Sequence of DPV Potato leafroll virus
Potato leafroll virus strain Fr1, complete genome.
ACC No: AF453391
Dated: 2006-12-08 | Length: 5865 | CRC: -1462417464
ID AF453391; SV 1; linear; genomic RNA; STD; VRL; 5865 BP.
XX
AC AF453391;
XX
DT 14-FEB-2002 (Rel. 70, Created)
DT 08-DEC-2006 (Rel. 90, Last updated, Version 5)
XX
DE Potato leafroll virus strain Fr1, complete genome.
XX
KW .
XX
OS Potato leafroll virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5865
RX PUBMED; 12075102.
RA Guyader S., Ducray D.G.;
RT "Sequence analysis of Potato leafroll virus isolates reveals genetic
RT stability, major evolutionary events and differential selection pressure
RT between overlapping reading frame products";
RL J. Gen. Virol. 83(Pt 7):1799-1807(2002).
XX
RN [2]
RP 1-5865
RA Guyader S., Giblot Ducray D.;
RT ;
RL Submitted (28-NOV-2001) to the EMBL/GenBank/DDBJ databases.
RL UMR BiO3P, Institut National de la Recherche Agronomique, Domaine de la
RL Motte, BP 35327, Le Rheu Cedex 35653, France
XX
CC Genome sequence lacks part of non-coding region.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5865
FT /organism="Potato leafroll virus"
FT /strain="Fr1"
FT /mol_type="genomic RNA"
FT /country="France"
FT /db_xref="taxon:12045"
FT 5'UTR <1. .53
FT CDS 54. .797
FT /codon_start=1
FT /product="P0"
FT /db_xref="InterPro:IPR006755"
FT /db_xref="UniProtKB/TrEMBL:Q8QHN2"
FT /protein_id="AAL77937.1"
FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH
FT EQIYRICRSFLYVLPLLNRKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPTI
FT VIKLDDPTTAAAYRSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELRERSIP
FT QSGLRDLMGNYQHLVRSLLDACKVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA
FT LTGFPVYVPSEDYLEGSFLQKELQE"
FT CDS 187. .2106
FT /codon_start=1
FT /product="polyprotein"
FT /note="P1; proteinase; VPG"
FT /db_xref="InterPro:IPR000382"
FT /db_xref="InterPro:IPR009003"
FT /db_xref="UniProtKB/TrEMBL:Q8QYQ2"
FT /protein_id="AAL77938.1"
FT /translation="MNRFTAYAALFFMFSLCSTAKEAGFQHPAFNFRGTSTMSALSGDY
FT SAAPTPLYKSWALPSSSNLTTQPLPPLTDRSYYELVQALTSKMRLDCLTVGDMTWRHLS
FT EMLFASWNSVREVSLKAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC
FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS
FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK
FT STRNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH
FT QFVSVLCNTGPGYSGTGFWSSKSLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE
FT STAVKGRVFSDEAVKELEREAKEAVVKLARFKSLAGKNWADDYDSDEDYGLEREAATNA
FT PAEKTAQTNSAEKTAPSTSAEKTALTNKPLNGQAAPSAKTNGNSDIPDAATSAPPMDKM
FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKNKHNSSPPTSTQSTN
FT GAPKKEAASQASGSVGTSRATTTPAPEAKPSGGTNSAKFIPSWRRKQQDSAGQKPDLKL
FT NSKA"
FT CDS <1524. .3374
FT /codon_start=1
FT /product="putative RNA polymerase"
FT /note="P2; translated by ribosomal frameshift"
FT /db_xref="GOA:Q8QYQ1"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:Q8QYQ1"
FT /protein_id="AAL77939.1"
FT /translation="GLRSGERGCNKCARRENCSNKLSREDCSINFSRENCSNKQAFKWA
FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRADHHSYGGENQSLGDRGEDSEQGVSESSAEA
FT QTKEARKAWREEQAQQFTSYFNAIYKWGAQEGGCLPGFRKCGHIPRYYHPRTRGETQWG
FT HKLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK
FT TVEEYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV
FT EDHKLLPVLTQLTFDRLQKMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG
FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKMS
FT GAPSVEKLCANHEEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL
FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL
FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP
FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH"
FT CDS 3572. .5725
FT /codon_start=1
FT /transl_except=(pos:4196. .4198,aa:OTHER)
FT /product="readthrough protein"
FT /note="P5; translated by amber stop codon suppression"
FT /db_xref="GOA:Q8QYP9"
FT /db_xref="InterPro:IPR000893"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q8QYP9"
FT /protein_id="AAL77942.1"
FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRVNRAQPVVMVTAPGQPR
FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL
FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA
FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP
FT TPTPTPQKHERFIAYVGIPMLTIQARENDDQIILGSLGSQRMKYIEDENQNYTNVSSEY
FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN
FT VGEADGVKISKLCNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV
FT GPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSAYRVRRPPREGHTYMAS
FT PREPEGKPVGNKPRDETPIQTQERQPDQTPSDDVSDAGSVNSGGSTESLQLEFGPNSDS
FT TYDATVDGTDWPRIPPPRHPPKPRVSGDSRTVTNFSPKADLLENWDAEHFDPGYSKEDV
FT AAATIIAHGSIQDGRSMLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQPLEGG
FT TLKKDATDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPPAAIQW
FT LHEYQPPPQVDRNIAEKPFQGRK"
FT CDS 3572. .4198
FT /codon_start=1
FT /product="major capsid protein"
FT /note="P3"
FT /db_xref="GOA:Q8QYQ0"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q8QYQ0"
FT /protein_id="AAL77940.1"
FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRVNRAQPVVMVTAPGQPR
FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL
FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA
FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK"
FT CDS 3597. .4067
FT /codon_start=1
FT /product="putative movement protein"
FT /note="P4"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:Q8QYP8"
FT /protein_id="AAL77941.1"
FT /translation="MSMVVYNNQEGEEGNPFAGALTELSQWLWSRPLGNPGAEDAEEEA
FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS
FT QASYFSSSARPLPPPPVPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG"
FT CDS 5130. .5318
FT /codon_start=1
FT /product="P6"
FT /db_xref="UniProtKB/TrEMBL:Q8QHQ0"
FT /protein_id="AAL77943.1"
FT /translation="MLQSMVQTGPEFLHQGTHLNLEFPAIQELLLTFLRKPIYWRIGML
FT NTSTLVIPKKMSLLQLL"
FT CDS 5348. .5725
FT /codon_start=1
FT /product="P7"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q8QHP7"
FT /protein_id="AAL77944.1"
FT /translation="MLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQPLEGGTL
FT KKDATDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPPAAIQWLH
FT EYQPPPQVDRNIAEKPFQGRK"
FT 3'UTR 5726. .>5865
XX
SQ Sequence 5865 BP; 1632 A; 1481 C; 1427 G; 1325 T; 0 other;
af453391 Length: 5865 08-DEC-2006 Type: N Check: 9550 ..
1 gaaattgcag ctttagcgca taaactctac actcattgca aacgttatag
51 catatgattg tattgaccca gtctggaacc ttgctttttg accaaagatt
101 taaactctca aagtttctct tcgttgtcat tgcaacaggt tttcctcttc
151 tcctacagca agcgagctta atttacggtt acaatcatga acagatttac
201 cgcatatgcc gctcttttct ttatgttctc cctttgctca accgcaaaag
251 aggcaggatt tcaacatccg gccttcaact tccgaggcac ctccactatg
301 agtgccttga gtggggatta ctctgcggca cccaccccgc tatacaaatc
351 gtgggcccta ccatcgtcat caaacttgac gacccaacca ctgccgccgc
401 ttacagatcg gagctactac gagttagttc aagctcttac atccaaaatg
451 cggctggatt gtctaacggt tggggacatg acatggaggc atttgtcaga
501 aatgctattt gcctcctgga actccgtgag agaagtatcc ctcaaagcgg
551 cctccgtgac cttatgggca attatcagca tttggttcgg tctttattgg
601 acgcttgcaa ggttgatcac tttgttcctc tggactttca gcatagaagc
651 cttatgctta attttgctcg gttgtataac cagcttgatc tacaagggcg
701 cgctaagtct ttcagagcac ttaccggttt tcctgtttat gtcccctctg
751 aagattattt ggagggcagc tttctccaaa aggaattaca agaatgagag
801 ggctgtggaa ggatacaaag ggttttcggt cccacagaaa ccgccaaagt
851 ctgccgtaat tgaactacaa catgaaaacg gcagccatct cgggtacgcg
901 aactgcattc gcttgtacag tggagagaac gccttggtga cagctgaaca
951 ctgtctagaa ggcgctttcg caacgtcgtt gaaaactgga aacaggattc
1001 cgatgtcgac tttctttccc attttcaaaa gtacccgtaa tgatatctcc
1051 atactagtag gtccacccaa ctgggaaggt ctactatcag tcaaaggagc
1101 tcatttcatt acagctgaca aaatcggcaa aggtcctgcc tctttctaca
1151 ctcttgagaa aggggagtgg atgtgccata gtgccaccat agatggagct
1201 catcaccagt tcgtgtctgt tttatgcaac actggacccg gatattccgg
1251 aacagggttt tggtcttcaa agagtctgct tggtgtgctt aaaggcttcc
1301 cactggagga ggagtgtaac tacaatgtta tgtctgttat accctcgatc
1351 ccaggaatca cttccccaaa ttatgtgttt gagtcgaccg ccgtaaaagg
1401 ccgcgtcttc tcggatgaag ctgtgaaaga gctagagcgg gaagcaaaag
1451 aagccgttgt gaagcttgcc agatttaaat cacttgccgg caagaactgg
1501 gctgatgatt atgactccga tgaggattac ggtctggaga gagaggctgc
1551 aacaaatgcg cccgcagaga aaactgctca aacaaactca gcagagaaga
1601 ctgctccatc aacttcagca gagaaaactg ctctaacaaa caagccttta
1651 aatgggcaag cggcaccgtc cgccaaaaca aacggcaact ccgacatccc
1701 cgacgccgct acaagcgcac caccaatgga caaaatggtc gagcagatca
1751 tcacagctat ggtggggaga atcaatctct cggagataga ggagaagata
1801 gtgagcaggg tgtctcagaa agctctgcag aagcccaaac aaaagaagcg
1851 cggaaggcgt ggagggaaga acaagcacaa cagttcacct cctacttcaa
1901 cgcaatctac aaatggggcg cccaagaagg aggctgcctc ccaggcttca
1951 ggaagtgtgg gcacatcccg cgctactacc acccccgcac cagaggcgaa
2001 acccagtggg ggcacaaact ctgccaagtt catcccgagc tggcggagaa
2051 aacagcagga ttcggctggc caaaagccgg atctgaagct gaactccaaa
2101 gcctgaatct acaggctgcc aggtggctcc aacgcgcgga gtcggccact
2151 atccctggcg cagaagcaag aaagcgcgtg atcgagaaaa cagtggagga
2201 atacagaaat tgtgtaacta acgccccact gtgctccctt aaatccaaac
2251 tggattgggc tggctttcaa caagatatcc gtgaagcagt ccagtccctt
2301 gagctagacg ctggtgtagg cattccctat atcgcgtatg gcctccccac
2351 acaccgagga tgggttgagg accataagct tctcccagtg ctcactcagc
2401 tgacctttga ccgtttacag aagatgtcag aggccagctt tgaggatatg
2451 agcgcagaag agctggttca agaagggctc tgtgacccta tcagactatt
2501 tgtcaaagga gagccccaca aacagagcaa actcgatgaa ggccgctacc
2551 gcctcatcat gtctgtttcc ttggtggatc aactggtagc ccgggttctg
2601 ttccaaaatc agaacaaaag ggaaatttcc ctatggaggt ctgtgccttc
2651 caaacccggt tttggccttt caactgacac tcaaactgct gaattcttgg
2701 agtgtcttca aaagatgtct ggagcgccat ctgtggaaaa attgtgtgca
2751 aatcacgagg agtacacgcg cccaaccgac tgttccggtt tcgactggtc
2801 agtcgcgtat tggatgctgg aggatgatat ggaggtgaga aatcgcctga
2851 catttaataa cacccagctc accaagcgcc ttcgggctgc ctggttgaag
2901 tgcataggaa actccgtcct gtgcctgtcc gatggcactt tacttgccca
2951 aactgttccc ggtgtgcaaa agagcggaag ttacaataca agttcctcca
3001 actctagaat ccgggttatg gctgcctatc actgtggcgc cgactgggca
3051 atggccatgg gggacgatgc tcttgaagcc cccaactccg acctagagga
3101 gtataaaaca ctaggtttca aagtcgaggt aggtcgagaa ctcgaattct
3151 gttcacacat cttcagaaat ccgaccctcg ccgttccggt caacaccaac
3201 aaaatgcttt acaagttgat ccatggttac aatccggaat gtggcaatcc
3251 agaagtgatt caaaactatc tggctgcagt attctctgtg ctgcaggaac
3301 tccgacacga tcgtgagctc gttgccaagc tccaccagtg gttggttccg
3351 agtgccacca caaaagaaca ctgaaggagc tcactaaaac tagccaagca
3401 tacacgagtt gcaagcattg gaagttcaag cctcgttaca tcaaccggat
3451 aaaatagatt ataaattctt agcgggattt gctttaggat tctcatccgc
3501 aatcccattt tcagtagccg gtttatattt agtttaccta aagatttcct
3551 cccacgtgag atcaattggt aatgagtacg gtcgtggtta agggaaatgt
3601 caatggtggt gtacaacaac caagaaggcg aagaaggcaa tcccttcgca
3651 ggcgcgttaa cagagctcag ccagtggtta tggtcacggc ccctgggcaa
3701 cccaggcgcc gaagacgcag aagaggaggc aatcgccgct caagaagaac
3751 tggagttccc cgaggacgag gctcaagcga gacattcgtg tttacaaagg
3801 acaacctcat gggcaactcc caaggaagtt tcaccttcgg gccgagtcta
3851 tcagactgtc cggcattcaa ggatggaata ctcaaggcct accatgagta
3901 taagatcaca agcatcttac ttcagttcgt cagcgaggcc tcttccacct
3951 cctccggttc catcgcttat gagttggacc cccattgcaa agtatcatcc
4001 ctccagtcct acgtcaacaa gttccaaatt acgaagggcg gcgccaaaac
4051 ttatcaagcg cggatgataa acggggtaga atggcacgat tcttctgagg
4101 atcagtgccg gatactgtgg aagggaaatg gaaaatcttc agataccgca
4151 ggatccttca gagtcaccat cagggtggct ttgcaaaacc ccaaataggt
4201 agactccgga tcagagcctg gtccaagccc acaaccaaca cccactccaa
4251 ctccccagaa gcacgagcgt tttattgctt acgttggcat acctatgcta
4301 accattcaag ccagggagaa cgacgaccaa atcatattgg gttccttagg
4351 gagccaaagg atgaaatata tagaggacga gaaccagaac tatacaaatg
4401 ttagttctga gtattactct caatcgagca tgcaagccgt ccctatgtat
4451 tacttcaatg tcccgaaagg gcaatggtca gtcgacatca gctgcgaagg
4501 gtatcaaccc actagcagca cctcggatcc aaaccggggt aggagtgacg
4551 ggatgatcgc gtattcaaac gcggattccg attattggaa tgttggtgaa
4601 gcggatggtg tcaaaatttc gaaactatgc aacgataaca cctaccgcca
4651 aggtcaccca gaacttgaaa ttaactcgtg tcattttcgc gagggccaac
4701 tccttgaacg ggacgctaca attagcttcc acgttgaagc gcctactgat
4751 gggcgattct ttctcgttgg tcccgccatc cagaaaaccg caaagtataa
4801 ctatactatc tcatacggtg actggacgga ccgagatatg gaactggggc
4851 tgatcaccgt ggtgcttgat gaacatttag aaggcactgg ttcggcttac
4901 agagtgcggc ggcccccacg ggagggccac acctatatgg cctcgccgcg
4951 cgaaccggaa gggaaaccgg ttggaaataa accaagggac gaaaccccga
5001 tacaaacgca ggaaagacaa cctgatcaaa ctccgtctga tgacgtatcc
5051 gatgctggtt cggtaaacag cggcggctca actgagtcac tgcaattgga
5101 gttcgggcca aactcagata gtacctacga tgctacagtc gatggtacag
5151 actggcccag aattcctcca ccaaggcacc cacctaaacc tagagtttcc
5201 ggcgattcaa gaactgttac taacttttct ccgaaagccg atctattgga
5251 gaattgggat gctgaacact tcgaccctgg ttattccaaa gaagatgtcg
5301 ctgctgcaac tattatagcg cacggcagta ttcaagatgg gcgaagtatg
5351 ttggagaaga gagaggaaaa tgtcaagaac aaaacctcct cctggaagcc
5401 cccgttacct aaagcggtga gcccagccat agctaaattg cgctcgattc
5451 gcaaatccca acccctcgag ggagggaccc ttaagaaaga cgccactgat
5501 ggtgtctcat ctattggcag tggttctcta acaggtggca cgcttaagag
5551 gaaggtaact attgaagagc gtttactgca gactttgaca actgaacaaa
5601 ggctgtggta cgagaatttg aagaaaacta accctccagc tgctatccaa
5651 tggctgcatg aatatcagcc acctccccaa gtggatagaa acatagctga
5701 aaagccattc caagggagga aatgagtcga ctcacgactt aaaactgagt
5751 gtccaccgga cattaagcgg aacgaaagcc gaaaggtgat taggctctca
5801 acgcctgcta gagaccgtcg aaagacgcga ctgtgtagcc aggatcctct
5851 tacagggttg tgtag