Sequence of DPV Tobacco leaf curl Zimbabwe virus
Tobacco leaf curl Zimbabwe virus, complete genome.
ACC No: AF350330
Dated: 2005-04-15 | Length: 2767 | CRC: 982391235
!!NA_SEQUENCE 1.0
ID AF350330 standard; circular genomic DNA; VRL; 2767 BP.
XX
AC AF350330;
XX
SV AF350330.1
XX
DT 02-JUL-2001 (Rel. 68, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 4)
XX
DE Tobacco leaf curl Zimbabwe virus, complete genome.
XX
KW .
XX
OS Tobacco leaf curl Zimbabwe virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2767
RX MEDLINE; 21571657.
RX PUBMED; 11714987.
RA Paximadis M., Rey M.E.;
RT "Genome organization of Tobacco leaf curl Zimbabwe virus, a new, distinct
RT monopartite begomovirus associated with subgenomic defective DNA
RT molecules";
RL J. Gen. Virol. 82(Pt 12):3091-3097(2001).
XX
RN [2]
RP 1-2767
RA Paximadis M., Rey C.;
RT ;
RL Submitted (18-FEB-2001) to the EMBL/GenBank/DDBJ databases.
RL Molecular and Cell Biology, University of the Witwatersrand, 1 Jan Smuts
RL Avenue, Johannesburg P. O. Wits 2050, South Africa
XX
FH Key Location/Qualifiers
FH
FT source 1. .2767
FT /country="Zimbabwe"
FT /db_xref="taxon:223337"
FT /mol_type="genomic DNA"
FT /virion
FT /organism="Tobacco leaf curl Zimbabwe virus"
FT CDS 141. .491
FT /codon_start=1
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProt/TrEMBL:Q91M91"
FT /gene="V1"
FT /product="V1"
FT /protein_id="AAK69686.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEESYEPNTLGHDLIRDL
FT ICVIRARDYVEATRRYNHFHARLEGSSKAELRQPIYQPCCCPHCPRHKQTTVVDLPAQL
FT PKAQNVPDVQKS"
FT CDS 301. .1077
FT /codon_start=1
FT /db_xref="GOA:Q77I78"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProt/TrEMBL:Q77I78"
FT /note="coat protein"
FT /gene="V2"
FT /product="V2"
FT /protein_id="AAK69687.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRAAVPIVQGISKRRSW
FT TYRPSYRKPRMYRMYRSPDVPRGCEGPCKIQSFDQRDSVVHTGTVRCLSDVTRGGGLTH
FT RTGKRFCIKSIYVLGKIWMDENVKKSNHTNTCMFWVVRDRRPYGPSPQDFGQVFNMFDN
FT EPSTATVQNDKRDRYQVLRRFQVTVTGGPSGCKEAAIVKRFFRLNHHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYASLKIRMYFYDSVSN"
FT CDS complement(1074. .1478)
FT /codon_start=1
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProt/TrEMBL:Q91M90"
FT /gene="C3"
FT /product="C3"
FT /protein_id="AAK69690.1"
FT /translation="MDLRTGEDITAHQAQNGVFTWEITNPLYFKITKHHIRPFFKNYDI
FT IHLQIRFNYNLRKALGIHKCFLNFQVWTTLQPLIGHFLRVFRTQVLKYLDNLGVITLNN
FT VIRAVAHVLYDVLDGTIDVHEYHIIKFKLY"
FT CDS complement(1219. .1626)
FT /codon_start=1
FT /db_xref="GOA:Q91M89"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProt/TrEMBL:Q91M89"
FT /gene="C2"
FT /product="C2"
FT /protein_id="AAK69689.1"
FT /translation="MQHSSPSTGHSTQIPIKVLHRKAKTKAIRRKRIDLACGCSYYIHI
FT GCRNHGFTHRGRHHCASSSEWRFYLGDNKSALFQDNQTPHKTVLQELRHHTPSNTIQLQ
FT PQEGIGDSQMFSELPGLDDLTASDWSFLKSI"
FT CDS complement(1535. .2614)
FT /codon_start=1
FT /db_xref="GOA:Q91M88"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProt/TrEMBL:Q91M88"
FT /gene="C1"
FT /product="C1"
FT /protein_id="AAK69688.1"
FT /translation="MAPPKRFQINSKNYFVTYPKCSLTKEETLSQLLNLETPTNKKYIK
FT ICRELHENGEPHLHVLIQFEGKFNCKNHRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQVDGRSARGGCQNANDACADALNAGSAEAAMAIIREKLPKDFIFQYH
FT NLKTNLDRIFQAPPEPYISPFSSSSFDQVPEELEGWVSENVCGAAARPWRPNSIVIEGD
FT SRTGKTIWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHWKEFFGAQRDW
FT QSNTKYGKPIQVKGGIPTIFLCNPGPTSSYREFLEEAKNYALKSWTLKNATFITLDRPL
FT YSDTNQSPPPQSQDESHSP"
FT CDS complement(2200. .2457)
FT /codon_start=1
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProt/TrEMBL:Q77I77"
FT /gene="C4"
FT /product="C4"
FT /protein_id="AAK69691.1"
FT /translation="MGNLISTCLFSSRENSTARITDSSTWYPQPGQHISIQTFRELNQA
FT PTSSPTSTRMETHLNGENSRSTDEVLEEAARMLTTHAPTL"
XX
SQ Sequence 2767 BP; 720 A; 551 C; 649 G; 847 T; 0 other;
AF350330 Length: 2767 April 19, 2005 08:54 Type: N Check: 8461 ..
1 accggatggc cgcgccccgg aaaagaagtg ggccccacat ttgataatga
51 tgtgccgacc aatcatatcg tagcctgaaa ggctagatat ttgttctttg
101 tctttatata cttgctcgtc aattatgggc cttgtccatc atgtgggatc
151 ctctattgaa tgagtttccc gaatctgttc acggatttcg ttgtatgctg
201 gccatcaaat atttgcaggc cgttgaggaa agttacgagc ccaatacttt
251 gggccacgat ttaattaggg atcttatttg tgttattagg gctcgagact
301 atgtcgaagc gaccaggcga tataatcatt tccacgcccg tctcgaaggt
351 tcgtcgaagg ctgaacttcg acagcccata taccaaccgt gctgctgtcc
401 ccattgtcca aggcataagc aaacgacggt cgtggactta ccggcccagt
451 taccgaaagc ccagaatgta ccggatgtac agaagtcctg atgtgcctcg
501 cggttgtgag ggtccgtgta agatacagtc atttgatcag cgtgattccg
551 ttgttcatac gggtactgtt aggtgtctta gcgatgtcac taggggtggt
601 ggtcttacgc atcgcactgg taaacgcttt tgtattaagt cgatatatgt
651 attaggtaag atctggatgg atgagaacgt gaagaagtct aaccatacta
701 acacatgtat gttttgggta gttagagata ggcgccctta tggacctagt
751 ccccaggatt ttggtcaggt gtttaacatg tttgataacg agcccagtac
801 tgccacggtt cagaacgata agcgtgatcg ttatcaagtt ctacgtagat
851 ttcaggtaac tgtaacggga ggcccttcag gatgcaagga ggctgctatc
901 gttaagagat ttttccgtct gaatcatcat gtgacgtata accatcaaga
951 ggccgcaaag tacgagaatc atacggagaa tgctttatta ttgtatatgg
1001 catgtacaca tgcctctaac cctgtatatg caagtctaaa gatacgaatg
1051 tatttctatg attcagtatc gaattaataa agtttgaatt ttattatatg
1101 atattcgtgt acatcgattg ttccatctaa tacatcatac aatacatgtg
1151 ctactgctct aattacatta ttaagcgtaa tgacacctaa attatccaaa
1201 tactttagga cttgtgtcct aaatactctt aagaaatgac caatcagagg
1251 ctgtaaggtc gtccagacct ggaagttcag aaaacatttg tgaatcccca
1301 atgccttcct gaggttgtag ttgaatcgta tttgaaggtg tatgatgtcg
1351 taattcttga agaacggtct tatgtggtgt ttggttatct tgaaataaag
1401 cggatttgtt atctcccagg taaaaacgcc attctgagct tgatgcgcag
1451 tgatgtcttc ccctgtgcgt aaatccatga tttctgcagc cgatatgtat
1501 gtagtaggaa cacccgcagg ctaaatctat tcgcttacgg cgaatggctt
1551 tcgtcttggc tttgcggtgg aggactttga ttggtatctg agtagagtgg
1601 cctgtcgagg gtgatgaatg ttgcattctt gagcgtccag cttttgagtg
1651 cgtaattctt cgcctcttct aggaattctc tatatgagga tgttgggcct
1701 ggattgcaga ggaagatagt gggaatgccg cctttaactt gaattggctt
1751 tccgtatttt gtgttgcttt gccagtccct ttgggcccca aagaattcct
1801 tccagtgctt tagataatgc ggatcaacat catcaatgac gttataccat
1851 gcgtcattag aatatacttt tggacttaag tctaaatgac cacataagta
1901 attatgtggc cctaatgacc tagcccaaat agttttgccg gtacgactat
1951 cgccttctat tacaatacta ttgggcctcc aaggccgcgc agcggcacca
2001 cacacattct cagagaccca cccttcaagt tcctcaggga cttgatcaaa
2051 agaagaagaa gagaaaggag aaatataagg ctctggggga gcctggaaaa
2101 tcctatctaa attagtcttt aaattatgat actgaaaaat aaaatcttta
2151 gggagttttt ccctaataat agccatagct gcttcagcgg aacctgcgtt
2201 taaagcgtcg gcgcatgcgt cgttagcatt ctggcagcct cctctagcac
2251 ttcgtccgtc gacctggaat tctccccatt caagtgtgtc tccatccttg
2301 tcgatgtagg acttgacgtc ggagcttgat ttagctccct gaatgtttgg
2351 atggaaatgt gctgacctgg ttggggatac caggtcgaag aatcggtgat
2401 tcttgcagtt gaattttccc tcgaactgaa taagcacgtg gagatgaggt
2451 tccccatttt cgtgtagctc tctgcagatt ttgatgtatt ttttattggt
2501 gggtgtttca aggtttaata attgggagag tgtctcttcc tttgtgagag
2551 agcattttgg ataagtgacg aaatagtttt tggaatttat ttgaaagcgt
2601 ttcggaggag ccatttggtc aatgggtacc gattgactct caaattgcat
2651 tctcctggta tatcggtacc caatatatag tgggtaccga atggcacaaa
2701 tgtaatttgg ggaaagtaat ttaaaattca aattttaaac gcttaaagcg
2751 gccatccgat taatatt