Sequence of DPV Potato leafroll virus
Potato leaf roll virus isolate 14.2 coat protein and ORF IV genes, complete cds; and readthrough protein gene, partial cds.
ACC No: AF271214
Dated: 2001-01-25 | Length: 2154 | CRC: -1785631810
!!NA_SEQUENCE 1.0
ID AF271214 standard; RNA; VRL; 2154 BP.
XX
AC AF271214;
XX
SV AF271214.1
XX
DT 25-JAN-2001 (Rel. 66, Created)
DT 25-JAN-2001 (Rel. 66, Last updated, Version 1)
XX
DE Potato leaf roll virus isolate 14.2 coat protein and ORF IV genes, complete
DE cds; and readthrough protein gene, partial cds.
XX
KW .
XX
OS Potato leaf roll virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-2154
RX PUBMED; 11125153.
RA Rouze-Jouan J., Terradot L., Pasquer F., Tanguy S.,
RA Giblot Ducray-Bourdin D.;
RT "The passage of Potato leafroll virus through Myzus persicae gut membrane
RT regulates transmission efficiency";
RL J. Gen. Virol. 82(Pt 1):17-23(2001).
XX
RN [2]
RP 1-2154
RA Terradot L., Pasquer F., Bourdin D.;
RT ;
RL Submitted (22-MAY-2000) to the EMBL/GenBank/DDBJ databases.
RL UMR BiO3P, INRA, BP29, Le Rheu 35653, France
XX
DR SPTREMBL; Q99GS4; Q99GS4.
DR SPTREMBL; Q99GS5; Q99GS5.
DR SPTREMBL; Q99GS6; Q99GS6.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2154
FT /db_xref="taxon:12045"
FT /note="poorly aphid transmissible isolate"
FT /organism="Potato leaf roll virus"
FT /isolate="14.2"
FT CDS 1. .627
FT /codon_start=1
FT /db_xref="SPTREMBL:Q99GS6"
FT /note="22 Kd major capsid protein; ORF III"
FT /product="coat protein"
FT /protein_id="AAG53597.1"
FT /translation="MSTVVVKGNVNGGAHQPRRRRRQSLRRRANRVQPVVMVTAPGQPR
FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL
FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKIYQA
FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK"
FT CDS 26. .496
FT /codon_start=1
FT /db_xref="SPTREMBL:Q99GS5"
FT /product="ORF IV"
FT /protein_id="AAG53599.1"
FT /translation="MSMVVHTNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDAEEEA
FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS
FT QASYFSSSARPLPPPPVPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKFIKRG"
FT CDS <628. .2154
FT /codon_start=1
FT /db_xref="SPTREMBL:Q99GS4"
FT /note="ORF V; start codon unknown"
FT /product="readthrough protein"
FT /protein_id="AAG53598.1"
FT /translation="VDSGSEPGPSPQPTPTPTPQKHERFIAYVGIPMLTIQARENDDQI
FT ILGSLGNQRMKYIEDENRSYTNVSSEYYSQSSMQAVPMYYFNVPKGQWSVDISCEGYQP
FT TSSTSDPNRGRSDGMIAYSNADSDYWNVGEADGVKISKLRNDNTYRQGHPELEINSCHF
FT REGQLLERDATISLHVEAPTDGRFFLVGPAVQKTAKYNYTISYGDWTDRDMELGLITVV
FT LDEHLEGTDSANRVRRPPREGHTYMASPREPEGKPVGNKPRDETPIQTQERQPDQTPSD
FT DVSDAGSVNSGGSTESLRLEFGVNSDSTYDATVDGTDWPRIPPPRHPPEPRVSGNSRTV
FT TDFSPETDLLENWDAKHFDPGYSKEDVAAATIIAHGSIQDGRSMLEKREENVKNKTSSW
FT KPPLSKAVSPAIAKLRSIRKSQPLEGGTLNKDATDGVSSIGSGSLTGGTLKRKVTIEDR
FT LLQTLTTEQRLWFENLKKTNPPAATQWLYEYQPPPQVDRNIAEKPFQGRK"
XX
SQ Sequence 2154 BP; 623 A; 548 C; 538 G; 445 T; 0 other;
AF271214 Length: 2154 December 21, 2001 14:59 Type: N Check: 839 ..
1 atgagtacgg tcgtggttaa aggaaatgtc aatggtggtg cacaccaacc
51 aagaaggcga agaaggcaat cccttcgcag gcgcgctaac agagttcagc
101 cagtggttat ggtcacggcc cctgggcaac ccaggcgccg aagacgcaga
151 agaggaggca atcgccgctc aagaagaact ggagttcccc gaggacgagg
201 ctcaagcgag acattcgtgt ttacaaagga caacctcatg ggcaactccc
251 aaggaagttt caccttcggg ccgagtctat cagactgtcc ggcattcaag
301 gatggaatac tcaaggccta ccatgagtat aagatcacaa gcatcttact
351 tcagttcgtc agcgaggcct cttccacctc ctccggttcc atcgcttatg
401 agttggaccc ccattgcaaa gtatcatccc tccagtccta cgtcaacaag
451 ttccaaatta cgaagggcgg cgccaaaatt tatcaagcgc ggatgataaa
501 cggggtagaa tggcacgatt cttctgagga tcagtgccgg atactgtgga
551 agggaaatgg aaaatcttca gataccgcag gatccttcag agtcaccatt
601 agggtggctt tgcaaaaccc caaataggta gactccggat cagagcctgg
651 tccaagccca caaccaacac ccactccaac tccccagaag cacgagcgat
701 ttattgctta cgttggcata cctatgctaa ccattcaggc cagggagaac
751 gacgaccaaa tcatattggg ttccttaggg aaccaaagga tgaaatatat
801 agaggacgag aaccggagct atacaaatgt tagctctgag tattactctc
851 aatcgagcat gcaagccgtc cctatgtatt acttcaatgt cccgaaaggg
901 caatggtcag tcgacatcag ctgtgaaggg tatcaaccca ctagcagcac
951 ctcggatcca aaccggggta ggagtgacgg gatgatcgcg tattcaaacg
1001 cggactccga ttattggaat gttggtgaag cggatggtgt aaaaatttcg
1051 aagctacgca acgataacac ctaccgccaa ggtcacccag aacttgaaat
1101 taactcgtgt cattttcgcg agggccaact ccttgaacgg gacgctacaa
1151 ttagccttca cgttgaagcg cccactgatg ggcgattctt cctcgttggt
1201 cccgctgtcc agaaaaccgc aaagtataac tatactatct catacggtga
1251 ctggacggac cgagacatgg aactggggct gatcaccgtg gtgcttgatg
1301 agcatttaga aggcactgat tcggctaaca gagtgcggcg gcccccacgg
1351 gagggccaca cctatatggc ctcgccgcgc gaaccggaag gaaaaccggt
1401 tggaaataaa ccaagggacg aaaccccgat acaaacgcag gaaagacaac
1451 ctgatcaaac tccgtctgac gacgtatccg atgctggttc ggtaaacagc
1501 ggcggctcaa ctgagtcgct gcgattggag ttcggggtaa actcagatag
1551 tacctacgat gctacagtcg atggtacaga ctggcccaga attcctccac
1601 caaggcaccc acctgaacct agagtttccg gcaattcaag aactgttact
1651 gacttttctc cggaaaccga cctattggag aattgggatg ccaaacactt
1701 cgaccctggt tattccaaag aagatgtcgc tgctgctact attatagcgc
1751 acggcagtat tcaagatggg cgaagtatgt tggagaagag agaggaaaat
1801 gtcaagaaca aaacctcctc ctggaagccc ccgttatcta aagcggtgag
1851 cccagccata gccaaattgc gctcgattcg caaatcccaa cctctcgagg
1901 gagggaccct taataaagac gccactgatg gtgtctcatc tattggcagt
1951 ggttctctaa caggtggcac gctcaagagg aaggtaacta ttgaagatcg
2001 tttactgcag accttaacaa ctgaacaaag gctgtggttc gagaatttga
2051 agaaaactaa ccctccagct gctacccaat ggctgtatga atatcagcca
2101 cctccccaag tagatagaaa catagctgaa aagccatttc aagggaggaa
2151 atga