Sequence of DPV Tomato leaf curl Bangalore virus
Tomato leaf curl Bangalore virus-[Ban5] DNA A, complete genome.
ACC No: AF295401
Dated: 2005-12-08 | Length: 2759 | CRC: 1336843074
ID AF295401 standard; circular genomic DNA; VRL; 2759 BP.
XX
AC AF295401;
XX
SV AF295401.1
XX
DT 19-MAR-2001 (Rel. 67, Created)
DT 08-DEC-2005 (Rel. 86, Last updated, Version 8)
XX
DE Tomato leaf curl Bangalore virus-[Ban5] DNA A, complete genome.
XX
KW .
XX
OS Tomato leaf curl Bangalore virus-[Ban5]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2759
RX PUBMED; 15669112.
RA Kirthi N., Priyadarshini C.G., Sharma P., Maiya S.P., Hemalatha V.,
RA Sivaraman P., Dhawan P., Rishi N., Savithri H.S.;
RT "Genetic variability of begomoviruses associated with cotton leaf curl
RT disease originating from India";
RL Arch. Virol. 149(10):2047-2057(2004).
XX
RN [2]
RP 1-2759
RA Kirthi N., Savithri H.S.;
RT "Nucleotide sequence of Tomato leaf curl virus Bangalore-5 isolate";
RL Unpublished.
XX
RN [3]
RP 1-2759
RA Kirthi N., Savithri H.S.;
RT ;
RL Submitted (14-AUG-2000) to the EMBL/GenBank/DDBJ databases.
RL Department of Biochemistry, Indian Institute of Science, Bangalore 560 012,
RL India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2759
FT /db_xref="taxon:220933"
FT /mol_type="genomic DNA"
FT /virion
FT /organism="Tomato leaf curl Bangalore virus-[Ban5]"
FT /isolate="Bangalore-5"
FT /segment="DNA A"
FT gene 141. .488
FT /gene="AV2"
FT CDS 141. .488
FT /codon_start=1
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q993Z2"
FT /gene="AV2"
FT /product="movement protein"
FT /protein_id="AAK19179.1"
FT /translation="MWDPLLNDFPETVHGFRCMLAIKYLQLVENTFSPDSLGYDLIRDL
FT ISVVRPKSYVQASGRYDHFRARLEVSPTSELNQPIQQACCCPHCPRHKGKGMGQQAHES
FT EAHVLQDVQRS"
FT gene 301. .1071
FT /gene="AV1"
FT CDS 301. .1071
FT /codon_start=1
FT /db_xref="GOA:Q993Z1"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q993Z1"
FT /gene="AV1"
FT /product="capsid protein"
FT /protein_id="AAK19178.1"
FT /translation="MSKRPADMIISGPVSKYRRLLSSISPYSKRAAVRIVRATKGKEWA
FT NRPMNRKPMFYRMYRGPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGDVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVKVNNYVVYNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1074. .1478)
FT /gene="AC3"
FT CDS complement(1074. .1478)
FT /codon_start=1
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q993Z0"
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="AAK19176.1"
FT /translation="MDSRTGEPITAAQTENGVFIWEIQNPLYFKITERHNRPFLSEKDI
FT ITVQIQFNHSLRKALGIHKCFLAYRIWTISQPLTGHFLRVFKTQVYKFLNNLGVISINN
FT VNRAVDHVLWNVLHHVIYVEQSYLIKFNIY"
FT gene complement(1219. .1623)
FT /gene="AC2"
FT CDS complement(1219. .1623)
FT /codon_start=1
FT /db_xref="GOA:Q993Y9"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:Q993Y9"
FT /gene="AC2"
FT /product="transcription enhancer protein"
FT /protein_id="AAK19175.1"
FT /translation="MRDSSPSKNHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALA
FT CNDHGFTHRGTHHCSSNREWRVYLGNSKSPLFQDNRATQPAIPVGERHHNRPDTIQSQL
FT EESVGDTQMLSGLPNLDDLTASDWSFLKGL"
FT gene complement(1526. .2611)
FT /gene="AC1"
FT CDS complement(1526. .2611)
FT /codon_start=1
FT /db_xref="GOA:Q993Y8"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q993Y8"
FT /gene="AC1"
FT /product="replication associated protein"
FT /protein_id="AAK19174.1"
FT /translation="MPQIKRFQIYAKNYFLTYPKCSISKEEALSQLQNLETPTNKLFIR
FT VSRELHDDGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKAYV
FT EKDGGFIDFGVFQIDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDFVLQFH
FT NLNANLDRIFTPPLEVYISPFSSSSFDTVPEELYQWAADNVVDAAARPIRPISIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQKDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNNALKQWALKNARFITLEEPL
FT YSGSNQSAAQVSQEGDQASTS"
FT gene complement(2161. .2454)
FT /gene="AC4"
FT CDS complement(2161. .2454)
FT /codon_start=1
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q993Y7"
FT /gene="AC4"
FT /product="C4 protein"
FT /protein_id="AAK19177.1"
FT /translation="MGNLISTCSSSSKENSNVKTTDSLTWFPQPDQHISIRTFRGLRAV
FT QMSRPMWKKTEDSLILEFSRSMADQLEEVSNLPTTHMPRQSIQGPKLRPSIF"
XX
SQ Sequence 2759 BP; 754 A; 555 C; 598 G; 852 T; 0 other;
af295401 Length: 2759 08-DEC-2005 Type: N Check: 7202 ..
1 accggatggc cgcgcctttc tgtcactgtc acggtcccca ccactaaatc
51 atgtctgcca atcatatgcc ttcctgaaag cttaattatt tatttttgtc
101 cttatataaa cttagtcacc aagttttacc attatttaaa atgtgggatc
151 cacttttaaa tgattttcct gaaaccgtac acggattcag gtgtatgctt
201 gctataaaat acctgcagtt ggtagaaaat acgttttccc ccgattcgtt
251 gggatacgac ctaatacgtg atttaatttc tgtcgtcagg cccaaaagct
301 atgtccaagc gtccggcaga tatgatcatt tccgggcccg tctcgaagta
351 tcgccgactt ctgagctcaa tcagcccata cagcaagcgt gctgctgtcc
401 gcattgtccg cgccacaaag ggaaaggaat gggccaacag gcccatgaat
451 cggaagccca tgttctacag gatgtacaga ggtcctgatg ttccaagagg
501 ctgtgagggt ccatgtaagg tccagtcctt tgagtcaaga cacgatgtag
551 ttcatatagg gaaggtcatg tgtattagtg atgtgactcg tggtacgggg
601 ttaacacata gagttggtaa gcgattttgt gttaagtcag tatacgtttt
651 gggtaagata tggatggatg agaacataaa gactaagaat catactaata
701 gtgttatgtt ttttcttgtt cgtgaccgtc gtcctgttga taagccccaa
751 gactttggag atgtgttcaa tatgtttgac aatgagccta gcactgcaac
801 tgtgaagaat atgcacagag atcgttatca ggtgttgagg aaatggcatg
851 caactgtcac tggtggtcaa tacgcttcaa aggaacaggc attagtgaag
901 aagtttgtta aggttaataa ttatgttgtt tataaccagc aagaggctgg
951 gaaatatgaa aatcattctg agaatgcgtt gatgttgtat atggcatgta
1001 ctcatgcctc taatcctgtg tatgctacgc ttaagattcg tatttacttc
1051 tacgattctg taaccaactg atattaataa atattaaatt ttattaaata
1101 tgattgttct acatatataa catgatgtaa tacattccat aatacatgat
1151 caactgctcg atttacattg ttaatactga taactcctaa attatttaaa
1201 aacttataca cttgggtttt aaagaccctt aagaaatgac cagtcagagg
1251 ctgtgagatc gtccagattc ggtaggccag aaagcatttg tgtatcccca
1301 acgctttcct caagctgtga ttgaattgta tctggacggt tatgatgtct
1351 ttctccgaca ggaatggccg gttgtgtcgc tctgttatct tgaaataaag
1401 gggattttga atttcccaga taaacacgcc attctctgtt tgagctgcag
1451 tgatgggttc ccctgtgcgt gaatccatgg tcgttgcagg ctaatgctat
1501 gaagtatgaa cacccgcacg gtagatcaac tcgtcgacgc ctggtcccct
1551 tcttggctaa cctgtgctgc actttgattg gaacctgagt agagtggttc
1601 ttcgagggtg atgaatctcg catttttaag agcccactgc tttagtgcgt
1651 tgttcttgtc ttcgtccaga aattctttat agctgctgtt aggccctgga
1701 ttgcagagga agatagtggg aatgcctcct ttaatttgaa ctggctttcc
1751 gtattttgtg ttggattgcc agtccttttg ggcccccatg aactctttaa
1801 agtgtttcag ataatgcgga tcgacgtcat caatgacgtt gtaccacgca
1851 tcattggaat acactcgtgg gcttaagtcc aaatgtccgc atagataatt
1901 atgcgggcct aaagacctag cccacatagt tttgcccgta cgactatcac
1951 cctcaataac aatacttatg ggcctaatag gccgcgcagc ggcatccaca
2001 acattatctg cagcccactg atatagttct tctggaactg tatcaaacga
2051 agaagaagaa aaaggagaaa tataaacctc caacggaggt gtaaaaatcc
2101 tatctaaatt agcatttaaa ttatgaaact gtaatacaaa atctttggga
2151 gctttctccc ttaaaatatt gagggccgca gctttggacc ctgaattgat
2201 tgcctcggca tatgcgtcgt tggcagattg ctgacctcct ctagctgatc
2251 tgccatcgat ctggaaaact ccaaaatcaa tgaatcctcc gtctttttcc
2301 acataggcct tgacatctga actgctctta gccccctgaa tgttcggatg
2351 gaaatgtgtt gatctggttg gggaaaccag gtcaaagaat ctgttgtttt
2401 gacatttgaa ttttccttcg aactggatga gcacgtggag atgaggttcc
2451 ccatcgtcgt gaagctctct tgaaactcta atgaataatt tattagttgg
2501 ggtttctagg ttttgtaatt gggaaagtgc ctcctcttta ctaatagaac
2551 atttagggta tgtaagaaaa taatttttag catatatttg aaaccgtttt
2601 atttgaggca tgttgacttg gtcaatcggt actcaacaaa cttgtctatg
2651 caatcggtga atggtactca atatatactt gagtaccaaa tggcataatt
2701 gtaatttcca agaaagttcc aatcaatatc ccggtaattg cggccatccg
2751 tctaatatt