Sequence of DPV Citrus yellow mosaic virus
Citrus yellow mosaic virus, complete genome.
ACC No: AF347695
Dated: 2001-10-27 | Length: 7559 | CRC: -1788849345
!!NA_SEQUENCE 1.0
ID AF347695 standard; circular DNA; VRL; 7559 BP.
XX
AC AF347695;
XX
SV AF347695.1
XX
DT 27-OCT-2001 (Rel. 69, Created)
DT 27-OCT-2001 (Rel. 69, Last updated, Version 1)
XX
DE Citrus yellow mosaic virus, complete genome.
XX
KW .
XX
OS citrus yellow mosaic virus
OC Viruses; Retroid viruses; Badnavirus.
XX
RN [1]
RP 1-7559
RX MEDLINE; 21446687.
RX PUBMED; 11562547.
RA Huang Q., Hartung J.S.;
RT "Cloning and sequence analysis of an infectious clone of Citrus yellow
RT mosaic virus that can infect sweet orange via Agrobacterium-mediated
RT inoculation";
RL J. Gen. Virol. 82(Pt 10):2549-2558(2001).
XX
RN [2]
RP 1-7559
RA Huang Q., Hartung J.S.;
RT ;
RL Submitted (08-FEB-2001) to the EMBL/GenBank/DDBJ databases.
RL Fruit Lab, USDA/ARS, 10300 Baltimore Ave., Beltsville, MD 20705, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7559
FT /db_xref="taxon:174178"
FT /virion
FT /organism="citrus yellow mosaic virus"
FT CDS 231. .662
FT /codon_start=1
FT /note="ORF 1"
FT /product="unknown"
FT /protein_id="AAL18493.1"
FT /translation="MSRIWEEAIQKWYETSHTANLEYLDLASKPKVSNSEISHNLAVVY
FT DRLNLFSRVSIKNFKSIQETLEKQDLRIRKLESSLKTLTSEFIAHKPLSKSEVKALVTE
FT IAKQPKLVEAQALQLTESLNQKLDRVETLIAKVERWVHS"
FT CDS 659. .1072
FT /codon_start=1
FT /note="ORF 2"
FT /product="unknown"
FT /protein_id="AAL18494.1"
FT /translation="MTYQNTEKTPTYKRALEATEPINSPALGFINPEDYSGGITGTKAL
FT IKQNNLLIQLVVELSVNVNSLSEQVAQLTRQLGKQPQQGSSTATLPDDLVDKLKNLSLG
FT TEKKKEKRGTFYAYKDPYLIYKEEVEKLKKQQQ"
FT CDS 1069. .7020
FT /codon_start=1
FT /note="ORF 3"
FT /product="unknown"
FT /protein_id="AAL18495.1"
FT /translation="MSTSRARTVIEQLPPATTARVEERDNTPLYDDQIRDYRQWQRRRH
FT NMGRRWNQLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRTDDRHHQVYIH
FT KSEEAILCVDGDQVDRLLIQPESAEQLSRSGMSFIHMGIVQVRIQILHRQHEGTTALVV
FT FRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNG
FT EANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSTADIQGQQWFLR
FT PSNIPAVPMAPTNVDTRNMIDGSISLRFNSYQPAPDPTPVAYNQHDEEVPPDEDEEQIR
FT NHTIALWREDDEVWDTLGEPSGKFDFYVRYTRPAHALQDPAHIVATGWDDLDNDPSTSS
FT PSNNILTYLTPSSSSDEDDDMSYLQYLAQQSPVPSPTQDFTNPFSEGGGESTYPYPSFQ
FT PPFDLQSDDSYGTLATWSEYDAMSQSNSPSSHSDAIQHLSFQHPSADTVLDFDRYSFTT
FT SEDDVVQSAWISENLFRENTGNGEVHNLVPPRPDTPRGDEVKGTQESMAHTVAVTTEES
FT KHEAEFDYPAFARLQAHEESGRPKPKTEKVLSSAISSYTPPTDTAMTPVAYPPAQNIAS
FT PSYNPSPQMPMFEGYYPKRPNFKRDNHAFISLPSAQQNTGALFIMPQQIGLFHEVFTSW
FT EAITKAYVAQQGITDPRDKAEFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGT
FT QNILSQMRRVFSLEDPTTGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRM
FT FIGPELSEKLWLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRR
FT SLKNLSFCSSIPIPGYYGGKSGEKRYGVRRTTTYKGKPHSTHARIEKTKHLRNKKCKCY
FT LCGEEGHFARECPNDRRNVKRVAMFEGLDLPDDCEIVSIDEGDPDSDAIFSISEGEEAG
FT TLEEQCFVFQEECNGTYWLGKRGGYQDLVQISKEIYYCQHEWEENQPINDPAHVRCYPC
FT KRETTQRARLHCKLCHITSCLMCGPTYFNKKITVQPMPQAPFNQKGLLQQQQEYIAWCN
FT NEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGVDSRRRKDKGIVIDEGSCYFNPEE
FT TTRIIAHGDTQVTKTRPVKNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPK
FT DALEENSFVVNFSGINSKQQVKQKLKTGKMFINEHYFRIPYCYSFEMQIGDGIQLILGC
FT NFIRSMYGGVRLEGNTITFYKQITSINTRLAAPLLKQEEEEKEEELNLEEHRLIQEMVA
FT YSTERPFVQFQQKFAGLIQDLKAQGYIGEEPMKYWAKNQVVCHLDIKNPDMVIEDRPLK
FT HVTPQMEESFRKHVEALLKIGAIRPSKSRHRTTAIIVNSGTSIDPITGKEVKGKERMVF
FT NYKRLNDLTNKDQYSLPGIQTILQRLKGSTIFSKFDLKSGFHQVAMHPDSIEWTAFWVP
FT SGLYEWLVMPFGLKNAPAIFQRKMDHCFKGTEAFIAVYIDDILVFSKTEQDHEKHLQIM
FT LAICQKNGLILSPTKMKIAQAEIEFLGAIIHKGLIKLQPHIVQKLLTFTNKQLEEVKGL
FT RSWLGLLNYARSYIPHMGRLLSPLYAKVSPTGERRMNRQDWALIDKIRAQVQNLPALEL
FT PPADCFIIIETDGCMDGWGGVCKWKVAQYDPRSSERVCAYASGKFNPPKSTIDAEIHAV
FT MNSLNNFKIYYLDKSSLCLRTDCQAIISFFNKSNVNKPSRVRWIAFTDFLTGLGIPVNI
FT EHIDGKNNHLADALSRLVTGFVFAEPQCQDKFQDDLGKLEAALQEKKEAPQAMHVEYVS
FT LLIRSADRITRSLCFMRDSSHSRIYSCRPGKEPMKALICEQKSCQSKGDLGNTRTVHSK
FT SAFNQQDNWWPSTSTNSLTSEAKLQGTTHMPIGYPHAIGTTSNCVKWSSY"
FT CDS 1973. .2512
FT /codon_start=1
FT /note="ORF 4"
FT /product="unknown"
FT /protein_id="AAL18496.1"
FT /translation="MDLFLLDSTVTNQLQIQPLLLIISMMRKYPLMKMKSRSVIIPSLY
FT GGKMTRYGIHLVNLRANLIFMSVILDLHMLYKILLILLLLDGMTLTMIHPPQVLLIISL
FT LTSPLLPLLMRMMTCPISNTLLNNHLFLLLHRISPILFRKVVGNLPTLTPHFNHHSTFN
FT QTTHMVLWQLGVNMML"
FT CDS 3977. .4264
FT /codon_start=1
FT /note="ORF 5"
FT /product="unknown"
FT /protein_id="AAL18497.1"
FT /translation="MKVIQIVMQSSVFPKEKKLELLKNNVLCSRKNAMEHIGLVKEVDT
FT RISCKSLRRSTIASMNGRRINPLMIQHMFGVTLVKGKPLRELAYIASYAT"
FT CDS 6594. .7058
FT /codon_start=1
FT /note="ORF 6"
FT /product="unknown"
FT /protein_id="AAL18498.1"
FT /translation="MSRQVPGRFREIGSSSSGEERGSASNARRICLPVDQISGPHYPLA
FT LLYEGLVSQQNLLMQARQRTNEGLNLRTEVMPIQRRLREYEDCALQECIQSARQLVALH
FT QHKLAYIRSKATRDNAYADRLPTCNRDHEQLCEVVELLEGISERISDTAV"
XX
SQ Sequence 7559 BP; 2337 A; 1631 C; 1666 G; 1925 T; 0 other;
AF347695 Length: 7559 December 21, 2001 15:32 Type: N Check: 5591 ..
1 tggtatcaga gcttggttat gttcttacaa cgatgggagc ttaagttctt
51 ccattaggtc tgaggaaaga gttggttgta tggtgtgttt agttcctatc
101 tgtattgtta ttcctgtgtt catgatatag aaaacgatca tcgcgaaaag
151 ggtgaaggca ctatatctgg cagcgagagg agagtaagtc cagtgaaacc
201 cttcgcatga cgctaaaggt gatctaatct atgtctagaa tttgggaaga
251 agcaatacag aaatggtatg agacatccca tacagctaat ctcgagtact
301 tagatctagc ttcaaaacca aaagtttcca attcagaaat ttcacacaac
351 cttgctgtag tttatgatcg tttgaatctg tttagccgtg tctctattaa
401 aaatttcaaa agtatccaag aaaccttaga aaaacaagac cttagaattc
451 gaaagcttga gtctagtttg aaaaccttaa ccagtgagtt tatagcccat
501 aaacctttgt ccaaaagtga ggtaaaagcc ttagtcacag aaattgccaa
551 acagccaaag cttgttgaag cacaggccct tcagttgacc gagtctctta
601 accaaaagct tgatagggtt gaaaccctaa tagctaaggt tgaacggtgg
651 gttcattcat gacctaccag aatactgaaa agactcctac atacaaaaga
701 gctttagaag caaccgagcc tatcaacagt cccgccctag gttttataaa
751 tccagaagat tattcaggag gcattactgg tacgaaggct ttgattaagc
801 aaaacaacct gctcattcaa cttgtggtgg aactttctgt caacgtcaac
851 agcttatctg aacaggttgc tcaacttaca aggcaacttg gaaagcaacc
901 ccagcaaggc tcatcaacag caaccttacc tgacgatttg gttgacaaac
951 tcaagaacct ttccttaggt actgagaaaa agaaggagaa gcgtggtacc
1001 ttctacgctt acaaagaccc atacctgatc tacaaggaag aggtagaaaa
1051 gttaaagaag caacaacaat gagtaccagt cgtgctcgta cagttataga
1101 gcaactccct ccggctacaa cagctcgggt ggaagaaagg gataatactc
1151 ccctctatga tgaccaaatc agagattata ggcagtggca gcggcggcgg
1201 cacaacatgg ggcggagatg gaatcagttg ataggacgac cctacaatca
1251 gaccttggaa caggttgtgg accctgaagt agctttacag ctatcaatgc
1301 aggagcgtgc cagactagta ccagcagagg tactttacag atcaagaact
1351 gatgatcggc accatcaagt ctacattcac aagtcagagg aggctatcct
1401 ttgtgtagat ggtgatcaag ttgaccggtt actaattcaa ccggaaagtg
1451 ctgaacagtt aagcaggagc ggtatgtcct tcattcatat gggcatagtt
1501 caggttcgga tccagatctt acacagacag catgagggaa caacagccct
1551 tgtggtgttt agagacaatc ggtggcaagg agaccagtca atatttgcca
1601 ccatggagct ggatttaact aaaggtatgc agatggtgta cataatcccg
1651 gacaccatga tgacagtcag agacttctgc cggaatgttc aaatttccat
1701 attaacaaaa ggatatggga attggcagaa tggcgaggca aatctgcttg
1751 ttacaagggg aattgttgga cggttatcaa atacccctaa tgtggccttt
1801 gcctatcaga tccaaaatgt taccgactac ttggtcagtc atggaattca
1851 ggccctgcca ggacggcgat attctactgc agatatacag ggccaacaat
1901 ggttcctaag accatccaat atcccagcag tcccaatggc ccccaccaac
1951 gtggatacaa gaaacatgat tgatggatct atttctctta gattcaacag
2001 ttaccaacca gctccagatc caacccctgt tgcttataat cagcatgatg
2051 aggaagtacc ccctgatgaa gatgaagagc agatccgtaa tcataccatc
2101 gctttatggc gggaagatga cgaggtatgg gatacacttg gtgaaccttc
2151 gggcaaattt gatttttatg tccgttatac tcgacctgca catgctctac
2201 aagatcctgc tcatattgtt gctactggat gggatgacct tgacaatgat
2251 ccatccacct caagtccttc taataatatc cttacttacc tcaccccttc
2301 ttcctcttct gatgaggatg atgacatgtc ctatctccaa taccttgctc
2351 aacaatcacc tgttccttct cctacacagg atttcaccaa tcctttttcg
2401 gaaggtggtg gggaatctac ctacccttac ccctcatttc aaccaccatt
2451 cgaccttcaa tcagacgact catatggtac tttggcaact tggagtgaat
2501 atgatgctat gagtcaatca aacagtcctt catcacactc agatgctatt
2551 caacatctta gtttccagca cccaagtgca gatactgtcc ttgattttga
2601 cagatattct tttacaacaa gtgaggatga cgtggttcaa tcagcctgga
2651 tatctgaaaa tctatttcgt gaaaacaccg gaaacggtga agttcacaat
2701 cttgttccac ctagaccgga cacccctcgg ggtgatgagg tcaaaggaac
2751 tcaggaatcc atggcccata ctgttgcagt aaccacagag gaatcaaaac
2801 atgaggctga atttgactat ccggcttttg ccagattaca agcccatgaa
2851 gagtcagggc ggcccaaacc caaaactgag aaagtcttat cctcagcaat
2901 ttcttcatat accccaccaa cggatactgc aatgacacct gttgcgtacc
2951 ccccagccca aaatatagcc agcccaagtt acaatccaag cccacaaatg
3001 cccatgttcg aagggtatta tcccaaaagg ccaaatttta agagggataa
3051 tcatgccttt atcagtcttc cctcggccca acaaaatact ggggctttat
3101 tcattatgcc tcaacaaatt ggcctgtttc atgaggtttt tacttcatgg
3151 gaagctataa caaaggccta tgttgctcaa cagggtatca cagacccaag
3201 ggataaagcc gagttcattg aaaacatgtt gggtccaaca gaaaagataa
3251 tttggactca atggcgtatg ggctacgccg atgaatatga gaaccttgtt
3301 acaactgctg atggtcgtga gggtactcaa aatatactct ctcagatgcg
3351 aagggtcttt tccttagaag atccaaccac aggttcaact gcagtccaag
3401 atgaagccta cagagacttg gagaggctta cttgtgattc tgtcaagcat
3451 atagtccaat acttaaatga ctttatgcgg attgcagcaa agactgggcg
3501 catgttcata ggcccagaat tgagtgaaaa gttatggctt aaaatgccag
3551 gtgacctagg ccaaagaatg aagaaggcct atgaagaaaa acatccaggg
3601 aacattgttg gtgtttgccc tcggattctg tttgcttata agtaccttga
3651 aggcgaatgc aaagatgcag cgttcagacg ctccctgaaa aatctatcct
3701 tttgcagctc aatccctatc ccaggctatt acggtggtaa aagtggagag
3751 aaacgttatg gtgtaaggcg cacaaccact tataagggaa agcctcatag
3801 cacccatgca aggattgaaa agacaaaaca tttgcgcaat aaaaagtgca
3851 agtgttatct gtgtggggaa gaaggtcact tcgcccggga atgtccaaat
3901 gaccggcgaa atgtgaaacg agttgcaatg ttcgaaggtt tagacctccc
3951 agatgactgt gagatagtct ccatcgatga aggtgatcca gatagtgatg
4001 caatcttcag tatttccgaa ggagaagaag ctggaactct tgaagaacaa
4051 tgttttgtgt tccaggaaga atgcaatgga acatattggc ttggtaaaag
4101 aggtggatac caggatctcg tgcaaatctc taaggagatc tactattgcc
4151 agcatgaatg ggaggagaat caacccatta atgatccagc acatgttcgg
4201 tgttaccctt gtaaaaggga aaccactcag agagctcgct tacattgcaa
4251 gctatgccac ataacatctt gccttatgtg tggccccacc tatttcaaca
4301 aaaagattac tgtccagcca atgcctcaag cacccttcaa ccaaaaggga
4351 ttgttacagc aacagcagga gtacatcgcc tggtgcaata atgaaattgc
4401 caggttaaag gaagaagttg ctttttacaa gcagctcgcc caggagagag
4451 aattgcagtt gcaacttgag caatcaagga aggagctagc aggagtagac
4501 tctcgcaggc gaaaagacaa aggaatagta atcgatgaag ggtcatgcta
4551 cttcaatcct gaagaaacaa ccaggataat tgctcacggt gacacacaag
4601 ttaccaaaac tcgaccagtt aagaatatgc tctacaacat ggatgtgcga
4651 atggaaattc caggcatccc agcttttaca gtaaaggcga ttcttgacac
4701 aggagcaaca acctgctgta ttgacagcag aagtgtacca aaagatgccc
4751 ttgaagagaa ttcatttgtg gtaaatttct caggcatcaa ttccaagcaa
4801 caagtcaagc agaagcttaa aactggaaaa atgttcatca atgagcatta
4851 cttccggatc ccatattgtt acagctttga gatgcaaatt ggtgatggca
4901 tccaacttat ccttgggtgc aactttatac gaagtatgta tggtggtgta
4951 cgattagaag gtaatactat aaccttctac aagcagataa caagtatcaa
5001 caccaggctt gctgcacctc tccttaagca agaagaagag gagaaagaag
5051 aagaactcaa cctggaagag cacaggttga ttcaagaaat ggttgcatac
5101 tccactgagc ggccatttgt tcaattccaa caaaagtttg cagggcttat
5151 tcaagactta aaagcccagg gatacattgg ggaagagcct atgaagtatt
5201 gggccaaaaa ccaagttgtt tgccatctgg acattaaaaa cccagatatg
5251 gtaattgaag atcgcccact gaagcatgtg acaccccaga tggaagaaag
5301 ctttcgcaag catgtggaag ccctgttaaa aataggagca atccggccca
5351 gtaaaagtcg gcacagaacc acagctataa tagtcaactc tggaaccagc
5401 atagacccta ttacagggaa ggaggttaag ggaaaggagc gaatggtctt
5451 taactataaa aggttaaatg acctaactaa taaagatcag tacagccttc
5501 ctggaatcca gacgatcctg cagagattaa aggggagcac aatattttcc
5551 aaattcgacc taaaaagtgg ctttcatcag gtagcaatgc atccagattc
5601 aatagaatgg acagcttttt gggtgcccag cggtctttat gaatggttag
5651 ttatgccatt cggattaaag aatgctccag caatttttca aaggaaaatg
5701 gatcactgtt tcaaaggcac ggaggccttt attgccgtct acatcgacga
5751 catcctagta ttctcaaaga ctgaacagga tcatgagaag catttacaga
5801 ttatgctcgc tatctgtcaa aagaatgggc ttatcctaag cccaacaaag
5851 atgaaaattg cccaagctga aattgaattc cttggggcaa tcattcacaa
5901 agggcttatc aagttgcagc cccacattgt tcaaaagttg ctcactttta
5951 ccaataagca acttgaggag gttaaagggc ttagatcatg gctaggcctg
6001 ctaaactatg caaggagcta tattccccat atgggccgtc tacttagccc
6051 attatatgcc aaagtcagcc caactggtga gcggagaatg aacagacaag
6101 attgggccct gattgacaaa ataagagccc aagtccaaaa tctaccagcc
6151 ctggaattac cacctgcaga ctgtttcatc atcatcgaaa cggatggatg
6201 catggatggt tggggaggtg tctgcaaatg gaaagtagcg caatacgacc
6251 ctcgaagttc agaaagggtt tgtgcttatg caagtgggaa gttcaaccca
6301 ccaaagtcaa caattgatgc ggagatacat gcagtgatga acagcctcaa
6351 caacttcaaa atctattacc tagacaagtc cagtttatgt ttgaggactg
6401 actgtcaagc tattattagc ttctttaata agtccaatgt taacaaaccg
6451 tctagggtta gatggattgc tttcacagat ttccttactg gtctaggaat
6501 ccctgtaaat atagagcaca tagatggaaa aaataaccat ctggctgatg
6551 ctctgtccag attagtaact ggttttgttt ttgcagaacc acaatgtcaa
6601 gacaagttcc aggacgattt agggaaattg gaagcagctc ttcaggagaa
6651 gaaagaggct ccgcaagcaa tgcacgtaga atatgtctcc ctgttgatca
6701 gatcagcgga ccgcattacc cgctcgctct gctttatgag ggactcgtct
6751 cacagcagaa tttactcatg caggccaggc aaagaaccaa tgaaggcctt
6801 aatctgcgaa cagaagtcat gccaatccaa aggcgactta gggaatacga
6851 ggactgtgca ctccaagagt gcattcaatc agcaagacaa ctggtggccc
6901 tccaccagca caaactcgct tacatcagaa gcaaagctac aagggacaac
6951 gcatatgccg ataggctacc cacatgcaat cgggaccacg agcaactgtg
7001 tgaagtggtc gagctattag aaggaatctc ggaaagaatc agcgatacag
7051 ctgtctagga cagctggctt caattatgga gcgtgatgga cccccccgca
7101 ataatccaaa gtttggtgtg cttttagtag tgcgtcttta tggaccacta
7151 ctttattgta ataatcgatg ctttttgtag tgcgctcttc gtgcgctcta
7201 ctttatgctt ttgcttttgt aagtgcgctg taagtgcgcc tgtctttctt
7251 cagatgctta tcctttaagc atcttttgct ttttgcgtgg catcctttag
7301 ttcacaattt aaagaatgac gatggggccc aagatgtgca cccggttctc
7351 taaattgcct atataaggat atgccatagc cttgtttttg caagtcagga
7401 atacctgagc ataacttggc taagcaaaag tttgtaagtg ttctaagctt
7451 tcatttgtaa actttctgtt tggttttaat aaaatctctc gtcaatcgtt
7501 gtgaacatat attgtttgtt tgtattgttg tatcttattt gttgtggtga
7551 taatggtaa