Sequence of DPV Potato leafroll virus
Potato leafroll virus strain Noir, complete genome.
ACC No: AF453390
Dated: 2006-12-08 | Length: 5838 | CRC: 1019317119
ID AF453390; SV 1; linear; genomic RNA; STD; VRL; 5838 BP.
XX
AC AF453390;
XX
DT 14-FEB-2002 (Rel. 70, Created)
DT 08-DEC-2006 (Rel. 90, Last updated, Version 5)
XX
DE Potato leafroll virus strain Noir, complete genome.
XX
KW .
XX
OS Potato leafroll virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5838
RX PUBMED; 12075102.
RA Guyader S., Ducray D.G.;
RT "Sequence analysis of Potato leafroll virus isolates reveals genetic
RT stability, major evolutionary events and differential selection pressure
RT between overlapping reading frame products";
RL J. Gen. Virol. 83(Pt 7):1799-1807(2002).
XX
RN [2]
RP 1-5838
RA Guyader S., Giblot Ducray D.;
RT ;
RL Submitted (28-NOV-2001) to the EMBL/GenBank/DDBJ databases.
RL UMR BiO3P, Institut National de la Recherche Agronomique, Domaine de la
RL Motte, BP 35327, Le Rheu Cedex 35653, France
XX
CC Genome sequence lacks part of non-coding region.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5838
FT /organism="Potato leafroll virus"
FT /strain="Noir"
FT /mol_type="genomic RNA"
FT /country="France"
FT /db_xref="taxon:12045"
FT 5'UTR <1. .53
FT CDS 54. .797
FT /codon_start=1
FT /product="P0"
FT /db_xref="InterPro:IPR006755"
FT /db_xref="UniProtKB/TrEMBL:Q8QYQ9"
FT /protein_id="AAL77929.1"
FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH
FT EQIYRICRSLLYVLPLLNCKGGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGSTI
FT VIKLDDPTTAAAYRSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELRERSIP
FT QSGLRDLMGNYQHLVRSLLDACEVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA
FT LTGFPVYVPSEDYLEGSFLQKELQE"
FT CDS 187. .2079
FT /codon_start=1
FT /product="polyprotein"
FT /note="P1; proteinase; VPG; contains a natural deletion
FT compared to other potato leafroll viruses"
FT /db_xref="InterPro:IPR000382"
FT /db_xref="InterPro:IPR009003"
FT /db_xref="UniProtKB/TrEMBL:Q8QYQ8"
FT /protein_id="AAL77930.1"
FT /translation="MNRFTAYAALFFMFSLCSTAKEAGFQHPAFNFRGTSTMSALSGDY
FT SAAPTPLYKSWALPSSLNLTTQPPPLLTDRSYYELVQALISKMRLDCQTVGDMTWRRLS
FT EMLFASWNSVKEVSLKAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC
FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNEKAVEGYKGFSVPQKPPKS
FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK
FT SARNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH
FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE
FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLTGKNWADDYDSDEDYGLEREAATNA
FT PAEKTAQTNSAEKTAPTNKPLNGQAAPSAKTNGNFDIPDAATSAPPMDKMVEQIITAMV
FT GRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKNKLNSSPPTSTQSTSGAPKKEAAP
FT QASGSVGTSRATTTPAPEAKPSGGTNSAKFIPSWRRKQQDSAGQKPDLKLNSKA"
FT CDS <1524. .3347
FT /codon_start=1
FT /product="putative RNA polymerase"
FT /note="P2; translated by ribosomal frameshift"
FT /db_xref="GOA:Q8QYQ7"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:Q8QYQ7"
FT /protein_id="AAL77931.1"
FT /translation="GLRFGERGCNKCARRENCSNKLSRENCSNKQAFKWASGTVRQNKR
FT QLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAEAQTKEARKAW
FT REEQAKQFTSYFDAIYKWGAQEGGCPPGFRKCGHIPRYYHPRTRGETQWGHKLCQVHPE
FT LAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEKTVEAYRNCV
FT TNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWVEDHKLLPVL
FT TQLTFDRLQGMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEGRYRLIMSVS
FT LVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVSGAPSVEELC
FT ANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWLKCIGNSVLC
FT LSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDALEAPNSDLEE
FT YKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNPEVIQNYLAA
FT VFSVLQELRHDRELVAKLHQWLVPSATTKEH"
FT CDS 3545. .5698
FT /codon_start=1
FT /transl_except=(pos:4169. .4171,aa:OTHER)
FT /product="readthrough protein"
FT /note="P5; translated by amber stop codon suppression"
FT /db_xref="GOA:Q8QYQ6"
FT /db_xref="InterPro:IPR000893"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q8QYQ6"
FT /protein_id="AAL77934.1"
FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR
FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL
FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA
FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP
FT TPTPTPQKHERFIAYVGIPMLTIQARENDDQITLGSLGNQRMKYIEDENQSYTNVSSEY
FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN
FT VGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV
FT GPAIQKTAKYNYTISYGDWMDRDMELGLITVVLDEHLEGTGSANRVRRPPREGHTYMAS
FT PREPEGKPVGNKPRDETPIQTRERQLDQTPSDDVSDAGSVNNGGSAESLQLEFGVNSDS
FT TYDATVDSTDWPRIPPPRHPPEPRVSGNSRTVTDFSPKADLLENWDAEHFDPGYSKEDV
FT AAATIIAHGSIQDGRSMLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQPLEGG
FT ILKKDATDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPLAATQW
FT LFEYQPPPQVDRSIAEKPFQGRK"
FT CDS 3545. .4171
FT /codon_start=1
FT /product="major capsid protein"
FT /note="P3"
FT /db_xref="GOA:Q84838"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q84838"
FT /protein_id="AAL77932.1"
FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR
FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL
FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA
FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK"
FT CDS 3570. .4040
FT /codon_start=1
FT /product="putative movement protein"
FT /note="P4"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:Q8QYQ5"
FT /protein_id="AAL77933.1"
FT /translation="MSMVVYNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDVEEEA
FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS
FT QASYFSSSARPLPPPPAPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG"
FT CDS 5103. .5291
FT /codon_start=1
FT /product="P6"
FT /db_xref="UniProtKB/TrEMBL:Q8QYQ4"
FT /protein_id="AAL77935.1"
FT /translation="MLQSIVQTGPEFLHQGTHLNLEFPAIQELLLTFLRKPIYWRIGMP
FT STSTLVIPKKMSLLLLL"
FT CDS 5321. .5698
FT /codon_start=1
FT /product="P7"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q8QYQ3"
FT /protein_id="AAL77936.1"
FT /translation="MLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQPLEGGIL
FT KKDATDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPLAATQWLF
FT EYQPPPQVDRSIAEKPFQGRK"
FT 3'UTR 5699. .>5838
XX
SQ Sequence 5838 BP; 1617 A; 1473 C; 1426 G; 1322 T; 0 other;
af453390 Length: 5838 08-DEC-2006 Type: N Check: 4050 ..
1 gaaattgcag ctttagcgca taaactctac actcattgca aacgttatag
51 catatgattg tattgaccca gtctggaacc ttgctttttg accaaagatt
101 taaactctca aagtttctct tcgttgtcat tgcaacaggc tttcctcttc
151 tcctgcagca agcgagctta atttacggct acaatcatga acagatttac
201 cgcatatgcc gctctcttct ttatgttctc cctttgctca actgcaaagg
251 aggcaggatt tcaacatccg gccttcaact tccgaggcac ctccactatg
301 agtgccttga gtggggatta ctctgcggca cccaccccgc tatacaaatc
351 gtgggctcta ccatcgtcat taaacttgac gacccaacca ccgccgctgc
401 ttacagatcg gagctactac gagttagttc aagctcttat atccaaaatg
451 cggctggatt gtcaaacggt tggggacatg acatggaggc gtttgtcaga
501 aatgctattt gcctcctgga actccgtgaa agaagtatcc ctcaaagcgg
551 cctccgtgac cttatgggca attatcagca tttggttcgg tctctattgg
601 acgcttgcga ggttgatcac tttgttcctc tggactttca gcatagaagc
651 cttatgctta attttgctcg gttgtataac cagcttgatc tacaagggcg
701 cgctaagtct ttcagagcac ttaccggttt tcctgtttat gtcccctctg
751 aagattattt ggagggcagc tttctccaaa aggaattaca agaatgagaa
801 ggctgtggaa ggatacaaag ggttttcggt cccacagaaa ccgccaaagt
851 ctgccgtaat tgaactacaa cacgaaaacg gcagccatct cgggtacgcg
901 aactgcattc gcttgtacag tggagagaac gccttggtga cagctgaaca
951 ctgtctagaa ggcgctttcg caacgtcgtt gaaaactgga aacaggattc
1001 cgatgtcgac tttctttccc atcttcaaaa gtgcccgtaa tgatatctcc
1051 atactagtag gtccacccaa ctgggaaggt ctactatcag tcaaaggagc
1101 tcatttcatt acagctgaca aaatcggcaa aggtcctgcc tctttctaca
1151 ctcttgagaa aggagagtgg atgtgccata gtgccaccat agatggagcc
1201 catcaccagt tcgtgtctgt tttatgcaac actggacccg gatattccgg
1251 aacagggttt tggtcttcaa agaatctgct tggtgtgctt aaaggcttcc
1301 cactggaaga ggagtgtaac tacaatgtta tgtctgttat accctcgatc
1351 ccaggaatca cttccccaaa ttatgtgttt gagtcgaccg ccgtaaaagg
1401 ccgtgtcttc tcggatgaag ctgtgaaaga gctagagcgg gaagcatccg
1451 aagccgtcaa gaagcttgcc agatttaaat cacttaccgg caagaactgg
1501 gctgatgatt atgactccga tgaggattac ggtttggaga gagaggctgc
1551 aacaaatgcg cccgcagaga aaactgctca aacaaactca gcagagaaaa
1601 ctgctccaac aaacaagcct ttaaatgggc aagcggcacc gtccgccaaa
1651 acaaacggca acttcgacat ccccgacgcc gctacaagcg caccaccaat
1701 ggacaaaatg gtcgaacaga tcatcacagc tatggtgggg agaatcaatc
1751 tctcggagat agaggagaag atagtgagca gggtgtctca gaaagccctg
1801 cagaagccca aacaaaagaa gcgcggaagg cgtggaggga agaacaagct
1851 aaacagttca cctcctactt cgacgcaatc tacaagtggg gcgcccaaga
1901 aggaggctgc cccccaggct tcaggaagtg tgggcacatc ccgcgctact
1951 accacccccg caccagaggc gaaacccagt gggggcacaa actctgccaa
2001 gttcatcccg agctggcgga gaaaacagca ggattcggct ggccaaaagc
2051 cggatctgaa gctgaactcc aaagcctgaa tctacaggct gccaggtggc
2101 tccaacgcgc ggagtcggcc actatccctg gcgcagaagc aagaaagcgc
2151 gtgattgaga aaacagtgga ggcatacaga aattgtgtaa ctaacgcccc
2201 actgtgctcc cttaaatcca aactggattg ggctggcttt caacaagata
2251 tccgtgaagc agtccagtcc cttgagctag acgctggtgt aggcattccc
2301 tatatcgcgt atggcctccc cacacaccga ggatgggttg aggaccataa
2351 gcttctccca gtgctcactc agctgacctt tgaccgacta caggggatgt
2401 cagaggccag ctttgaggat atgagcgcag aagagctggt tcaagaaggg
2451 ctttgtgatc ctatcagact atttgtcaaa ggagagcctc acaaacagag
2501 caaactcgat gaaggccgct accgcctcat catgtctgtt tccttggtgg
2551 atcaactggt agcccgggtt ctgttccaaa atcagaacaa aagggaaatt
2601 tccctgtgga ggtctgtgcc ttccaaaccc ggttttggcc tttcaactga
2651 cactcaaact gctgaattct tggagtgtct tcaaaaagtg tctggagcgc
2701 catctgtgga agaattgtgt gcaaatcaca aggagtacac gcgcccaacc
2751 gactgttccg gtttcgactg gtcagtcgcg tattggatgc tggaggatga
2801 tatggaggtg agaaatcgcc tgacatttaa taacacccag ctcaccaagc
2851 gccttcgagc tgcctggttg aagtgcatag gaaactccgt cctgtgcctg
2901 tccgatggca ctttacttgc ccaaactgtt cccggtgtgc aaaagagtgg
2951 aagttacaat acaagttcct ccaactctag aatccgggtt atggctgcct
3001 atcactgtgg cgccgactgg gcaatggcca tgggggacga tgctctcgaa
3051 gcccccaact ccgacctgga ggagtataaa acactaggtt tcaaagtcga
3101 ggtaggtcga gaactcgaat tctgttcaca catcttcaga aatccgaccc
3151 tcgccgttcc ggtcaacacc aacaaaatgc tttacaagtt gatccatggt
3201 tataatccgg aatgtggcaa tccagaagtg attcaaaact atctggctgc
3251 agtattttct gtgctgcagg aactccgaca cgatcgtgag ctcgttgcca
3301 agctccacca gtggttggtt ccgagtgcca ccacaaaaga acactgaagg
3351 agctcactaa aactagccaa gcatacacga gttgcaagca ttggaagttc
3401 aagcctcgtt acatcaaccg gacaaaatag attataaatt cttagcggga
3451 tttgctttag gattctcatc cgcaatccca ttttcagtag ccggtttata
3501 tttagtttac ctaaggattt cctcccacgt gcgatcaatt gtcaatgagt
3551 acggtcgtgg ttaaaggaaa tgtcaatggt ggtgtacaac aaccaagaag
3601 gcgaagaagg caatcccttc gcaggcgcgc taacagagtt cagccagtgg
3651 ttatggtcac ggcccctggg caacccaggc gccgaagacg tagaagagga
3701 ggcaatcgcc gctcaagaag aactggagtt ccccgaggac gaggctcaag
3751 cgagacattc gtgtttacaa aggacaacct catgggcaac tcccaaggaa
3801 gtttcacctt cgggccgagt ctatcagact gtccggcatt caaggatgga
3851 atactcaagg cctaccatga gtataagatc acaagcatct tacttcagtt
3901 cgtcagcgag gcctcttcca cctcctccgg ctccatcgct tatgagttgg
3951 acccccattg caaagtatca tccctccagt cctacgtcaa caagttccaa
4001 attacgaagg gcggcgccaa aacttatcaa gcgcggatga taaacggggt
4051 agaatggcac gattcttctg aggatcagtg ccggatactg tggaagggaa
4101 atggaaaatc ttcagatacc gcaggatcct tcagagtcac catcagggtg
4151 gctttgcaaa accccaaata ggtagactcc ggatcagagc ctggtccaag
4201 cccacaacca acacccactc caactcccca gaagcacgag cgatttattg
4251 cttacgttgg catacctatg ctaaccattc aggccaggga gaacgacgac
4301 caaatcacat tgggttcctt agggaaccaa aggatgaaat atatagagga
4351 cgagaaccag agctatacaa atgttagttc tgagtattac tctcaatcga
4401 gcatgcaagc cgtccctatg tattacttta atgtcccgaa agggcaatgg
4451 tcagtcgaca ttagctgcga agggtatcaa cccactagca gcacctcgga
4501 tccaaaccgg ggtaggagtg acgggatgat cgcgtattca aacgcggact
4551 ccgattattg gaatgttggt gaagcggatg gtgtcaaaat ttcgaagcta
4601 cgcaacgata acacctaccg ccaaggtcac ccagaacttg aaattaactc
4651 gtgtcatttt cgcgagggcc aactccttga acgggacgct acaattagct
4701 ttcacgttga agcgcctact gatgggcgat tctttctcgt tggtcccgcc
4751 atccagaaaa ccgcaaagta taactatact atctcatacg gtgattggat
4801 ggaccgagat atggaactgg ggctgatcac cgtggtgctt gatgaacatt
4851 tagaaggcac tggttcggct aacagagtgc ggcggccccc acgggagggc
4901 cacacctata tggcctcgcc gcgcgaaccg gaaggaaaac cggttggaaa
4951 taaaccaagg gacgaaaccc cgatacaaac gcgagaaaga caactcgatc
5001 aaactccgtc tgacgacgta tccgatgctg gttcggtaaa caacggcggc
5051 tcagctgagt cgctgcaatt ggagttcggg gtaaattcag atagtaccta
5101 cgatgctaca gtcgatagta cagactggcc cagaattcct ccaccaaggc
5151 acccacctga acctagagtt tccggcaatt caagaactgt tactgacttt
5201 tctccgaaag ccgatctatt ggagaattgg gatgccgagc acttcgaccc
5251 tggttattcc aaagaagatg tcgctgctgc tactattata gcgcacggca
5301 gtattcaaga tgggcgaagt atgttggaga agagagagga aaatgtcaag
5351 aacaaaacct cctcctggaa gcccccgtta cctaaagcgg tgagcccagc
5401 catagccaaa ttgcgctcaa ttcgcaaatc ccaacccctc gagggaggga
5451 tccttaagaa agacgccact gatggtgtct catctattgg cagtggttct
5501 ctaacaggtg gcacgcttaa gaggaaggtg actattgaag agcgtttact
5551 gcagacctta acaactgaac aaaggctgtg gtacgagaat ttgaagaaaa
5601 ctaaccctct agctgctacc caatggctgt ttgaatatca gccacctccc
5651 caagtagata gaagtatagc tgaaaagcca ttccaaggga ggaaatgagt
5701 cgactcacga cttaaaactg agtgtccgcc ggacattaag cggaacgaaa
5751 gccgaaaggt gattaggctc tcaacgcctg ctagagaccg tcgaaagacg
5801 cgactgtgta gccaagatcc tcttacaggg ttgtgtag