Sequence of DPV Pepino mosaic virus
Pepino mosaic virus replicase gene, partial cds; and Orf2, Orf3, Orf4, and putative coat protein genes, complete cds.
ACC No: AF340024
Dated: 2002-06-18 | Length: 3599 | CRC: 1302385858
!!NA_SEQUENCE 1.0
ID AF340024 standard; RNA; VRL; 3599 BP.
XX
AC AF340024;
XX
SV AF340024.1
XX
DT 14-JUN-2001 (Rel. 68, Created)
DT 18-JUN-2002 (Rel. 72, Last updated, Version 2)
XX
DE Pepino mosaic virus replicase gene, partial cds; and Orf2, Orf3, Orf4, and
DE putative coat protein genes, complete cds.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potexvirus.
XX
RN [1]
RP 1-3599
RX MEDLINE; 21670015.
RX PUBMED; 11811692.
RA Mumford R.A., Metcalfe E.J.;
RT "The partial sequencing of the genomic RNA of a UK isolate of Pepino mosaic
RT virus and the comparison of the coat protein sequence with other isolates
RT from Europe and Peru";
RL Arch. Virol. 146(12):2455-2460(2001).
XX
RN [2]
RP 1-3599
RA Mumford R.A.;
RT ;
RL Submitted (24-JAN-2001) to the EMBL/GenBank/DDBJ databases.
RL Virology, Central Science Laboratory, Sand Hutton, York, North Yorkshire
RL YO41 1LZ, UK
XX
FH Key Location/Qualifiers
FH
FT source 1. .3599
FT /db_xref="taxon:112229"
FT /virion
FT /organism="Pepino mosaic virus"
FT /isolate="UK2"
FT CDS <1. .1599
FT /codon_start=1
FT /product="replicase"
FT /protein_id="AAK61863.1"
FT /translation="APRVQILLDNHTQHCSDRVLYTCLSRAVDSIHFINTGPNNSEFWD
FT KLESTPYLKAFIDTYRDEKTEMLNSKPADDSPAEPEAPLTHFPVSNGNNLEKLASALPE
FT KFARELYDKHHGYSNTIQTENPVVQLFQHQQAKDETLFWATIEARLSITTPEANLREFV
FT LKKDVGDILFFNYHNVMCLPADPVDFEPRTWEICAAEVKNTYLAKPMANLINAASRQSP
FT DFDANKISLFLKSQWVKKVEKLGAVKSKPGQTIAAFMQQTVMLYGTMARYLRKMRQRFQ
FT PKHIFINCETTTDNLNQFVKQGWNFNRTAQTNDFTAFDQSQDGAMLQFEVMKAKFFNIP
FT ADIIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANTECSIAYTATRYHLDSTVKQVYA
FT GDDMALDGVVQEKPSFKKLQNQLKLTSKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKM
FT HASIMLQEAIGNLHTAARSYAIDMKHSYQVGDELHNYLTPDEAEQHFLAVRKLHKLHQG
FT EAMRLGEKSPPKATH"
FT CDS 1625. .2329
FT /codon_start=1
FT /product="Orf2"
FT /protein_id="AAK61864.1"
FT /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIIEFFNPFEVDPTEHI
FT SASEEEVLDFVPDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHIHK
FT LTIGELNARSNS"
FT CDS 2310. .2681
FT /codon_start=1
FT /product="Orf3"
FT /protein_id="AAK61865.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH
FT SCYNTHSATNNTQPLSGHH"
FT CDS 2533. .2787
FT /codon_start=1
FT /product="Orf4"
FT /protein_id="AAK61866.1"
FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT QVTIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT CDS 2826. .3539
FT /codon_start=1
FT /product="putative coat protein"
FT /protein_id="AAK61867.1"
FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
FT 3'UTR 3560. .3599
XX
SQ Sequence 3599 BP; 1122 A; 846 C; 656 G; 975 T; 0 other;
AF340024 Length: 3599 June 25, 2002 09:06 Type: N Check: 2138 ..
1 gcaccgagag tccaaatttt gcttgacaac cacacacaac actgctcaga
51 cagggtgctg tacacttgtc tctccagagc tgtggattcc atccacttta
101 tcaatacagg cccaaacaat tctgaatttt gggacaagct tgagtcaaca
151 ccatacctca aagcatttat tgatacttac agagatgaga aaacagaaat
201 gctcaattct aagcctgctg atgacagtcc cgctgagcct gaagctccat
251 tgactcactt tccagtgtca aacggcaata acttggaaaa gttagcttca
301 gcgcttcctg aaaaatttgc aagagagtta tatgataaac accatggata
351 ttctaataca atccaaactg aaaatccagt ggtgcaactt ttccagcatc
401 aacaagccaa agatgaaaca cttttctggg caacaataga agctagactt
451 tctattacaa ctccggaagc caacttacga gaatttgtgc taaagaaaga
501 tgttggagat atcttgtttt tcaattacca caatgtcatg tgcttacctg
551 ccgacccagt ggatttcgag ccaagaacat gggaaatatg tgctgctgaa
601 gttaaaaata catacttagc caaaccaatg gctaacttga tcaatgctgc
651 tagcagacaa tctcctgatt tcgacgctaa caaaatttcc ctgttcctaa
701 aatctcaatg ggtcaagaaa gtggaaaaat taggtgctgt caagtcaaag
751 cctggccaga ccattgcagc tttcatgcaa caaacagtga tgttgtatgg
801 gaccatggcc agatacctca gaaagatgag acaaagattt caaccaaaac
851 atattttcat caattgtgaa acaacaactg ataatctgaa ccaatttgtt
901 aaacaaggtt ggaactttaa cagaacagct cagacaaatg atttcacagc
951 ttttgaccaa tcacaagatg gtgcaatgct tcaatttgaa gtcatgaagg
1001 caaaattctt caatatccct gccgacatca ttgaaggata catcaacatc
1051 aaattgaacg ccaaaatttt ccttggcacc ttgtccatca tgaggttgtc
1101 tggtgaaggt ccaacttttg atgccaacac agaatgttcg atagcatata
1151 ctgctacaag ataccatctt gattcaacag tcaagcaggt ttatgctgga
1201 gatgatatgg cattagatgg agttgttcaa gaaaaaccct cttttaaaaa
1251 actacagaac cagcttaaac tcacctcaaa gacactattt ccaaaacagg
1301 ttaaaggtga ttatgctgaa ttctgtggtt ggactttcac tcctggtggt
1351 atcattaaaa accctttgaa aatgcatgct tccattatgt tgcaagaggc
1401 aatcggcaat ttacacactg ctgccagatc atatgccatt gacatgaagc
1451 attcatacca agtgggtgat gagctgcaca attacttaac accagatgaa
1501 gctgaacaac acttccttgc tgttcggaag ttgcacaagt tacaccaagg
1551 agaagcaatg agacttggtg aaaagagccc tccaaaagca acacattgag
1601 gggttaagtt ttccccagtt cgaaatggaa agatcaactc tgattaattt
1651 acttcaattg caccacttcg agccaaaact cagtgttgaa ggaatcatag
1701 ttgtgcacgg aattgcaggc actgggaaaa ccactttact taggacttta
1751 ttttctgctt accctagctt agttataggt tcacctaggc cttgctattt
1801 agataaacaa aataaaattt cacaagtttg cttatcttgc tttcccaata
1851 cccattgtga tattgtcgat gagtatcatt tgctagaaag ttttccagaa
1901 ccaaaattgg ctatctttgg tgacccctgt caatgcacat acattgagag
1951 acttagagtc ccacattaca cttccttcag aactcataga tttggaaagt
2001 caactgctga gattttgaac aaactgttcg accttaatat agtctcagtt
2051 aagaaagaag acgacatcat tgaattcttt aacccttttg aagttgaccc
2101 cactgagcat atctcagcct ctgaagaaga agtcttggac tttgtccctg
2151 accaagtggt gaccactagc tcagaggaac tagcaggact tgagtttgca
2201 gaaacaactt tctactgcac aacattggcc gcagctgttg ctgaaaatcc
2251 tgctaagact ttcatctctc tgactagaca catccacaaa ctcaccattg
2301 gggaactaaa tgccaggtct aactcctaga gctgacctca ctgacacata
2351 caaaatcatt gccattgctt tcttgttgtc agcttgcatt tacttccaaa
2401 atagccacta ccaacctgtt gctggagaca acttgcaccg tttgcctttt
2451 ggtggccaat atcaagacgg caccaaaaag atatcttatt ttccacaaca
2501 gcagtcatac tttcattctg gaaacaaatt aaatgtcctc atacttatct
2551 tcattctcac attgggtatt gtcctcacca ataaatttag ttttagcttt
2601 agtcgtacta ctcaccagca ttcttgctat aacacacatt cagcaaccaa
2651 caatacacaa ccattgtcag gtcaccattg acggtgctgc aatagtcata
2701 acaaattgtg agaacacacc agaagtgctt aaagcaatca acttctcccc
2751 ttggaacggg ttaagttttc ctaaatttga aaattaatat tgagtgttca
2801 caaaaatcaa cttcaataaa caatcatgcc tgacacaaca cctgttgctg
2851 ccacttcaag tgcaccaccc acagccaaag atgctggtgc caaagctcct
2901 tctgacttct caaatcccaa tacagctcct agtctcagtg atttgaagaa
2951 agtcaagtat gtctccaccg tgacctccgt ggccacacca gctgaaattg
3001 aagccctagg caaaatcttc accgctatgg gccttgccgc caatgagact
3051 ggtccggcca tgtgggatct agctcgtgca tatgctgatg tgcagagttc
3101 taaatcggca cagctgattg gagctacccc ttccaaccct gcactatcac
3151 gccgagccct tgctgctcag tttgatcgaa tcaatataac tcccaggcaa
3201 ttttgcatgt actttgccaa agttgtttgg aacatacttc tcgacagcaa
3251 cattccacca gcaaattggg ccaaacttgg ttaccaagaa gatacaaaat
3301 ttgctgcatt tgacttcttc gatggagtca ccaaccctgc cagcctgcag
3351 cctgctgatg gtcttatcag gcagccaaat gaaaaagaac tagctgctca
3401 ctccgtagct aagtacggcg ccttggctag gcaaaagatc tccacaggta
3451 attatattac cacacttgga gaagtcacac gtggacacat gggaggagct
3501 aacaccatgt acgcgataga cgcaccccct gaactttaaa cactcgaaac
3551 ttaatcagag tggggttttc tacagtttat tttcctaatt atttctttg