protein"
FT /protein_id="AAF76871.2"
FT /translation="MPLAGSKRKRADEVAWSKRGTKKKPERTSAARAGPSRRIRPPLQI
FT ATFVAAGQSMVSVPSGGVCELLGSYARGADEANRHTNETVTYKVALDYHFVATAAACRY
FT SSVGTGVAWLVYDAQPTGNTPTTKDIFGYSDSLVAFPYTWKVSREVCHRFVVKRRCTFT
FT METDGRIGSDVPPANTSWPPCKRAIYFHKFFTGLGVKTEWKNLTDGGVGAIKKGALYLV
FT IAPGNGLEFTCHGQARLYFKSVGNQ"
FT gene complement(1409. .1816)
FT /gene="C2"
FT CDS complement(1409. .>1816)
FT /codon_start=1
FT /db_xref="GOA:Q9IH23"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="UniProt/TrEMBL:Q9IH23"
FT /gene="C2"
FT /product="RepB"
FT /protein_id="AAF76869.2"
FT /translation="RIQNIPGHRKQSLYILGPTRTGKSTWARSLGRHNYWQNNVDWSSY
FT DEEAVYNIIDDIPFKFCPCWKQLVGCQKEYVVNPKYGKKKKVASKSIPSIILANEDEDW
FT LTVMTPGQREYFEANAVIYIMTAGEKFYKPA"
FT gene complement(1726. .2556)
FT /gene="C1"
FT CDS complement(1726. .2556)
FT /codon_start=1
FT /db_xref="GOA:Q9IH22"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001146"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="UniProt/TrEMBL:Q9IH22"
FT /gene="C1"
FT /product="RepA"
FT /protein_id="AAF76868.1"
FT /translation="MTTVGSAESGSAIRSFKHRNVNTFLTYPKCHLEPEAVGLHLWSLI
FT GHWNPAYIVVSREAHADGSWHIHALAQSVKPVQTTNPRFFDIEDFHPNIQSAKSADRVK
FT EYVLKNPIKQWEKGTFIPRKKSFATTSSEDRQPKPTKDDIVRDIIEHSTSKQEYLSMIQ
FT KALPYEWATKLQYFEYSASRLFPETAEVYTNPHPPTEPDLINFETIEDWLNPNIYQVSP
FT EAYMLLTPTCLTLEEAISDLEWMQSASRTSQGTGNSLCTSLGQQEQGNQHGPEA"
XX
SQ Sequence 2706 BP; 564 A; 646 C; 761 G; 735 T; 0 other;
AF239159 Length: 2706 April 19, 2005 08:53 Type: N Check: 7286 ..
1 accgcgctct ctcatgcgag gcccaccagg ccgagcggtc ctgctttggt
51 gccttatgtc ttttgttaaa gcctgtatgt aataaggcgc tttggatcgc
101 atataagttc gtccccaggc tcagtggtgc tatggacggc tctggaggag
151 cgttgcctgc tttgcctcaa agtgttctgc cgcgggtacc ctcgccacct
201 ccgtctgccg gagagctgcc gtggagtcgc gtcggtgaga tagtgatttt
251 cacctttgtt gctttggtag ctttgtacct gttatggttg tgggtgctga
301 gagatcttat cttccttgtt aaggctcgcc gcgggatctc aacggaggag
351 gtgagctttg gtacgtcaga tctggttgtt tcgcaggctc caacgccggt
401 cggtgtctct gctagctgtc cgccgggacc tgtgccgttc acggcctagg
451 tagccctcag ccaccatgcc tcttgccggc agcaaaagga agagggccga
501 tgaggtggcc tggtctaagc gtggcactaa gaagaagcca gagcgtacat
551 ctgccgctcg ggctggtccg tctaggcgga ttcgtccacc cttgcagata
601 gccacgtttg tggcagccgg tcagtctatg gtgtctgtcc cttccggtgg
651 ggtttgtgaa ctgctgggct cctatgctcg aggcgctgac gaggccaacc
701 gtcacaccaa cgagactgtc acgtacaagg ttgccttgga ctaccacttc
751 gttgctactg cagccgcctg caggtattcc agcgttggca ctggcgtggc
801 ctggttggtg tatgatgcac agcctaccgg aaataccccg acgacgaagg
851 acatcttcgg ctatagtgac tcccttgtgg cgttccccta cacatggaag
901 gtttcaaggg aggtgtgtca tcgcttcgtg gtgaagagga gatgcacttt
951 cacgatggag accgacggtc ggattgggtc ggatgttcct ccggcgaata
1001 cctcatggcc gccttgtaag cgggcgattt acttccataa gttcttcact
1051 ggcctgggtg tgaagacgga gtggaagaat ctcacagacg gtggtgtggg
1101 agcgattaag aagggtgcgt tgtacctggt cattgcccct ggcaatggtc
1151 tagagtttac ctgccatggg caggcccgtc tgtacttcaa atcagttggg
1201 aatcagtgat tccctacaga ataataaaac aagttttata atttcattga
1251 tattggacga agtacaatac aggatacaat gtctgcagat gtgcagacga
1301 caacattaaa ctggttttgt gtgtcgcgag ggggaacccg gagcacgctc
1351 ccaaaacacc caacacacac acacccaact gaagattatt gaacatgcag
1401 ccgccggcct aagcaggctt gtagaacttc tcgcctgctg tcataatgta
1451 tatgaccgcg tttgcctcga agtactcccg ttgtccggga gtcatcaccg
1501 tcagccagtc ctcatcctcg ttggctagga ttattgatgg aatgctcttg
1551 gaagctacct tcttcttctt accgtacttc gggttgacga cgtactcttt
1601 ctggcagcca accagctgct tccagcaagg acagaatttg aagggtatat
1651 catctatgat gttgtagact gcttcctcat cataggaaga ccagtcgaca
1701 ttattctgcc agtagttgtg gcgccctagg cttctggccc atgttgattt
1751 ccctgttctt gttggcccaa ggatgtacag agactgtttc ctgtgccctg
1801 ggatgttctg gatgcggatt gcatccattc taagtcagag attgcttcct
1851 caagggttaa gcaggtagga gtaagcagca tgtaggcttc tggactaacc
1901 tgatagatgt tggggttgag ccaatcttct atggtttcga agtttatgag
1951 gtccggttca gtgggaggat gaggattggt gtatacttct gcagtttcag
2001 ggaacaatct ggaggctgag tactcaaagt actggagctt cgttgcccac
2051 tcgtagggga gtgccttctg aatcatggaa aggtactctt gcttggaggt
2101 ggagtgttcg atgatatctc tcacgatatc atcttttgtg ggtttaggtt
2151 gcctatcctc agatgaagtg gtagcaaagg atttcttgcg tgggatgaaa
2201 gtacctttct cccattgttt gatcgggttt ttgagcacgt attccttgac
2251 cctgtctgcg gacttggcac tctgaatgtt aggatggaaa tcctcaatgt
2301 caaagaacct agggttcgta gtttgcacag gcttgacgct ctgagctaag
2351 gcatggatat gccaggatcc atcagcatga gcttcccggc tcacgacgat
2401 gtaagctgga ttccagtgac ctatgagact ccagagatgg agccctacag
2451 cttcaggttc tagatggcac ttcggatatg tgaggaatgt gtttacgttc
2501 ctgtgcttga aggaacggat ggcagagcct gactctgctg atcctacggt
2551 tgtcatggct gggcgagagg tctgattctg agtctcaact aactctccta
2601 caggtttgcg aatcgaaatc cgacctcccg tcttatatag aaggttagtt
2651 gggccgggcc gcaatttttt gtgggccgca atgagagagc gcaaaccgtt
2701 aatatt