Sequence of DPV Sugarcane yellow leaf virus
Sugarcane yellow leaf virus isolate SCYLV-N6 protease and RNA-dependent RNA polymerase genes, partial cds; capsid protein and movement protein genes, complete cds; and aphid transmission factor gene, partial cds.
ACC No: AF369926
Dated: 2002-01-22 | Length: 2835 | CRC: -2100624498
!!NA_SEQUENCE 1.0
ID AF369926 standard; RNA; VRL; 2835 BP.
XX
AC AF369926;
XX
SV AF369926.1
XX
DT 27-JUN-2001 (Rel. 68, Created)
DT 22-JAN-2002 (Rel. 70, Last updated, Version 2)
XX
DE Sugarcane yellow leaf virus isolate SCYLV-N6 protease and RNA-dependent RNA
DE polymerase genes, partial cds; capsid protein and movement protein genes,
DE complete cds; and aphid transmission factor gene, partial cds.
XX
KW .
XX
OS Sugarcane yellow leaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Unassigned Luteoviridae.
XX
RN [1]
RP 1-2835
RX MEDLINE; 21635511.
RX PUBMED; 11773408.
RA Moonan F., Mirkov T.E.;
RT "Analyses of Genotypic Diversity among North, South, and Central American
RT Isolates of Sugarcane Yellow Leaf Virus: Evidence for Colombian Origins and
RT for Intraspecific Spatial Phylogenetic Variation";
RL J. Virol. 76(3):1339-1348(2002).
XX
RN [2]
RP 1-2835
RA Moonan F., Mirkov T.E.;
RT ;
RL Submitted (12-APR-2001) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, The Texas A & M Agricultural Experiment Station and Texas
RL A & M University System, TAES-2415 East Highway 83, Weslaco, TX 78596, USA
XX
DR SPTREMBL; Q91L44; Q91L44.
DR SPTREMBL; Q91L45; Q91L45.
DR SPTREMBL; Q91L46; Q91L46.
DR SPTREMBL; Q91L47; Q91L47.
DR SPTREMBL; Q91L48; Q91L48.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2835
FT /country="Argentina: Santa Rosa"
FT /db_xref="taxon:94290"
FT /virion
FT /organism="Sugarcane yellow leaf virus"
FT /isolate="SCYLV-N6"
FT /clone="Q136"
FT CDS <1. .677
FT /codon_start=3
FT /db_xref="SPTREMBL:Q91L48"
FT /note="ORF1"
FT /product="protease"
FT /protein_id="AAK66840.1"
FT /translation="DIADYAEEVYEKALAEPKVWKPASGKYWWEMAEEEDDFVVEAKSP
FT PPDKPVENATAKEQTPASTVEKAMVADQPTPXQGNEPSGADHLKTPEXTPLKQDESTKE
FT LLNNIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKRKTSNTSSKPHTNG
FT KSPPVTSQGSGNAANSPRYTIPQNRRAHNGESASSQSTQKWRPKSPVSGGPPSALKPKR
FT QV"
FT CDS <218. .1936
FT /codon_start=1
FT /db_xref="SPTREMBL:Q91L47"
FT /note="ORF2; produced by predicted -1 translational
FT frameshift of ORF1 gene product"
FT /note="ribosomal slippage"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AAK66841.1"
FT /translation="SADSXPGKRAKWRRPLKNTGXHPAQARRIYKRVAQQHRLAVDSKD
FT RPEFHCNEGGGETAASGPEQTAAERREEVAQKTQDLEHFFQAAYKWEESTSDIPGFRKC
FT GKLPALYHPPKPKSTQWGERIISEHPEMASKVAGFGWPSFGAQAEETSLRLQAARWLKR
FT AESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHTSSSDSLIWSDFLKDFKEAVNSLELDA
FT GIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWNRLQKMSQVDFQEMTPEQLVREGLCDP
FT IRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKRDIALWRAIPSXPGFG
FT LSTDREAREFIESLSKTVGCSPAEVIHGWRNKIVPTDCSGFDWSVADWMLEDDMEVRNL
FT LTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQKSGSYNTSSSNSRIRVMA
FT AFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLEFCSHVFEQEDLAXPLNVN
FT KMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLVATLHEWLVPGAATK"
FT CDS 2131. .2721
FT /codon_start=1
FT /db_xref="SPTREMBL:Q91L46"
FT /note="ORF3"
FT /product="capsid protein"
FT /protein_id="AAK66843.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTVDDHKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK"
FT CDS 2131. .>2835
FT /codon_start=1
FT /db_xref="SPTREMBL:Q91L45"
FT /note="ORF5; produced by translational readthrough of the
FT stop codon of ORF 3; readthrough occurs at a frequency of
FT about 25%"
FT /transl_except=(pos:2719. .2721,aa:OTHER)
FT /product="aphid transmission factor"
FT /protein_id="AAK66844.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTVDDHKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPAPKY
FT FGYQGVPNNIVKT"
FT CDS 2162. .2614
FT /codon_start=1
FT /db_xref="SPTREMBL:Q91L44"
FT /note="ORF4"
FT /product="movement protein"
FT /protein_id="AAK66842.1"
FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT ATGMFSLSRLTITKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT
FT QLQVQSHLKWIHPAPKQQQAPRLLASPSKGTPRKSSRPPSSGGKIS"
XX
SQ Sequence 2835 BP; 795 A; 772 C; 690 G; 572 T; 6 other;
AF369926 Length: 2835 December 18, 2002 17:03 Type: N Check: 2848 ..
1 cagacattgc tgattacgcc gaggaggtgt atgagaaagc ccttgcagag
51 cctaaagtgt ggaaacctgc cagcggtaaa tactggtggg aaatggctga
101 agaagaggat gattttgtcg ttgaggcaaa gtcacctccc cctgataaac
151 ctgttgagaa cgctacagca aaagagcaga ctccagcttc gactgtcgag
201 aaagctatgg ttgctgatca gccgactcca kaccagggaa acgagccaag
251 tggcgccgac cacttaaaaa caccggaayc caccccgctc aagcaagacg
301 aatctacaaa agagttgctc aacaacatcg tctcgcagtt gattcaaaag
351 atcgacctga gttccattgc aacgagggtg gaggagaaac tgctgcgtca
401 ggcccagaac aaacagcagc agaacggagg gaagaagtcg cccagaaaac
451 gcaagacctc gaacacttct tccaagccgc atacaaatgg gaagagtcca
501 ccagtgacat cccagggttc aggaaatgcg gcaaactccc cgcgctatac
551 catcccccaa aaccgaagag cacacaatgg ggagagcgca tcatctcaga
601 gcacccagaa atggcgtcca aagtcgccgg tttcgggtgg ccctccttcg
651 gcgctcaagc cgaagagaca agtctgagac tccaagcggc acgctggctt
701 aaacgagctg agtcagcgga aaagccgaca gaaaaacaac gcaagctcgt
751 catygatcgt gtggtcaagg catatgaacc gtgtagaacc aatgccccac
801 acaccagctc ctctgacagc ctcatctggt ccgacttctt gaaagatttc
851 aaggaggctg tcaactcact agaactcgat gcagggatag gtctcccata
901 caagcttctt cacaaagaca ctcatcgtca gatggttgaa gaccccaaat
951 tcctgccgct cctgacgcga ttgacctgga accgtttaca gaagatgtcc
1001 caggttgact tccaggagat gactcctgaa caactagtga gagaaggatt
1051 gtgcgatccg attcgtttgt tcgtcaaagg agaaccgcac aagcaggcaa
1101 aacttgatga agggcgctac cgcctcatca tgtcagtctc gctggtagat
1151 caactggtag cccgggtttt gtttcaggca caaaacaaaa gagatatagc
1201 tttgtggaga gctatccctt caragcccgg tttcggctta tccacagaca
1251 gggaagcacg cgaattcaty gaatccctgt ccaagacagt agggtgttcc
1301 ccagcagaag tcattcatgg ctggaggaac aagatcgtac ccaccgactg
1351 ctccggtttt gactggtcag tcgccgactg gatgctcgaa gacgacatgg
1401 aagtgagaaa tcttctcaca atcaacaaca acgagctaac ccgccgcctc
1451 agggcgtgct ggttgaagtg catcacaaac tccgtgattt gcacatccgg
1501 cggtgtcttg tacgcccaaa ctcatcctgg agtgcaaaaa tctggatctt
1551 ataacacgag ttcatccaat tccaggattc gagtaatggc cgcttttcat
1601 tgcggcgcag attgggcgat agccatggga gacgatgcac ttgagtctcc
1651 aaactccaac atcaacgcgt accaaaagtt ggggttcaaa gtcgaggttg
1701 cctcacagct agaattttgc tcacacgtct ttgagcagga ggacctcgcc
1751 akgccgttga acgtaaacaa aatgctttac cgtttgatct ttggatacaa
1801 tccggcctgt ggcaacgcgg aggtattgtg taattacctc caagctgtgg
1851 cttctgttct caacgagctt cgccatgatc cacagctagt tgctaccctc
1901 catgagtggc tggttcctgg cgccgccaca aaataaatac ggagggacac
1951 cccgagccac catataggtt gcaagagtgg aacgggaagt cctatagata
2001 agccgcgcga ttctggatta caaacttcta gcgggagttc tcatcggtgt
2051 tctcatcgca atccccctag tgatcatagc ggcttacctg atattcctca
2101 aaatcagtgc acacatccga gcgatagtga atgaatacgg gcgctaaccg
2151 ctcacgaagg aatgtcagaa gacgcgctaa ccgtcgtaga cagactcggc
2201 cagtggtcgt ggtccgggct cccccaggac ctagacgagt acgacgacgt
2251 agagcacgtg ttggaggaaa cgctgtgcga ggaccgggag gaagaagcaa
2301 ccgggatgtt ctcactttca cggttgacga tcacaaagcc aactcaaccg
2351 ggatcctcaa attcggaccg aacttatctc agtacgcagc gttcaacaat
2401 ggcttactca aagcctacca tgagtataaa atcacaagtc tcactattca
2451 gtataactca tgctcctccg acgcaactcc aggtgcaatc gcacttgaag
2501 tggatacatc ctgctcccaa acaacaacag gctccaagat tactagcttc
2551 cccgtcaaaa ggaacgccaa gaaagtcttc ccggccccct tcatcagggg
2601 gaaagatttc atgactacgt cagctgacca gttttggttg ctgtacaaag
2651 ggaatggaga ctcgagccta gcaggacaat tcgtctgccg atttgaatgc
2701 cttttccaga atcccaaata ggtaggcgac gctcccccaa cacccactcc
2751 aacaccaacc ccacccgctc cgaccccggc accggctccc aagtattttg
2801 gataccaagg agtgccgaac aacatcgtga aaaca