Sequence of DPV Cotton leaf curl Gezira virus
Cotton leaf curl Gezira virus-[Cotton] A component, complete genome.
ACC No: AF260241
Dated: 2005-11-29 | Length: 2761 | CRC: 253116514
ID AF260241 standard; circular genomic DNA; VRL; 2761 BP.
XX
AC AF260241;
XX
SV AF260241.1
XX
DT 02-AUG-2000 (Rel. 64, Created)
DT 29-NOV-2005 (Rel. 85, Last updated, Version 7)
XX
DE Cotton leaf curl Gezira virus-[Cotton] A component, complete genome.
XX
KW .
XX
OS Cotton leaf curl Gezira virus-[Cotton]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2761
RA Brown J.K., Idris A.M., Olsen M.W., Miller M.E., Isakeit T., Anciso J.;
RT "Cucurbit leaf curl virus, a new whitefly-transmitted geminivirus in
RT Arizona, Texas, and Mexico";
RL Plant Dis. 84:809-809(2000).
XX
RN [2]
RP 1-2761
RA Idris A.M., Brown J.K.;
RT "Molecular analysis of cotton leaf curl virus-Sudan reveals an evolutionary
RT history of recombination";
RL Virus Genes 0:0-0(2002).
XX
RN [3]
RP 1-2761
RA Brown J.K., Idris A.M.;
RT "Genetic Differentiation of Whitefly Bemisia tabaci Mitochondrial
RT Cytochrome Oxidase I, and Phylogeographic Concordance with the Coat Protein
RT of the Plant Virus Genus Begomovirus";
RL Ann. Entomol. Soc. Am. 98(6):827-837(2005).
XX
RN [4]
RP 1-2761
RA Idris A.M., Brown J.K.;
RT ;
RL Submitted (24-APR-2000) to the EMBL/GenBank/DDBJ databases.
RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .2761
FT /country="Sudan:Gezira"
FT /db_xref="taxon:222460"
FT /mol_type="genomic DNA"
FT /note="monopartite"
FT /virion
FT /organism="Cotton leaf curl Gezira virus-[Cotton]"
FT /isolate="CLCuV-SD"
FT /specific_host="cotton"
FT /segment="A component"
FT CDS 160. .528
FT /codon_start=1
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q77M73"
FT /note="movement protein"
FT /product="V2"
FT /protein_id="AAF91374.1"
FT /translation="MWDPLVNDFPESVHGFRCMLAVKYLQAVRESYDPSTLGYDLLSDL
FT IGVVRRTNYVEATSRYHHFHSRLESASPSELRQPRVILCTCPHCPRHKQASVLDQQAHV
FT QKTEDVPNVSQPRCPKGM"
FT CDS 320. .1096
FT /codon_start=1
FT /db_xref="GOA:Q8V6I9"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q8V6I9"
FT /note="coat protein; Cp"
FT /product="V1"
FT /protein_id="AAF91375.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPGLSSARAPTVLVTNKRRSW
FT TNRPTYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTKGVGITH
FT RTGKRFTIKSIYILGKVWMDDNIKKQNHTNNVMFFLVRDRRPYGNSPLDFGQVFNMFDN
FT EPSTATVKNDLRDHFQVLRKFTATVIGGPSGMKEQALVRRFFRINSQIVYNHQEAGKFE
FT NHTENAILLYMACTHASNPVYATLKIRIYFYDSVSN"
FT CDS complement(1093. .1494)
FT /codon_start=1
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q77M72"
FT /note="replication enhancement protein; ReN"
FT /product="C3"
FT /protein_id="AAF91378.1"
FT /translation="MDSRTGELITAHQTENGVLIWTINNPLYFKTIKEIPLTHGNQTMV
FT EMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKYLYRLGVISINNV
FT IRAVNHVLYDVLQTTVASEFTHNIQIKLY"
FT CDS complement(1238. .1642)
FT /codon_start=1
FT /db_xref="GOA:Q77M71"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:Q77M71"
FT /note="transcription activation protein; TrAp"
FT /product="C2"
FT /protein_id="AAF91377.1"
FT /translation="MRPSSPSQIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAF
FT TCRDNGFTHRGTHHCASDREWRTYLDNQQSPVFQNHKGDSSNARESNNGRDADKIQLQP
FT QEGIGDSQMFHELQGLDDLTPSDWSFLKRI"
FT CDS complement(1542. .2630)
FT /codon_start=1
FT /db_xref="GOA:Q8V6I8"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q8V6I8"
FT /note="replication associated protein; Rep"
FT /product="C1"
FT /protein_id="AAF91376.1"
FT /translation="MAPPHRFQIYAKNYFLTFPKCSLTKEEALEQLQQISTASNKKYIK
FT ICRELHEDGQPHLHVLLQFEGKFKCQNQRLFDLVSPNRSTHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKAEALRVIRELAPKDFVLQFH
FT NLNSNLERIFQEPPAPYVSPFLSSSFDQVPEELEEWAAENVVDAAARPSRPISIVIEGE
FT SRTGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQKDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNAHLKSWALKNATFITLSNPL
FT YSGTNQSSASGGEEESNQETQD"
XX
SQ Sequence 2761 BP; 692 A; 611 C; 614 G; 844 T; 0 other;
AF260241 Length: 2761 29-NOV-2005 Type: N Check: 3930 ..
1 accggtgggc gcgaaaaaaa aaagtggtcc ccgccccacg tgaacatgtc
51 gcgcgagtgc tgtacatgtc gcgcgatgct gtccaatcag aacgcgcgct
101 ctacgcatta taatttgaaa tttgaatata aacttgggcg ctaagtagtt
151 gaaattaaaa tgtgggatcc tttggttaac gacttccctg aatccgttca
201 cggtttccgt tgtatgctag ccgtgaaata tttgcaggct gttcgagagt
251 cgtacgatcc ttctactctt gggtacgatc ttcttagcga tctcatcgga
301 gttgttcgcc gtaccaacta tgtcgaagcg accagcagat atcatcattt
351 ccactcccgc ctcgaaagtg cgtcgccgtc tgaacttcga cagccccggg
401 ttatcctctg cacgtgcccc cactgtcctc gtcacaaaca agcgtcggtc
451 ctggaccaac aggcccacgt acagaaaacc gaggatgtac cgaatgtatc
501 gcagcccaga tgtcccaaag ggatgtgaag gtccttgtaa ggttcaatct
551 tatgaacagc gtgatgatat caagcatacg ggtattgttc gatgtgtgtc
601 ggatgttact aagggtgttg gtattactca tcgtactgga aagcgtttca
651 ctatcaaatc catttatatt cttggtaagg tatggatgga tgacaacatt
701 aagaagcaga atcacaccaa caatgtcatg tttttccttg tccgtgatag
751 aagaccgtat gggaattccc ctttggattt tggtcaagtt tttaacatgt
801 ttgacaacga gcctagcact gctacggtga agaacgatct ccgtgatcat
851 tttcaggtat tgaggaagtt tactgcaact gttattggtg gtccttcagg
901 aatgaaagaa caagcacttg ttcgtcgttt tttcaggatt aatagtcaga
951 ttgtgtataa ccatcaagag gctgggaaat tcgagaatca tacggagaat
1001 gctatactgt tgtatatggc atgtactcat gcctcaaacc ctgtgtatgc
1051 tacgttaaag atacggatct acttctacga ttctgtatca aattaatata
1101 attttatttg aatattgtgc gtgaattcac ttgccactgt tgtttgcaat
1151 acatcgtaca aaacatgatt gactgcccta attacattgt taattgaaat
1201 tacgcctaat ctatacaaat atttcataat ctgcttccta aatacgttta
1251 agaaaagacc agtcggaggg cgtgagatcg tccagaccct gaagttcatg
1301 aaacatttgt gaatccccaa ttccttcctg aggttgtagt tgaatcttat
1351 ctgcatctct accattgttt gattcccgtg cgttagagga atctccttta
1401 tggttttgaa atacagggga ttgttgattg tccagataag tacgccattc
1451 tctgtctgat gcgcagtgat gagttcccct gtgcgtgaat ccattgtctc
1501 tgcacgtgaa ggctacgtat accgtgcaac cacaagggat gtcaatcctg
1551 cgtctcctga ttgctctctt cttcgcctcc cgatgctgaa ctttgattgg
1601 tacctgagta cagcggattt gagagggtga tgaaggtcgc attctttaat
1651 gcccaggatt tgagatgcgc gttcttttcc tcgtctaaat actctttata
1701 ggaggaattg ggacctggat tgcagaggaa gattgttggg atcccccctt
1751 taatttgaac tggtttcccg tattttgtgt tgctttgcca gtccttttgt
1801 gcccccatga actccttaaa gtgtttcaga taatgcgggt caacatcatc
1851 tatgacgtta taccatgcgt cattactgaa cacctttggg cttagatcaa
1901 gatggccgca cagataattg tgaggcccaa gacttctggc ccatacggtc
1951 tttcctgttc tgctttcccc ttcaatcact atactaatcg gtctacttgg
2001 ccgcgcagcg gcatcaacga cgttctccgc cgcccattct tcaagttctt
2051 ctggaacttg gtcgaacgaa gaagacaaaa aaggagaaac ataaggagct
2101 ggaggctcct gaaaaatcct ctctaaatta ctatttaaat tatgaaattg
2151 taaaacaaaa tctttgggag ctaactccct tataacccta agagcctctg
2201 ccttacttcc tgcgttaagc gctgcggcgt aagcgtcatt ggcggtctgc
2251 tgtcctcctc ttgcagatct tccgtcaatc tggaattctc cccattccag
2301 tgtgtctcca tccttgtcga tgtaggactt gacgtcggag ctggatttag
2351 ctccctgaat gtttggatgg aaatgtgttg acctatttgg ggagaccagg
2401 tcgaagagtc tctgattttg gcacttgaac ttcccttcga actggagaag
2451 cacatgtaga tgaggttggc catcctcgtg aagctctctg cagatcttga
2501 tatatttctt gtttgaagct gtgcttattt gttgaagttg ctctagggct
2551 tcctctttgg ttagagaaca ttttgggaaa gttaggaaat aattcttggc
2601 atatatttgg aatctgtggg gaggagccat tgacttggtc aatcggtact
2651 cagatgcttc tctccaatat atcggtactc aatatatagt gagtaccaaa
2701 tggcattttg gtaaaaatcc caataatttt gaacccccat agcgcccacc
2751 gttctaatat t