Sequence of DPV Blackcurrant reversion virus
Blackcurrant reversion virus RNA1, complete sequence.
ACC No: AF368272
Dated: 2003-05-29 | Length: 7711 | CRC: -1978994342
!!NA_SEQUENCE 1.0
ID AF368272 standard; genomic RNA; VRL; 7711 BP.
XX
AC AF368272;
XX
SV AF368272.1
XX
DT 04-DEC-2001 (Rel. 70, Created)
DT 29-MAY-2003 (Rel. 75, Last updated, Version 2)
XX
DE Blackcurrant reversion virus RNA1, complete sequence.
XX
KW .
XX
OS Blackcurrant reversion virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC Nepovirus; Subgroup C.
XX
RN [1]
RP 1-7711
RX MEDLINE; 21436430.
RX PUBMED; 11551655.
RA Pacot-Hiriart C., Latvala-Kilby S., Lehto K.;
RT "Nucleotide sequence of black currant reversion associated nepovirus RNA1";
RL Virus Res. 79(1-2):145-152(2001).
XX
RN [2]
RP 1-7711
RA Lehto K.M., Pacot-Hiriart C., Latvala-Kilby S.;
RT ;
RL Submitted (05-APR-2001) to the EMBL/GenBank/DDBJ databases.
RL Plant Physiology and Molecular Biology, University of Turku, Turku
RL FIN-20014, Finland
XX
DR GOA; Q8V5E0.
DR SPTREMBL; Q8V5E0; Q8V5E0.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7711
FT /db_xref="taxon:65743"
FT /mol_type="genomic RNA"
FT /organism="Blackcurrant reversion virus"
FT /segment="RNA1"
FT CDS 67. .6351
FT /codon_start=1
FT /db_xref="GOA:Q8V5E0"
FT /db_xref="SPTREMBL:Q8V5E0"
FT /note="encodes N-terminal protein, nucleotide binding
FT protein, VPg, viral cysteine-like protease, and
FT RNA-dependent RNA-polymerase"
FT /product="polyprotein"
FT /protein_id="AAL36026.1"
FT /translation="MVKIGSDTLAPKQLVLENKYIAACLSKPANFALSFLAQGASLKPS
FT VVARAAINGVIACDTTTFQLLAMDGTPLSFAAAAVVVRQFQLAHNRFVKIGLRQFYKEC
FT TRRCNAFNLQKAARQSRERRAACKRILASLDADLPCSRSSRRAIVTAHYAGVATAARKS
FT ALFRQMRADKRASRALAAAMQPLVLAPPTCARIPYVCPLSSSVEESVSRRSLERCSKRV
FT PREHASPRVASEMQPFADRPRLFSRVLLLPLSEITRAFFSRVFVPGSAMYDCATDLAHV
FT VLDWWSITPMAHYLAMLDNFLGTPTEESVRQASTNLLEEVEAMRALCRDHRANGVFAWV
FT TETAGTIGSTLKTAAVAPFHGAGVALKAVLTPCASATLAWGEKFFQTLKSKFFEFLKPY
FT IQHAIYASAEIEKYWAFIHGWATKMWNNVGVELQALGDAAWWAIGITMVCGIVTLVEKL
FT LVYLGALNAGGILCSLMLTGLLGAAGLLATGKFAEASSTLVGAMRSLIFTLFGSWKPTE
FT ASDGLTCNANALDFPLKVLETVGTGLISAPLGTLQYIGKYGQAMDQIRKGKDAIKEFVG
FT FCMDRVADAWDYMTGRKDSFLREIASAAKVDIVYWIKQTQSVLLQAQTIAVTDIVLLDT
FT VTHLLYKGQILQLTLAKASRTTSLDYARIVSTLIGELTKIRATCARAGSFDGRRPEPFW
FT CYIYGKSHCGKSLFMEDVSRALLKENGHAPNDIYAKNARDSFWSGYLQHACVQVDDLSA
FT CVTRPSLESEFLQLVGSKMYSLNMAAVEDKGMSFNSSIIVTTANVYTAPTSAEITDKDA
FT YGNRRNVVVQCRAAPDVEFDPRNPSASCEARLVHRTDESPLGNGQWRNCSAVLEDIIHH
FT AAIHRNKENLLMENYRERSDTQHPVFVGAKSFIHRLAKEKNFAHIVCDDVLYYHDSYID
FT STRVSEGTINIGMEDACIQSVVQWSELVGGVKDLGLLYAFVHAFTEGPCHVDSVEALNS
FT EATSCQRDFFQSLSLLERIYMRLVQKQLDRIRANPDFLFSVDIKTRILQSFRHGYDEMI
FT THGGKVLAIFAALLLVLLLYSSFFALYQTFVAGTSSALVSAGMITQLSANAGSVCTSAS
FT NPSGAASYVSSNIPIHHRWRSNYSERSYALNSNLEDKYLLDLLVWLQIPGDSIISCIRF
FT KGRSLLLTKHQALAIPEGARVYCNYYGRGRAVQTIPLSWSYKKVREFADTEAVLFLDAQ
FT LSTMPAGREHYFNVPVERLPSVFDMNGVVMKQKRYMTDSDDSLAAFTPNQPVVNTWENS
FT RAKLNCERQGINTFAYGGNYRNELPRSISSNCNTSPEDCGAIMTMIFEGRRVVVGMHVA
FT SGKNPQGRYMSTACLLPDYHEDLSLNSMLQYTPYDGICKEGYRQIGNIENIGARPYTSG
FT KTAFVAVPQHLLYSPPVLQEKLPGSAQPVTIQVEVKQPAILSKDDPRIPEGTSYDPLID
FT GMAKFSHPMAVLDENVCNEVAQDIVESWHDCFQDLQDVSDEIAINGSTEMDYEPFNLQS
FT SEGYPYVTQRKPGESGKIRFFEMDPYTGLKSLIPNTLPAMRYEALQRDCFTSVPEMVCI
FT ETPKDECLPLRKICIKPKTRLFSILPLEFNLLLRKKFLHFSSSLQMHRDTLPTQVGVNP
FT YSREWGELLQRLRAQSSVAINCDYASFDGLLTGQILEKIGTMINKMYIGSEASKIQRLN
FT LLMSIVNRKSICGARVYEVRAGIPSGCALTVLLNSIFNEFLIRFVWRTTIIGVPRERFS
FT QYVTLLIYGDDNLIAVHPDYLPHFNGEIIRTRLADVNVIITDGSDKTAEKIEEKPLVQL
FT DFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMGAGSIHIALQNNVHNALLELYLHGNE
FT TWFNHLRDFYRKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQMFDVPVDGGRLRAMMA
FT NQGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVG
FT RLPSQDWVTKFKSSAHRVTAEIRKAHASGKAIYFRDDPPYVANWCAAIGFAQGLGYDYK
FT SMINLYHDVSVPGSDALYFYFEQRARRALPEPYIPPHLRTRVR"
XX
SQ Sequence 7711 BP; 1890 A; 1662 C; 1859 G; 2300 T; 0 other;
AF368272 Length: 7711 January 7, 2004 15:41 Type: N Check: 3990 ..
1 tttcaaaagc tctttcctag aacttttgcc acctctttct ccttatcttc
51 tcttcttgat tttacaatgg tgaaaatagg ttccgatacc cttgctccta
101 agcagttggt tcttgagaac aaatacattg ctgcgtgcct ttctaagcca
151 gcaaatttcg ctctttcttt ccttgctcag ggtgcctccc tgaagcctag
201 tgtggtcgct cgtgcagcca tcaatggtgt cattgcctgt gacaccacca
251 ccttccaact cctggcgatg gatgggactc ccctatcttt cgccgctgca
301 gcggttgtgg tgcgccaatt tcaattggcc cacaaccgct ttgttaagat
351 tggcttgcgc caattttaca aggagtgcac aaggcgctgc aacgccttca
401 accttcagaa agctgctcgc cagagcagag aacgtagagc cgcctgcaag
451 cggattcttg cgtccttgga tgcagacctg ccatgtagca ggtcttctcg
501 aagggccata gtgacggccc attatgctgg agtcgcaact gcggctcgga
551 agagtgctct cttccgccaa atgcgcgcag acaagcgcgc atctagggct
601 ttggcagctg ccatgcagcc cttggttctg gctcctccca cctgtgcacg
651 cataccttat gtgtgcccac tttcctcttc tgtggaggaa agtgtttctc
701 gacgctctct tgagcgttgt tccaagcgtg ttccacgaga acacgcctct
751 ccccgggttg cgtctgaaat gcaacccttt gctgatcgcc cccggctttt
801 ctcccgggtg ttgctcctcc ctctctcaga gataacacgg gcgtttttct
851 ctcgtgtttt tgttcctggg agtgccatgt atgattgtgc tactgatctt
901 gcacatgttg tacttgattg gtggtccatc acccccatgg cacattactt
951 ggccatgcta gacaattttc ttggcacccc aactgaagag agtgtgcgac
1001 aggcttctac aaatctttta gaggaagttg aagccatgcg tgctctttgt
1051 agagatcacc gtgcgaacgg tgtgtttgct tgggtgacag aaactgccgg
1101 tacaattggt agcaccctaa agactgctgc tgtagctcct ttccatggag
1151 ctggcgttgc gcttaaggcg gttttaactc cttgtgcttc agctacttta
1201 gcgtgggggg aaaaattttt ccagaccctc aaatccaaat tttttgagtt
1251 cctgaaaccc tacatccaac atgctattta tgccagtgct gaaattgaaa
1301 aatactgggc atttatacat ggttgggcca ccaagatgtg gaacaatgtt
1351 ggagtagagt tgcaggcgct tggtgatgct gcttggtggg ccattggaat
1401 taccatggtt tgtggtattg ttacccttgt tgaaaagctc ttggtttatc
1451 ttggcgcttt gaatgcaggc ggtatattgt gctctttaat gctcactggt
1501 cttctaggtg ctgcaggtct attggcgact gggaagtttg ctgaggccag
1551 tagtactctt gttggcgcca tgcgttcttt gatattcaca ttatttggat
1601 catggaaacc aacggaggcc agtgatggac ttacttgtaa tgccaatgct
1651 ctagatttcc cattgaaagt tttggaaact gtaggtacag ggttgatatc
1701 tgctccactc ggtacactac agtacattgg gaaatatggg caagctatgg
1751 accaaatccg aaagggcaag gatgccatca aagagtttgt tggattctgc
1801 atggatcgtg tagccgatgc ttgggattat atgacaggta gaaaggattc
1851 ctttctgcgt gaaattgcgt ccgctgcaaa ggttgatatt gtgtattgga
1901 tcaaacaaac acagagtgta ctactacaag ctcaaacaat agcggttact
1951 gacattgtcc ttttggatac agttacccat ttgttgtaca aagggcaaat
2001 actgcaactc actcttgcca aggcttctcg cacaacatct cttgattatg
2051 cgcggattgt aagtacgctc attggtgagc ttacaaaaat acgtgcaaca
2101 tgtgctcgtg ctggaagttt tgatggtcgc cgcccagaac cgttttggtg
2151 ctatatctat ggcaagtccc attgcggcaa atcactattt atggaggacg
2201 tttcacgcgc tttgcttaaa gagaatggtc atgctcctaa tgacatttat
2251 gcgaagaatg cgcgtgacag tttttggtcc ggatatctgc agcacgcttg
2301 cgtgcaggtg gatgatctct cggcctgtgt aactcgaccc tcccttgagt
2351 ccgagttttt gcaactggtg ggttcaaaga tgtattccct gaacatggct
2401 gctgttgaag acaagggcat gagttttaat agctcgatta ttgtcacgac
2451 agcaaatgtg tatactgctc ctactagcgc agaaatcact gataaggatg
2501 catacggaaa taggcggaat gtggtggtgc agtgtcgagc tgcgcctgat
2551 gttgaatttg atccgcgcaa tccttccgca agttgtgaag cacgcttagt
2601 gcatcgcact gatgagagcc ccctaggaaa tgggcagtgg agaaactgtt
2651 ccgctgtgct tgaggatatc attcaccatg ctgccatcca tcgcaataaa
2701 gaaaatcttc ttatggagaa ctatagggag cggtcggaca cgcagcatcc
2751 agtttttgtt ggggctaaaa gctttatcca tagacttgca aaggaaaaga
2801 actttgctca catagtctgt gatgatgtgc tctattacca cgactcatac
2851 attgatagta ctcgcgtcag tgagggtacc ataaacattg gtatggagga
2901 tgcttgtata cagagtgtgg tacagtggag tgaattagtg ggtggagtga
2951 aggaccttgg tcttctctat gcatttgtac atgctttcac agagggacca
3001 tgtcatgtag atagtgttga agctttgaat tctgaagcta cgagctgtca
3051 gcgcgatttt ttccaatcgc tgtcgttgct ggaacgcatt tatatgcggc
3101 ttgtacaaaa acagctcgat agaattcggg cgaatccaga ttttttgttt
3151 tctgtagata ttaaaactag aattcttcag agttttcgtc atgggtatga
3201 tgaaatgatt acacatggcg gaaaggtgtt ggccattttt gcggcccttc
3251 ttttggtttt gttactctat tcttccttct ttgctttgta tcagacattt
3301 gttgctggta ctagtagtgc tcttgtgtct gctggtatga taacccaact
3351 tagtgcaaat gctggttcgg tctgcacttc tgcgtcgaat ccttctggag
3401 ctgcctcgta tgtatcgagt aatataccca ttcaccacag gtggcgttct
3451 aactattctg agagatcata tgcactcaat tccaatcttg aggataaata
3501 tctccttgat cttctcgtgt ggttacaaat tccaggagat tcgataatct
3551 cgtgtattcg tttcaaggga agaagtttgc tacttaccaa acaccaggcc
3601 ctcgccattc ctgagggggc ccgtgtttat tgcaattact atggccgtgg
3651 tcgtgctgtg caaacaattc ctctatcatg gagttataag aaagtgcgcg
3701 aatttgcgga cactgaagcg gttcttttcc ttgatgccca gctttcgaca
3751 atgccagcag ggcgggagca ttatttcaac gttcctgtag aacgactacc
3801 ctcagtattt gacatgaatg gggtcgtaat gaaacagaag cgttacatga
3851 cagactcaga tgatagcctt gcagctttta ctcccaatca acctgttgtc
3901 aatacatggg agaattcgcg tgccaaactc aactgtgagc ggcaaggtat
3951 aaacaccttt gcttatggag gcaactatag aaatgagcta ccacgctcta
4001 tttcgtcaaa ctgtaacacc agtcctgagg attgtggtgc aattatgacc
4051 atgatatttg aggggagaag agttgtcgtt ggcatgcatg ttgcctcagg
4101 gaaaaaccct caaggtcgct atatgtccac agcatgtttg ctcccagatt
4151 atcacgagga cttgtcgctg aactccatgc ttcaatatac accatatgat
4201 ggtatttgta aggagggtta ccgacagata ggaaatattg aaaatattgg
4251 tgcgcgtcca tatacgtcag gtaaaactgc gtttgtggcc gtgccccaac
4301 atcttttata tagtcctccg gtgttgcaag agaagttgcc tggtagtgcg
4351 caacctgtca cgatacaggt tgaggtgaaa cagccagcca ttttgtctaa
4401 ggatgatcca agaataccag aggggacttc ctatgatcct ttgattgacg
4451 ggatggccaa attttcacat cctatggctg tacttgatga aaatgtgtgc
4501 aatgaagtcg cacaggatat agtcgaatcg tggcatgatt gcttccaaga
4551 cttgcaagac gtctctgacg agattgcgat aaatggttcc actgagatgg
4601 actatgagcc cttcaatctt caatcttcgg agggatatcc ttatgtgact
4651 caacgcaaac cgggagaaag tggcaagatc cgtttttttg aaatggatcc
4701 ttacactggg ctcaagagtc tcattcccaa tacactacca gctatgcgct
4751 atgaagcgtt gcagcgggat tgtttcactt ccgttccaga aatggtgtgt
4801 atagagacgc ccaaagatga gtgcttgcct ctgcgtaaaa tttgtatcaa
4851 gcccaaaaca aggctgttct caatcttgcc actggagttt aatctccttc
4901 tccggaaaaa atttctccac ttctcctcat cgctccagat gcatcgtgac
4951 actctcccca cccaggtagg tgtgaatcca tattcgaggg agtggggtga
5001 gcttttgcaa cgcttgcgtg cccagagcag cgttgctata aattgtgatt
5051 acgccagttt tgatggtctg ttgactggtc aaatactgga gaaaataggt
5101 accatgatca acaagatgta tatagggtct gaagcctcta aaattcaacg
5151 tttaaatttg ctcatgtcta ttgtgaatag aaagagcata tgtggtgcgc
5201 gagtttatga ggtgagagcg ggaatccctt caggatgtgc gctgacagtg
5251 ctgttgaatt ccatatttaa tgagtttttg attcgttttg tatggagaac
5301 aaccattatt ggtgttcctc gggagcggtt ttcccaatat gtgacattgt
5351 tgatctatgg tgatgataat ctcatagcag tacaccccga ttatctacct
5401 cattttaatg gggaaattat ccggacgcgt cttgctgacg ttaatgtcat
5451 tatcacagat ggtagtgata agactgccga gaaaatcgag gaaaagccat
5501 tggttcagct tgactttctg aaacgtcgat ttaggaagtt gaacgatggt
5551 actgtctatg ccccacttga tttagcatcg gtttacacca gtctccaaaa
5601 tgttaccatg ggagctggct ctatacatat tgcgttgcaa aacaacgtcc
5651 ataatgcgct cctagagtta tatttacacg gtaatgagac atggtttaac
5701 cacttaagag atttttatag gaagtctcat gcgtgggtta accttccgag
5751 ttggcgtgag gcttttgcat ttcaccaggg acaaatttca ggagtcacac
5801 catggactcc ctatcaaatg tttgacgtcc ctgttgatgg tgggcgcctt
5851 agagctatga tggctaatca aggggaagcg gctttttcca cacacttggg
5901 tagagaaata tatatctgcg gcccgaagtg gtgtgtttct gacccagaac
5951 atcaatttgt ggtgtctact actcctttga ggagcgcaga ccggggcagt
6001 ggtatccacc gggctattga atatccctgt aacggtgtgg gaagactgcc
6051 ttcacaagat tgggtcacca aatttaagag ctccgcgcat agagtaacag
6101 ctgaaatcag gaaagcgcat gcaagtggaa aggcgatata ttttcgcgat
6151 gacccaccgt atgttgctaa ctggtgtgca gctattggat ttgcacaggg
6201 tttgggttat gattataaat ctatgattaa tctgtatcat gatgtatctg
6251 tgccaggatc tgatgctctt tatttctatt ttgagcaacg ggctcggcgt
6301 gctttgcccg aaccatatat ccccccccat ctacgcacgc gtgttaggta
6351 gcccaatagt gggttttata ggtaaatagc tagtatctca ctactcggat
6401 tcccctctgc cgtcatagag gggtttcaag ggatgtcatc atcagcgttg
6451 gttatggcca cgatgtgaat catggagtaa cgcaccatga gtcccccgat
6501 tattcggtcc caagagacta cacttgggtt ggaaatgatg gtaaaccatc
6551 cgtatgggtc tatgctcata tgttaagagt tgtcttatca tatatggctt
6601 ctacataagg tcggtacccc tgaaataggg atcctgttcg cgtgcgtggt
6651 tgtagaagtg ctaagtgtgg ttacaacatt aatatgactt gggagacaaa
6701 gtctcatcca ccttggaacc gtacagggat ataactcaaa gcggaatggt
6751 agtgatctac ttgccctatc agtagggatg ggaacgctca ttattagcaa
6801 acccctaccc tgaacattag gagcctcagc aatatgaggc agaagactaa
6851 ggagaaagct cctctggatg tgtaattcat ctactcgaga tgggagtcat
6901 gccatcgtgt tattttattt tcttgcattg tatttcaatt ccaagaaagt
6951 ttctggatct aaaccagacc caggtgggtg gaaccttctg cgtctacccg
7001 gtttggtatt ttacgattaa aatacccagg tctactgctt ccgagcctga
7051 ttaaaatctt aaagcggcca tcgttcagta cttgctggca tggtgacatg
7101 agtgatgatg ctttgtgaat catcgaatag tttcttcgtt tctatttctg
7151 ggaaatcctt ttggcgagtg cccatgaaaa taatgaagcg tctagcgcac
7201 gatatagtgc tatctctgct ccaggagatt gagctggaaa tatagtcaat
7251 cactttgtga ttaaggtatt tctggatggg cccgttgcga agggttttcg
7301 ctcaaggttc acatgactgt aaattgtaag tgtactcaag atgtagctag
7351 tctaggcaac tagttacatt ggatgaggtc ccgattgata cggggggata
7401 attaatccca gcttacggtg tgtgccgact tgtatggaag tgtccatacc
7451 gcattttgct tgtttttaga cataaacaag tactctttac tgcgtgtaat
7501 acgctggtgt ctcattttat actagcgttg cagcgctagg actacctaag
7551 acaaccgtac tatacgtttg ctttatttat ttttgtttac tcctgtttag
7601 caggtcgtgc cttcagtaag cacacaaaaa tattttcatt tttaggtttt
7651 ggttaagagt cattttattg agcacttttc ttttagtgaa tagagtctga
7701 aatgtccttt c