Sequence of DPV Potato leafroll virus
Potato leafroll virus strain OP, complete genome.
ACC No: AF453389
Dated: 2006-12-08 | Length: 5865 | CRC: -108350006
ID AF453389; SV 1; linear; genomic RNA; STD; VRL; 5865 BP.
XX
AC AF453389;
XX
DT 14-FEB-2002 (Rel. 70, Created)
DT 08-DEC-2006 (Rel. 90, Last updated, Version 5)
XX
DE Potato leafroll virus strain OP, complete genome.
XX
KW .
XX
OS Potato leafroll virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5865
RX PUBMED; 12075102.
RA Guyader S., Ducray D.G.;
RT "Sequence analysis of Potato leafroll virus isolates reveals genetic
RT stability, major evolutionary events and differential selection pressure
RT between overlapping reading frame products";
RL J. Gen. Virol. 83(Pt 7):1799-1807(2002).
XX
RN [2]
RP 1-5865
RA Guyader S., Giblot Ducray D.;
RT ;
RL Submitted (28-NOV-2001) to the EMBL/GenBank/DDBJ databases.
RL UMR BiO3P, Institut National de la Recherche Agronomique, Domaine de la
RL Motte, BP 35327, Le Rheu Cedex 35653, France
XX
CC Genome sequence lacks part of non-coding region.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5865
FT /organism="Potato leafroll virus"
FT /strain="OP"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /db_xref="taxon:12045"
FT 5'UTR <1. .53
FT CDS 54. .797
FT /codon_start=1
FT /product="P0"
FT /db_xref="InterPro:IPR006755"
FT /db_xref="UniProtKB/TrEMBL:Q8QYR7"
FT /protein_id="AAL77921.1"
FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH
FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPTI
FT VIKLDDPTTAAAYRSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELRERSIP
FT QSGLRDLMGNYQHLVRSLLDACEVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA
FT LTGFPVYVPSEDYLEGSFLQKELQE"
FT CDS 187. .2106
FT /codon_start=1
FT /product="polyprotein"
FT /note="P1; proteinase; VPG"
FT /db_xref="InterPro:IPR000382"
FT /db_xref="InterPro:IPR009003"
FT /db_xref="UniProtKB/TrEMBL:Q8QYR6"
FT /protein_id="AAL77922.1"
FT /translation="MNRFTAYAALFFMFSLCSTAKEAGFQHPAFNFRGTSTMSALSGDY
FT SAAPTPLYKSWALPSSLNLTTQPPPPLTDRSYYELVQALISKMRLDCQTVGDMTWRHLS
FT EMLFASWNSVKEVSLKAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC
FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS
FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK
FT SARNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH
FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMPVIPSIPGITSPNYGFE
FT STAVKGRVFSDEAVKELEREASEAVKKLAKFKSLTGKNWADDYDSDEDYGLEREAATNA
FT PAEKTAQTNSAEKTAPSTSAEKTALTNKPLNGQAAPSAKTNGNSDIPDVATSAPPMDKM
FT VEQIITAMVGRINLTEIEEKIVSRVSQRALLKPKQKKRGRRGGKNKLNSSPPTSTQSTS
FT GAPRKEAASQASGSADTSRATTTPAPEAKPSGDKNSAKFIPSWRRKQQDSAGQKPDLKL
FT NSKA"
FT CDS <1524. .3374
FT /codon_start=1
FT /product="putative RNA polymerase"
FT /note="P2; translated by ribosomal frameshift"
FT /db_xref="GOA:Q8QYR5"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:Q8QYR5"
FT /protein_id="AAL77923.1"
FT /translation="GLRSGERGCNKCARRENCSNKLSREDCSINFSRENCSNKQAFKWA
FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQPHGDRGEDSEQGVSESPAEA
FT QTKEARKAWREEQAKQFTSYFNAIYKWGAQEGGCLPGFRKCGHIPRYYHPRTRGETQWG
FT QKLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK
FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV
FT EDHKLLPVLTQLTFDRLQKMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG
FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS
FT GAPSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFDNTQLTKRLRAAWL
FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL
FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP
FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH"
FT CDS 3572. .5725
FT /codon_start=1
FT /transl_except=(pos:4196. .4198,aa:OTHER)
FT /product="readthrough protein"
FT /note="P5; translated by amber stop codon suppression"
FT /db_xref="GOA:Q8QYR3"
FT /db_xref="InterPro:IPR000893"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q8QYR3"
FT /protein_id="AAL77926.1"
FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQSR
FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL
FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITRGGAKTYQA
FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP
FT TPTPTPQKPKRFIAYVGIPMLTIQARENDDQIILGSLGSQRMEYIEDENQNYTNVSSEY
FT YSQSSMQAVPMYYFNVPRGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN
FT VGEADGVKISKLRNDNTYRQGHPDLEINSCHFREGQLLERDATISFHVEAPTDGRFFLV
FT GPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRPPREGHTYMAS
FT PRKPEGKPVGNKPRDETPIQTQERQPDQTPSDDVSDAGSVNSGGSTESLRLEFGVNSDS
FT TYDATVDSTDWPRIPPPRHPPEPRVSGNSRTVTDFSPKADLLENWDAEHFDPGYSKEDV
FT AAATIIAHGSIQDGRSMLEKREGNVKNKTSSWKLPLPKAESPAIAKLRSIRKSQPLEGG
FT TLKKDTTDGVSSIGSGSLTGGTLKRKATIEEHLLQTLTTEQRLWYENLKKTNPLAATQW
FT LFKYQPPPQVDRNLAEKPFQGRK"
FT CDS 3572. .4198
FT /codon_start=1
FT /product="major capsid protein"
FT /note="P3"
FT /db_xref="GOA:Q8QYR4"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q8QYR4"
FT /protein_id="AAL77924.1"
FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQSR
FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL
FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITRGGAKTYQA
FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK"
FT CDS 3597. .4067
FT /codon_start=1
FT /product="putative movement protein"
FT /note="P4"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:Q8QYR2"
FT /protein_id="AAL77925.1"
FT /translation="MSMVVYNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDAEEEA
FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS
FT QASYFSSSARPLPPPPVPSLMSWTPIAKYHPSSPTSTSSKLRGAAPKLIKRG"
FT CDS 5130. .5318
FT /codon_start=1
FT /product="P6"
FT /db_xref="UniProtKB/TrEMBL:Q8QYR1"
FT /protein_id="AAL77927.1"
FT /translation="MLQSIVQTGPEFLHQGTHLNLEFPAIQELLLTFLRKPIYWRIGMP
FT NTSTLVIPKKMSLLLLL"
FT CDS 5348. .5725
FT /codon_start=1
FT /product="P7"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q8QYR0"
FT /protein_id="AAL77928.1"
FT /translation="MLEKREGNVKNKTSSWKLPLPKAESPAIAKLRSIRKSQPLEGGTL
FT KKDTTDGVSSIGSGSLTGGTLKRKATIEEHLLQTLTTEQRLWYENLKKTNPLAATQWLF
FT KYQPPPQVDRNLAEKPFQGRK"
XX
SQ Sequence 5865 BP; 1621 A; 1484 C; 1431 G; 1329 T; 0 other;
af453389 Length: 5865 08-DEC-2006 Type: N Check: 5807 ..
1 gaaattgcag ctttagcgca taaactctac actcattgca aacgttatag
51 catatgattg tattgaccca gtctggaacc ttgctttttg accaaagatt
101 taaactctca aagtttctct tcgttgtcat tgcaacaggc tttcctcttc
151 tcctgcagca agcgagctta atttacggct acaatcatga acagatttac
201 cgcatatgcc gctcttttct ttatgttctc cctttgctca actgcaaaag
251 aggcaggatt tcaacatccg gccttcaact tccgaggcac ctccactatg
301 agtgccttga gtggggatta ctctgcggca cccaccccgc tatacaaatc
351 gtgggcccta ccatcgtcat taaacttgac gacccaacca ccgccgccgc
401 ttacagatcg gagctactac gagttagttc aagctcttat atccaaaatg
451 cggctggatt gtcaaacggt tggggacatg acatggaggc atttgtcaga
501 aatgctattt gcctcctgga actccgtgaa agaagtatcc ctcaaagcgg
551 cctccgtgac cttatgggca attatcagca tttggttcgg tctttattgg
601 acgcttgcga ggttgatcac tttgttcctc tggactttca gcatagaagc
651 cttatgctta attttgctcg gttgtataac cagcttgatc tacaagggcg
701 cgctaagtct ttcagagcac ttaccggttt tcctgtttat gtcccctctg
751 aagattattt ggagggcagc tttctccaaa aggaattaca agaatgagag
801 ggctgtggaa ggatataaag ggttttcggt cccacagaaa ccgccaaagt
851 ctgccgtaat tgaactacaa catgaaaacg gcagccatct cgggtacgcg
901 aactgtattc gcttgtacag tggagagaac gccttggtga cagctgaaca
951 ctgtctagaa ggcgctttcg caacgtcgtt gaaaactgga aacaggattc
1001 cgatgtcgac tttctttccc attttcaaaa gtgcccgtaa tgatatctcc
1051 atactagtag gtccacctaa ctgggaaggt ctactatcag ttaaaggagc
1101 tcatttcatt acagctgaca aaatcggcaa aggtcctgcc tctttctaca
1151 ctcttgagaa aggggagtgg atgtgccata gtgccaccat agatggagcc
1201 catcaccagt tcgtgtctgt tttatgcaac actggacccg gatattccgg
1251 aacagggttt tggtcttcaa agaatctgct tggtgtgctt aaaggcttcc
1301 cactggaaga ggagtgtaac tacaatgtta tgcctgttat accctcgatc
1351 ccaggaatca cttccccaaa ttatgggttt gagtcgaccg ccgtaaaagg
1401 ccgcgtcttc tcggatgaag ctgtgaaaga gctagagcgg gaagcatccg
1451 aagccgtcaa gaagcttgcc aaatttaaat cacttaccgg caagaactgg
1501 gctgatgatt atgactccga tgaggattac ggtctggaga gagaggctgc
1551 aacaaatgcg cccgcagaga aaactgctca aacaaactca gcagagaaga
1601 ctgctccatc aacttcagca gagaaaactg ctctaacaaa caagccttta
1651 aatgggcaag cggcaccgtc cgccaaaaca aacggcaact ccgacatccc
1701 cgacgtcgct acaagcgcac caccaatgga caaaatggtc gaacagatca
1751 tcacagctat ggtggggaga atcaacctca cggagataga ggagaagata
1801 gtgagcaggg tgtctcagag agccctgctg aagcccaaac aaaagaagcg
1851 cggaaggcgt ggagggaaga acaagctaaa cagttcacct cctacttcaa
1901 cgcaatctac aagtggggcg cccaggaagg aggctgcctc ccaggcttca
1951 ggaagtgcgg acacatcccg cgctactacc acccccgcac cagaggcgaa
2001 acccagtggg gacaaaaact ctgccaagtt catcccgagc tggcggagaa
2051 aacagcagga ttcggctggc caaaagccgg atctgaagct gaactccaaa
2101 gcctgaatct acaggctgcc aggtggctcc aacgcgcgga gtcggccact
2151 atccctggcg cagaagcaag aaagcgcgtg attgagaaaa cagtggaggc
2201 atacagaaat tgcgtaacta acgccccgct gtgctccctt aaatccaaac
2251 tggattgggc tggctttcaa caagatatcc gtgaagcagt ccagtccctt
2301 gagctagacg ctggtgtagg cattccctat atcgcgtatg gcctccccac
2351 acaccgagga tgggttgagg accataagct tctcccagtg ctcactcagc
2401 tgacctttga ccgcctacag aagatgtcag aggccagctt tgaggatatg
2451 agcgcagaag agctggttca agaagggctc tgtgatccta tcagactatt
2501 tgtcaaagga gagccccaca aacagagcaa actcgatgaa ggccgctacc
2551 gcctcattat gtctgtttcc ttggtggatc aactggtagc ccgggttctg
2601 ttccaaaatc agaacaaaag ggaaatttcc ctgtggaggt ctgtgccttc
2651 caaacccggt tttggccttt caactgacac tcaaactgct gaattcttgg
2701 agtgtcttca aaaggtgtct ggagcgccat ctgtggaaga attgtgtgca
2751 aatcacaagg agtacacgcg cccaaccgac tgttccggtt tcgactggtc
2801 agtcgcgtat tggatgctgg aggatgatat ggaggtgaga aatcgcctga
2851 catttgataa cacccagctc accaagcgcc ttcgggctgc ctggttgaag
2901 tgcataggaa actctgtcct gtgcctgtcc gatggcactt tacttgccca
2951 aactgttccc ggtgtgcaaa agagcggaag ttacaataca agttcttcca
3001 actctagaat ccgggttatg gctgcctatc actgtggcgc cgactgggca
3051 atggccatgg gggacgatgc tctcgaagcc cccaactccg acctagagga
3101 gtataaaaca ctaggtttca aagtcgaggt aggtcgagaa ctcgaattct
3151 gttcacatat tttcagaaat ccgaccctcg ccgttccggt caacaccaac
3201 aaaatgcttt acaagttgat ccatggttat aatccggaat gtggcaatcc
3251 agaagtgatt caaaactatc tggctgcagt attctctgtg ctgcaggaac
3301 tccgacacga tcgtgagctc gttgccaagc tccaccagtg gttggttccg
3351 agtgccacca caaaagaaca ctgaaggagc tcactataac tagccaagca
3401 tacgcgagtt gcaagcattg gaagttcaag cctcgttaca tcaaccggat
3451 aaaattgatt ataaattttt agcgggattt gctttaggat tcttatccgc
3501 gatcccattc tcagtagccg gtttatattt tgtttaccta aagatttcct
3551 cccacgtgcg atcaattgtt aatgagtacg gtcgtggtta aaggaaatgt
3601 caatggtggt gtacaacaac caagaaggcg aagaaggcaa tcccttcgca
3651 ggcgcgctaa cagagttcag ccagtggtta tggtcacggc ccctgggcaa
3701 tccaggcgcc gaagacgcag aagaggaggc aatcgccgct caagaagaac
3751 tggagttccc cgaggacgag gctcaagcga gacattcgtg tttacaaagg
3801 acaacctcat gggcaactcc caaggaagtt tcaccttcgg gccgagtcta
3851 tcagactgtc cggcattcaa ggatggaata ctcaaggcct accatgagta
3901 taagatcaca agcatcttac ttcagttcgt cagcgaggcc tcttccacct
3951 cctccggttc catcgcttat gagttggacc cccattgcaa agtatcatcc
4001 ctccagtcct acgtcaacaa gttccaaatt acgaggggcg gcgccaaaac
4051 ttatcaagcg cggatgataa acggggtaga atggcacgac tcttctgagg
4101 atcagtgccg gatactgtgg aagggaaatg gaaaatcttc agataccgca
4151 ggatccttca gagtcaccat cagggtggct ttgcaaaacc ccaaataggt
4201 agactccgga tcagagcctg gtccgagccc acaaccaaca cccactccaa
4251 ctccccagaa gcccaagcgt tttattgctt acgttggtat acctatgcta
4301 accattcagg ccagggagaa cgacgaccaa atcatattgg gttccttagg
4351 gagccaaagg atggaatata tagaggacga gaaccagaac tatacaaatg
4401 ttagttctga gtattactct caatcgagca tgcaagccgt ccctatgtat
4451 tacttcaatg tcccgagagg acaatggtca gtcgacatca gctgcgaagg
4501 gtatcaaccc actagcagca cctcggatcc aaaccggggt aggagtgacg
4551 ggatgatcgc gtattcaaac gcggattccg attattggaa tgttggtgaa
4601 gcggatggtg tcaaaatttc gaagctacgc aacgataaca cctaccgcca
4651 aggtcaccca gatctcgaaa ttaactcgtg tcattttcgc gagggccaac
4701 tccttgaacg ggacgctaca attagctttc acgttgaagc gcctactgat
4751 gggcgattct ttctcgttgg tcccgctatc cagaaaaccg caaagtataa
4801 ctatactatc tcatacggtg actggacgga ccgagacatg gaactggggc
4851 tgatcaccgt ggtgcttgat gaacatttag aaggcactgg ttcggctaac
4901 agagtgcggc ggcccccacg ggagggccac acctatatgg cctcgccgcg
4951 caaaccggaa ggaaaaccgg ttggaaataa accaagggac gaaaccccga
5001 tacaaacgca ggaaagacaa cctgatcaaa ctccgtctga cgacgtatcc
5051 gatgctggtt cggtaaacag cggcggttca actgagtcgc tgcgattgga
5101 gttcggggta aactcagata gtacctacga tgctacagtc gatagtacag
5151 actggcccag aattcctcca ccaaggcacc cacctgaacc tagagtttcc
5201 ggcaattcaa gaactgttac tgacttttct ccgaaagccg atctattgga
5251 gaattgggat gccgaacact tcgaccctgg ttattccaaa gaagatgtcg
5301 ctgctgctac tattatagcg cacggcagta ttcaagatgg gcgaagtatg
5351 ttggagaaga gagagggaaa tgtcaagaac aaaacctcct cctggaagct
5401 cccgttacct aaagcggaga gcccagccat agccaaattg cgctcgattc
5451 gcaaatccca acccctcgag ggagggaccc ttaagaaaga caccactgat
5501 ggtgtctcat ctattggcag tggttctcta acaggtggca cgcttaagag
5551 gaaggcaact atcgaagagc atttactgca gaccttaaca actgaacaaa
5601 ggctgtggta cgagaatttg aagaaaacta accctctagc tgctacccaa
5651 tggctgttta aataccagcc acctccccaa gtagatagaa acctagctga
5701 aaagccattc caagggagga aatgagtcga ctcacgactt aaaactgagt
5751 gtccgccgga catcaagcgg aacgaaagcc gaaaggtgat taggctctca
5801 acgcctgcta gagaccgtcg aaagacgcga ctgtgtagcc aggatcctct
5851 tacagggttg tgtag