Sequence of DPV Pichinde virus
Pichinde arenavirus large RNA segment, complete sequence.
ACC No: AF427517
Dated: 2002-03-17 | Length: 6997 | CRC: 1049748744
!!NA_SEQUENCE 1.0
ID AF427517 standard; RNA; VRL; 6997 BP.
XX
AC AF427517;
XX
SV AF427517.1
XX
DT 23-OCT-2001 (Rel. 69, Created)
DT 17-MAR-2002 (Rel. 71, Last updated, Version 2)
XX
DE Pichinde arenavirus large RNA segment, complete sequence.
XX
KW .
XX
OS Pichinde virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC 2-Tacaribe complex.
XX
RN [1]
RP 1-6997
RX MEDLINE; 21880832.
RX PUBMED; 11883003.
RA Zhang L., Marriott K.A., Harnish D.G., Aronson J.F.;
RT "Reassortant analysis of guinea pig virulence of pichinde virus variants";
RL Virology 290(1):30-38(2001).
XX
RN [2]
RP 1-6997
RA Harnish D.G., Zheng S., Polyak S., Scheid E.E.;
RT ;
RL Submitted (03-OCT-2001) to the EMBL/GenBank/DDBJ databases.
RL Pathology and Molecular Medicine, McMaster University, HSC 1J11, 1200 Main
RL St. W., Hamilton, Ontario L8N 3Z5, Canada
XX
DR SPTREMBL; Q915A4; Q915A4.
DR SPTREMBL; Q915A5; Q915A5.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6997
FT /db_xref="taxon:11630"
FT /note="segment: L RNA"
FT /organism="Pichinde virus"
FT /strain="AN3739"
FT CDS 31. .6603
FT /codon_start=1
FT /db_xref="SPTREMBL:Q915A5"
FT /gene="L"
FT /product="L polymerase"
FT /protein_id="AAL16099.1"
FT /translation="MEEYVSEFKDMVRKWVPEWEELSEQKNNVLAQVKDRAITIEGLKL
FT LSMLVEVDSCKKHSCRHNTRMTVNAILRELKVTCPTLPDVTPDGYCMVGDVLILLEVFV
FT RTSQEAFEKKYNQDFLKLMQLSSDLKRQNITLVPVIDGRSSYYVEYIPDWVVERLRWLL
FT LKLMDGLRTSGEEVEELEYERLISSLSSLENQSLGLESLLAVKERGLPYKVRLEKALVS
FT CINNKLTTDQCRTKIMEVFQQFKMLQLSGQHDRKLQATDREDMISKLQNHEFIQCSIKD
FT MPKSEIRLCEFCSVHILGIIDQLRQSEIRHPSIESKEYFRVLSICNKIKSQKVFNTRRN
FT TLLVLDLIMYNILCDLDKSSPGTVFREVLLMQGLPSVNDRLINVDFLIEQITKKFIKNP
FT SWLEKAKKRLSLVCSEFPLDDILPLLREPDIEYYFDLKTSILDEWGAKPYLQYKTKSRC
FT MCGGRPGRGQPDYAIMGESEFEELLKALSSLSLSLINSMKTAAVPKMKVNNADEFYGKV
FT YCDEVFFQRFGEGGSLTLLYQKTGERSRCYAVAFRSKSGGLYETKASFYCDPKRFFLPI
FT FSADVIQRTCEEMLSWLDFMSQPLLDLVSDLLRRLILCILCTPSKRIQIYLQGFRYYIM
FT AFVNEVHFKELFEKLKVVMLTPSEWQTAILIDDLILLVLNNSREEDMAKIFKFVLNVSY
FT LCHFITKETPDRLTDQIKCFEKFLEPKLKFDSVLVNPSNSMELPIEEEEKMVHDMERLL
FT SKKLESKCEGRPGINKDVLSVCLSLFNNGSLEVKPSSSCDPMTPSFTSTALDMSSNKSV
FT VVPKLDEVGEVITEYDYSSIVSAVVVEIVEHFKTKGKYKLDPKEINFKILKRLSSLIQI
FT KKESVEPDETEELLSEDQSDCLKEIETRVSKVLSKVDTNVKPDLKTPCPLERLCPKSTM
FT VIIKRETSLHDVKDFDYNLFSAEVYEDLVNLIYEDVTARSMYFADRLMNPCPLEYLIKN
FT LTLKAYKEADYFECFKYILIASDFDNRVGRYDHKSRSRLGFTDAALQIRETSRISSRES
FT NSESIAKRLDQSFFTNSSLRNLCFYSDESPTERSSVSTNVGRLKFGLSYKEQVGGNREL
FT YVGDLNTKLTTRLIEDYSESLMQNMRYTCLNNEKEFERALLDMKSVVRQSGLAVSMDHS
FT KWGPHMSPVIFAALLKGLEFNLKDGSEVPNAAIVNILLWHIHKMVEVPFNVVEAYMKGF
FT LKRGLGMMDKGGCTIAEEFMFGYFEKGKVPSHISSVLDMGQGILHNTSDLYGLITEQFI
FT NYALELCYGVRFISYTSSDDEIMLSLNEAFKFKDRDELNVDLVLDCMEFHYFLSDKLNK
FT FVSPKTVVGTFASEFKSRFFIWSQEVPLLTKFVAAALHNIKAKAPNQQADTIDTILDQC
FT VANGVSIEVVGAIAKRTFSMIIYSGFPNDPFLCLEEMDVLDWVNGSRGYRLQRSIESLF
FT PDDLLLSIIRKACRKIFYKIQSGALEESYIVTTLQQSPDDCLKQLLETCDVETEAIEDA
FT LDIRWLNLRVHGDLRLVLRTKLMSTTRTVQREEIPSLVKSVQSKLSKNYVRGAKKILAD
FT AINKSAFQSSVASGFIGVCKSMGSRCVRAKRGIQIHQDHTGKITLHRDCHHCNQRKGVY
FT CKAALSEVSEYSRPLIWDYFALVLTNACELGNWVFQKAEVPKIVTHLNNPNHFWPIKPS
FT THSELEDKVGINHILYSIRRNFPTLFDEHISPFLSDLNMLRLSWVQKIKFLDLCVAIDI
FT TSECLGIVSHIIKHRREELYIVKQNELAMSHSRESHPLERDSTLSQRVCANFLIQILFE
FT SMLVPVIMSTSQFKKYFWFGEVELLPNNAQHDLKQLTQFVCDCKKNNTSRTMNLDDLDV
FT GFVSSNLILSCANLNISVFINELDWMNRDDYENMEQHILASPSEIIPIELNLTFSHKRV
FT SHKFRYERSTNYILKLRFLIERGSLLDSLDCDGYLLLKPHSVEYYVLNPLKSHKLDGVS
FT LLVLNPLINGKDVLDFNDLLEDQDVRFKSRSAVFQKVKLDMKDYFKDLKNKFSYKLIGP
FT DVGMQPLILENGLIKKEQSVSRLEVNLDSKVVIIRLEALEPEKRSKFIANLFQYLSSAQ
FT SHNKGIIMTEQDLRYMIENFPEVFEHMLHDAKDWLNCGHFSIVKSKTLGTVMIADEKGP
FT FKIKGIRCRKLFEDNESVEIE"
FT CDS complement(6659. .6946)
FT /codon_start=1
FT /db_xref="SPTREMBL:Q915A4"
FT /gene="Z"
FT /product="Z protein"
FT /protein_id="AAL16100.1"
FT /translation="MGLRYSKEVRESHGDEDVVGRVPMTLNLPQGLYGRFNCKSCWFVN
FT KGLIRCKDHYLCLGCLTKMHSRGHLCEICGHSLPTKMEFLESPSAPPYEP"
XX
SQ Sequence 6997 BP; 2187 A; 1273 C; 1553 G; 1984 T; 0 other;
AF427517 Length: 6997 September 18, 2002 10:52 Type: N Check: 2833 ..
1 cgcaccgagg atcctaggca tttcttgatc atggaggaat acgtttccga
51 atttaaagac atggtaagaa aatgggttcc agaatgggaa gagttatctg
101 agcagaagaa taacgtgctt gcacaggtta aagacagagc catcacaata
151 gaaggcctga aactcttatc catgttggta gaggtggact catgtaagaa
201 acattcctgc agacacaaca caagaatgac tgtcaatgct atccttagag
251 agttgaaagt cacatgtcct acactaccgg atgtcacacc agatggctac
301 tgcatggttg gagatgtcct catccttttg gaagtgtttg tgaggaccag
351 tcaagaagca tttgaaaaaa agtacaatca ggacttcttg aaattgatgc
401 agcttagttc tgatctcaag aggcagaata taactttagt acctgttatt
451 gatggtagat ccagctatta tgtggaatat attcctgatt gggttgtaga
501 gaggcttcgg tggttgctct tgaagcttat ggatggactg aggacatctg
551 gtgaagaagt tgaggaattg gagtacgaac gccttataag ttccctgtca
601 tctttggaaa atcagagtct tggtttagaa tcactacttg ccgtgaaaga
651 aagaggactt ccttacaagg tgaggttaga aaaggcattg gtgtcttgca
701 ttaataacaa attgacaaca gatcaatgca gaacaaagat catggaagtt
751 tttcagcaat ttaaaatgtt gcaactctct ggccaacatg ataggaaact
801 gcaagctaca gatagagaag atatgatctc caaactccag aaccatgaat
851 tcatccaatg ttctatcaaa gatatgccta aatcagaaat cagattatgt
901 gaattttgtt cagtacatat tttaggcata atagaccaac ttaggcaatc
951 tgaaatcagg cacccatcaa tcgaaagcaa agagtacttc agagtgcttt
1001 caatatgtaa caaaattaag tcccagaagg tttttaacac aagaaggaac
1051 actttattgg ttttggacct catcatgtac aacatcttgt gtgacttaga
1101 caaatcttct ccaggcactg tgttcagaga ggtgctctta atgcaagggc
1151 tgccgtctgt aaatgacagg ttaattaatg ttgatttctt aatagagcaa
1201 atcaccaaaa aatttatcaa aaatcccagt tggttggaga aagccaagaa
1251 aagactaagt ctggtgtgta gtgaatttcc tcttgatgac atcttgcctc
1301 ttctaaggga accagacatt gaatactact ttgatctaaa aacatcaata
1351 ttagatgagt ggggagccaa gccttatctt caatacaaga ctaagtcacg
1401 gtgtatgtgt ggaggtagac cagggagggg gcaacctgat tatgcaatta
1451 tgggtgaaag tgagtttgag gagttgttga aagcattgtc aagtctaagt
1501 ttgtcactca ttaacagcat gaagacagca gcagttccta agatgaaagt
1551 gaacaatgct gatgagtttt atggaaaggt ctactgtgat gaagttttct
1601 ttcaacgatt tggagaaggg ggctctctca cactattgta ccaaaagaca
1651 ggagagagat ccaggtgtta tgctgttgct ttcagatcca aaagtggagg
1701 tttatatgag acaaaagcat cattttactg tgatcctaag aggtttttct
1751 tgccgatctt tagtgcagat gtgattcaaa gaacttgtga agaaatgttg
1801 tcttggttag actttatgtc ccaacccttg ttggatttgg tatctgattt
1851 gctcagacgt ctcatccttt gcatactatg cactccttcc aagcgtattc
1901 aaatttactt acaaggcttt agatattata ttatggcttt tgtgaatgaa
1951 gttcatttta aggaattgtt tgagaaactg aaagttgtta tgctaacacc
2001 ttcagaatgg cagacagcaa tacttattga cgatctcata ctcctagtac
2051 tcaacaattc aagagaggaa gatatggcta aaatctttaa atttgttcta
2101 aatgtatcct acttgtgtca tttcataacc aaggagaccc ctgatagatt
2151 gactgatcaa atcaaatgtt ttgagaagtt cttagaacca aagttaaagt
2201 ttgactcagt cctggtcaac ccctccaaca gtatggagct ccctattgag
2251 gaggaagaga aaatggtgca tgacatggag agactactaa gtaaaaagct
2301 ggaatctaaa tgcgaaggga gaccagggat caacaaggat gtgcttagtg
2351 tttgtctatc attgttcaac aatggctcac tcgaagtgaa accctcatct
2401 tcttgcgacc ctatgacccc ctccttcaca agcacagctc tggacatgtc
2451 cagcaataaa agtgtggtgg ttcccaaact tgatgaagtt ggtgaagtta
2501 tcactgagta tgactactct tctattgtct ctgctgttgt tgtggaaata
2551 gttgaacatt tcaaaaccaa aggtaagtac aagctggacc caaaagagat
2601 aaacttcaaa attctaaaga ggttatcatc attgattcaa ataaagaagg
2651 agtcagtaga gcctgatgag actgaggagc tgttatcaga agatcagagt
2701 gattgtctta aagagattga gactagagtt tcgaaagtgt tatctaaggt
2751 tgacaccaat gtcaaacccg acttgaagac tccgtgtccg ttggagaggt
2801 tgtgccctaa atccacaatg gtaatcatca aaagggaaac ttcgcttcat
2851 gatgtgaaag actttgacta caacttattt tcagctgaag tgtatgaaga
2901 tcttgtgaat ttgatttatg aggatgtcac tgctagatca atgtactttg
2951 cagacagact aatgaatccg tgtcctttgg agtacttgat aaagaacctc
3001 acactgaagg cttataaaga ggctgattat tttgagtgct tcaagtacat
3051 ccttattgca agcgattttg ataatcgagt tggaagatat gatcacaaaa
3101 gtagaagcag acttggattc acagatgcag cactacaaat aagggagaca
3151 tcacgcatta gttcaagaga gagcaactct gaatcgatag ctaaaagatt
3201 agatcagagt ttctttacaa actcatcttt acgaaacctt tgtttctatt
3251 cagatgaatc cccaacagag aggtctagtg tgtctactaa tgtggggaga
3301 ttgaaattcg gactttctta caaggagcaa gtaggtggta acagagagct
3351 ttatgtcggt gacttgaaca ccaagctcac aactagactt attgaggatt
3401 actctgaatc cctcatgcag aacatgaggt acacctgcct gaacaatgaa
3451 aaggagtttg agagagcatt attagatatg aaatcagttg tcagacaaag
3501 cggccttgca gtgtcaatgg accactcaaa atgggggcca cacatgtcac
3551 cagtcatctt tgccgcatta ttgaagggcc ttgagttcaa tctcaaagat
3601 ggatcagaag ttcctaatgc tgcgattgtc aacatattac tatggcatat
3651 ccacaagatg gtagaagtgc ctttcaatgt tgtagaagca tacatgaagg
3701 gcttcttgaa aagagggttg ggtatgatgg acaaaggagg gtgcacaatt
3751 gcagaagaat ttatgtttgg atattttgaa aagggtaagg tgccatcaca
3801 catttcttca gtcctggata tgggtcaagg cattttgcac aatacctctg
3851 atctgtatgg cctaatcact gagcaattca ttaactatgc attggagctc
3901 tgctatggtg tgcggttcat ctcatatact tcaagtgatg atgaaatcat
3951 gctgtcctta aatgaggctt tcaaatttaa agatagagat gagctaaatg
4001 ttgacctggt gttagattgt atggagtttc actacttttt atcagacaaa
4051 ctcaacaaat ttgtgagtcc taaaacagtt gtggggacct ttgcaagtga
4101 atttaaatcg agattcttta tttggtctca agaagtcccc ctccttacaa
4151 agtttgttgc tgcggcctta cacaatataa aggctaaagc acctaaccag
4201 caagcagata caattgacac aatattagac caatgtgtcg ccaatggggt
4251 gtcaatagag gttgtggggg ccattgcaaa gcgaactttc agcatgatta
4301 tctacagtgg atttccaaat gatccattct tgtgcctaga agagatggat
4351 gtgctagatt gggtcaacgg gtcgagaggg tacagactcc aacgatcaat
4401 tgaatcattg tttcctgatg atttgctact ttcaataatt aggaaggcat
4451 gcaggaagat attttacaaa atacaatctg gagctctgga agaaagttat
4501 attgtaacaa ctcttcagca gtcaccggat gactgtttga aacagttgtt
4551 ggagacttgt gatgttgaga ctgaggctat tgaagatgct ctagacatca
4601 gatggttgaa tctaagggtt catggtgatc tgaggttggt gcttcggacc
4651 aagttgatga gcaccacaag aactgtgcaa cgggaagaaa tacctagtct
4701 tgttaaatcc gtacaatcta aattgtcaaa aaattacgtt agaggagcca
4751 agaaaatttt agctgatgct atcaataaat cagctttcca aagtagtgtg
4801 gcatcaggat tcataggagt ctgtaaaagc atgggttcaa gatgcgttag
4851 agcgaaaagg gggattcaaa tacatcagga tcacacaggt aagatcacct
4901 tacatcgtga ttgtcaccac tgtaatcagc gcaagggtgt ttactgtaaa
4951 gcagcactta gtgaagtgag tgagtactcc agacctttaa tctgggatta
5001 ttttgcactt gtgctgacca atgcttgtga gctaggcaat tgggtgtttc
5051 aaaaggctga agtgccaaag atagtcactc acttaaataa ccctaatcac
5101 ttctggccaa taaaaccaag tacacattct gaactagaag acaaggtggg
5151 catcaaccac atactgtact caatcaggag aaacttcccc acactgtttg
5201 atgaacacat atcccccttc ttgtctgact taaacatgtt gagactgtca
5251 tgggttcaga agataaaatt tttagacctt tgtgttgcaa ttgacataac
5301 atcagagtgt cttggtattg ttagtcacat tataaaacat cgtagagaag
5351 agttgtatat tgtaaagcaa aatgagcttg caatgtctca cagtagggag
5401 tctcacccac tagagaggga ttcaaccttg agccagagag tatgtgcaaa
5451 ctttttaata caaatcttgt tcgagtctat gttggtgcct gtgatcatgt
5501 caacgtctca atttaaaaag tacttttggt tcggcgaagt tgagttatta
5551 ccaaacaatg cacaacatga tttgaaacaa ttaacccaat ttgtatgtga
5601 ctgcaaaaag aacaacacct ctagaacaat gaatctagat gacttggacg
5651 ttggctttgt tagcagcaac ctgattttgt cctgtgccaa tttgaatatt
5701 agtgtattca ttaatgaact tgactggatg aatagagatg actatgagaa
5751 tatggagcaa cacatcttag catcaccctc ggaaatcatc cctattgagc
5801 tcaacttgac attctcgcat aaaagggtga gtcacaaatt tagatatgag
5851 aggtccacca attacatatt aaaactaaga tttcttattg aaaggggttc
5901 attgctggat tcattagact gtgatggcta tctactgttg aagcctcatt
5951 ctgtcgagta ctatgttctc aatcctctga aatcacataa gcttgatggt
6001 gtgtcacttt tagttttaaa tcctctcatc aacgggaaag atgtgttaga
6051 ctttaatgat ttgttagaag atcaagatgt tcgtttcaag tcaaggtcag
6101 ctgtattcca gaaagtaaaa ctagatatga aagactactt caaggacctg
6151 aagaacaagt tttcttataa gttgattggt cctgatgttg ggatgcaacc
6201 tctgattttg gaaaacgggt tgatcaagaa ggaacagagt gtttctagat
6251 tggaagtgaa tttggactca aaggtggtca tcattcgact ggaagcactg
6301 gaacctgaga aaaggtcaaa gttcattgct aacctcttcc aatacctctc
6351 aagtgcacag tctcacaata aggggataat catgactgag caagacctaa
6401 ggtacatgat cgagaacttt cctgaagtct tcgaacatat gttgcatgat
6451 gctaaagact ggttgaactg tggtcacttt agcatagtaa aaagcaaaac
6501 actagggacc gtcatgattg cagatgaaaa aggacccttc aagatcaaag
6551 gaatcaggtg tcggaaattg ttcgaagaca atgagtcagt ggagatcgag
6601 tgagcaagca cccatggggg cccccggagg ggggccccca ggccccaggg
6651 gccctggttt atggctcata gggaggtgca gacggactct ccagaaactc
6701 catcttggtt ggaagtgagt gtccgcatat ctcacagaga tggcctctgg
6751 agtgcatctt ggttaagcat ccaagacaca gatagtggtc tttgcacctg
6801 ataagaccct tgttgacaaa ccaacaggac ttgcaattaa atctgccata
6851 cagaccctgt ggtaggttga gggtcatagg gacccttccc accacatcct
6901 cgtcgccatg actctccctg acttctttgc tgtatctaag tcccatccta
6951 aatcccaacc aagatttgag ctgggtttaa aattggacaa atttgaa