Sequence of DPV Citrus tristeza virus

Citrus tristeza virus isolate BC15-1 coat protein gene, complete cds.

ACC No: AF342894

Dated: 2009-09-05 | Length: 669 | CRC: -517474362

                
ID   AF342894; SV 1; linear; genomic RNA; STD; VRL; 669 BP.
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AC   AF342894;
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DT   30-MAR-2001 (Rel. 67, Created)
DT   05-SEP-2009 (Rel. 102, Last updated, Version 2)
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DE   Citrus tristeza virus isolate BC15-1 coat protein gene, complete cds.
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KW   .
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OS   Citrus tristeza virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Closterovirus.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-669
RX   PUBMED; 19642988.
RA   Herrera-Isidron L., Ochoa-Sanchez J.C., Rivera-Bustamante R.,
RA   Martinez-Soriano J.P.;
RT   "Sequence diversity on four ORFs of citrus tristeza virus correlates with
RT   pathogenicity";
RL   Virol. J. 6:116-116(2009).
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RN   [2]
RA   Herrera-Isidron L., Villarreal-Garcia L.A., Rivera-Bustamante R.,
RA   Martinez-Soriano J.P.;
RT   "Molecular Analysis of Citrus tristeza virus from Mexico";
RL   Unpublished.
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RN   [3]
RP   1-669
RA   Herrera-Isidron L., Villarreal-Garcia L.A., Rivera-Bustamante R.,
RA   Martinez-Soriano J.P.;
RT   ;
RL   Submitted (26-JAN-2001) to the EMBL/GenBank/DDBJ databases.
RL   Departamento de Biotecnologia y Bioquimica, CINVESTAV Irapuato, km 9.6 lib.
RL   norte Carr. Irapuato-Leon, Irapuato, Guanajuato 36500, Mexico
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FH   Key             Location/Qualifiers
FH
FT   source          1. .669
FT                   /organism="Citrus tristeza virus"
FT                   /isolate="BC15-1"
FT                   /mol_type="genomic RNA"
FT                   /country="Mexico:State of Baja California"
FT                   /db_xref="taxon:12162"
FT   CDS             1. .669
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q990P0"
FT                   /db_xref="InterPro:IPR002679"
FT                   /db_xref="UniProtKB/TrEMBL:Q990P0"
FT                   /protein_id="AAK27480.1"
FT                   /translation="MDETKKLKNKNKETKEGDDVVAAESSFGSVNLHIDPTLIAMNDVR
FT                   QLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHLAMMLYRLAVKSSSLQSDDDTTGVTY
FT                   TRDGVEVELSDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRPL
FT                   DAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNTR
FT                   "
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SQ   Sequence 669 BP; 196 A; 120 C; 168 G; 185 T; 0 other;

af342894 Length: 669  05-SEP-2009  Type: N  Check: 3282  ..

       1  atggacgaaa caaagaaatt gaagaacaaa aacaaggaaa cgaaagaagg
      51  cgacgatgtt gttgctgctg agtcttcttt cggttccgta aacttacaca
     101  tcgatccgac tctgatagcg atgaacgatg tgcgtcagtt gggtacccaa
     151  cagaatgctg ctttgaatag agatttgttt cttaccttga aagggaagta
     201  tcctaactta cctgacaaag ataaagactt tcacttagct atgatgttat
     251  atcgtttagc agttaagagt tcatcattac aaagcgacga tgataccacg
     301  ggtgtgacgt acactcggga tggtgttgaa gtggaattgt ctgacaaact
     351  ttggacagac gtcgtgttta actctaaggg tattggtaac cgtactaacg
     401  cccttcgagt ctggggtaga actaacgatg ccctttattt ggctttttgt
     451  agacagaacc gcaacttgag ttatggtgga cgtccgttag atgcaggaat
     501  tccagccggg tatcactacc tgtgtgctga tttcttgacc ggagctggat
     551  tgactgattt agaatgtgca gtgtacatac aagctaaaga gcaattatta
     601  aagaagcgag gggctgatga ggtcgtagtt actaatgtca ggcagcttgg
     651  gaaatttaac acacgttga