Sequence of DPV Potato virus Y

Potato virus Y Sl 50 polyprotein gene, P1 protease region, partial cds.

ACC No: AF401603

Dated: 2002-05-26 | Length: 1056 | CRC: -523795140

                !!NA_SEQUENCE 1.0
ID   AF401603   standard; RNA; VRL; 1056 BP.
XX
AC   AF401603;
XX
SV   AF401603.1
XX
DT   27-AUG-2001 (Rel. 68, Created)
DT   26-MAY-2002 (Rel. 71, Last updated, Version 2)
XX
DE   Potato virus Y Sl 50 polyprotein gene, P1 protease region, partial cds.
XX
KW   .
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1056
RX   MEDLINE; 22004084.
RX   PUBMED; 12008009.
RA   Nie X., Singh R.P.;
RT   "Probable geographical grouping of PVY(N) and PVY(NTN) based on sequence
RT   variation in P1 and 5'-UTR of PVY genome and methods for differentiating
RT   North American PVY(NTN)";
RL   J. Virol. Methods 103(2):145-156(2002).
XX
RN   [2]
RP   1-1056
RA   Nie X., Singh R.P.;
RT   ;
RL   Submitted (24-JUL-2001) to the EMBL/GenBank/DDBJ databases.
RL   Potato Research Centre, Agriculture and Agri-Food Canada, P.O. Box 20280,
RL   850 Lincoln Road, Fredericton, New Brunswick E3B 4Z7, Canada
XX
DR   SPTREMBL; Q91HT9; Q91HT9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1056
FT                   /country="Slovenia"
FT                   /db_xref="taxon:12216"
FT                   /organism="Potato virus Y"
FT                   /strain="NTN"
FT                   /isolate="Sl 50"
FT   CDS             154. .>1056
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q91HT9"
FT                   /product="polyprotein"
FT                   /protein_id="AAK95174.1"
FT                   /translation="MATYTSTIQFGSIECKLPYSPAPFGLVAGKREVSTTTDPFASLEM
FT                   QLSARLRRQEFATIRTSKNGTCMYRYKTDVQIARIQKKREEREREEYNFQMAASSVVSK
FT                   ITIAGGEPPSKLESQVRRGVIHTTPRMRTAKTYHTPKLTEGQMNHLIKQVKQIMSTKGG
FT                   SVQLISKKSTHVHYKEVLGSHRAVVCTAHMRGLRKRVDFRCDKWTVVRLQHLARTDKWT
FT                   NQVRATDLRKGDSGVILSNTNLKGNFGRSWEGLFIARGSHEGKIYDARSKVTQGVMDSM
FT                   VQFSSAESFWKGLDGNWAQM"
FT   mat_peptide     154. .978
FT                   /product="P1 protease"
XX
SQ   Sequence 1056 BP; 332 A; 218 C; 246 G; 260 T; 0 other;

 AF401603  Length: 1056  June 18, 2002 10:22  Type: N  Check: 3821  ..

       1  cgcaaaaaca ctcacaaaag ctttcaactc taattcaaac aatttgttaa
      51  gtttcaattt cgatcttcat caaacaaact ctttcaattt cagtgtaagc
     101  tatcgtaatt cagtaagtta tttcaaactc tcgtaaattg cagaagacca
     151  tccatggcaa cttacacatc aacaatccag tttggttcca ttgaatgcaa
     201  acttccatac tcacccgctc cttttgggct agttgcgggg aaacgagaag
     251  tttcaaccac cactgacccc ttcgcaagtt tggagatgca gcttagtgcg
     301  cgattacgaa ggcaagagtt tgcaactatt cgaacatcca agaatggtac
     351  ttgcatgtat cgatacaaga ctgatgtcca gattgcgcgc attcaaaaga
     401  agcgcgagga gagagaaaga gaggaatata atttccaaat ggctgcgtca
     451  agtgttgtgt cgaagatcac tattgctggt ggagagccac cttcaaaact
     501  tgaatcacaa gtgcggaggg gtgtcatcca cacaactcca aggatgcgca
     551  cagcaaaaac atatcacacg ccaaagttga cagagggaca aatgaaccac
     601  cttatcaagc aggtgaagca aattatgtca accaaaggag ggtctgttca
     651  actgattagc aagaaaagta cccatgttca ctataaagaa gttttgggat
     701  cacatcgcgc agttgtttgc actgcacata tgagaggttt acgaaagaga
     751  gtggactttc ggtgtgataa gtggaccgtt gtgcgtctac agcatctcgc
     801  caggacggac aagtggacta accaagttcg tgctactgat ctacgcaagg
     851  gcgatagtgg agttatattg agtaatacta atctcaaagg aaactttgga
     901  agaagctggg agggcctatt catagcgcgt gggtcgcacg aaggaaaaat
     951  ctatgatgca cgttccaagg ttactcaagg ggttatggat tcaatggttc
    1001  agttctcaag cgctgaaagc ttttggaagg gattggacgg caattgggca
    1051  caaatg