Sequence of DPV Potato leafroll virus
Potato leafroll virus strain CIP01, complete genome.
ACC No: AF453392
Dated: 2006-12-08 | Length: 5865 | CRC: 1508841657
ID AF453392; SV 1; linear; genomic RNA; STD; VRL; 5865 BP.
XX
AC AF453392;
XX
DT 14-FEB-2002 (Rel. 70, Created)
DT 08-DEC-2006 (Rel. 90, Last updated, Version 5)
XX
DE Potato leafroll virus strain CIP01, complete genome.
XX
KW .
XX
OS Potato leafroll virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5865
RX PUBMED; 12075102.
RA Guyader S., Ducray D.G.;
RT "Sequence analysis of Potato leafroll virus isolates reveals genetic
RT stability, major evolutionary events and differential selection pressure
RT between overlapping reading frame products";
RL J. Gen. Virol. 83(Pt 7):1799-1807(2002).
XX
RN [2]
RP 1-5865
RA Guyader S., Giblot Ducray D.;
RT ;
RL Submitted (28-NOV-2001) to the EMBL/GenBank/DDBJ databases.
RL UMR BiO3P, Institut National de la Recherche Agronomique, Domaine de la
RL Motte, BP 35327, Le Rheu Cedex 35653, France
XX
CC Genome sequence lacks part of non-coding region.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5865
FT /organism="Potato leafroll virus"
FT /strain="CIP01"
FT /mol_type="genomic RNA"
FT /country="Peru"
FT /db_xref="taxon:12045"
FT 5'UTR <1. .53
FT CDS 54. .797
FT /codon_start=1
FT /product="P0"
FT /db_xref="InterPro:IPR006755"
FT /db_xref="UniProtKB/TrEMBL:Q8QYP7"
FT /protein_id="AAL77945.1"
FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLLYGYNH
FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPSI
FT IVELDNPTTAAAYRSELLRISSSSYVKNSVGSSNGWGHDMEAFVRNAICLLELRERSIP
FT QSGLRNLMGNYQHLVRSLLDACTVDYFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA
FT LTGFPVYVPSEDYLEGSFLQKELQE"
FT CDS 187. .2106
FT /codon_start=1
FT /product="polyprotein"
FT /note="P1; proteinase; VPG"
FT /db_xref="InterPro:IPR000382"
FT /db_xref="InterPro:IPR009003"
FT /db_xref="UniProtKB/TrEMBL:Q8QYP6"
FT /protein_id="AAL77946.1"
FT /translation="MNRFTAFAALFFMFSLCSTAKEAGFQHPAFNFRGTSIMSVSSGDY
FT SAAPTPLYKSWALPSLSNSTTPPPPLLTDRSYYELVQALMLKIRLDLQMVGDMTWRHLS
FT EMLFASWNSVREVSLRAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC
FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS
FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK
FT STRNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH
FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE
FT STAVKGRVFSDEVVKELEREASEAVKKLARFKSLTGKNWADDYDSDEDYGLEREAATNA
FT PAEKTAQTNSAEKTAPSTSAERTASTNKPLNGQAAPSATTNGNSDIPDVATSAPPMDKM
FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKNKHNSSPPTSTQSTS
FT GAPKKEAAPQASGSADTSRATTTPAPKAKPSGGKNSAKFIPSWRRKQQDSAGQKPDLKL
FT NSKA"
FT CDS <1524. .3374
FT /codon_start=1
FT /product="putative RNA polymerase"
FT /note="P2; translated by ribosomal frameshift"
FT /db_xref="GOA:Q8QYP5"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:Q8QYP5"
FT /protein_id="AAL77947.1"
FT /translation="GLRPGERGCYKCARRENCSNKLSREDCSINFSRENCFNKQAFKWA
FT SGTVRHNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAEA
FT QTKEARKAWREEQAQQFTSYFNAIYKWGAQEGGCPPGFRKCGHIPRYYHPRTKGETQWG
FT QKLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK
FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV
FT EDHKLLPVLTQLTFDRLQKMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG
FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS
FT GAPSVEELCVNHKEYMRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL
FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGANWAMAMGDDAL
FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP
FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH"
FT CDS 3572. .5725
FT /codon_start=1
FT /transl_except=(pos:4196. .4198,aa:OTHER)
FT /product="readthrough protein"
FT /note="P5; translated by amber stop codon suppression"
FT /db_xref="GOA:Q8QYP3"
FT /db_xref="InterPro:IPR000893"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q8QYP3"
FT /protein_id="AAL77950.1"
FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRSNRVQPVVMVTAPGQPR
FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL
FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA
FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP
FT TPTPTPQKHERFIAYVGIPMLTIQARESDDQIILGSLGSQRMKYIEDENQNYTNISSEY
FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN
FT VGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV
FT GPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRPPREGHTYMAS
FT PREPEGKPVGNKPRDETPIQTQERQPDQTPSNDVSDAGSVNTGGSTESLQLEFGVNSDS
FT TYDATVDGTDWPRIPPPRHPPEPRVSGNSRTVNDFSPKADLLENWDAEHFDPGYSKEDV
FT AAATIIAHGSIQDGRSILEKREENVKNKTSSWKLPLPKAVSPAIATLRSIRKSQPLEGG
FT TLKKDATDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPLAATQW
FT LYEYQPPPQVDRNIAEKPFQGRK"
FT CDS 3572. .4198
FT /codon_start=1
FT /product="major capsid protein"
FT /note="P3"
FT /db_xref="GOA:Q8QYP4"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q8QYP4"
FT /protein_id="AAL77948.1"
FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRSNRVQPVVMVTAPGQPR
FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL
FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA
FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK"
FT CDS 3597. .4067
FT /codon_start=1
FT /product="putative movement protein"
FT /note="P4"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:Q8QYP2"
FT /protein_id="AAL77949.1"
FT /translation="MSMVVYNNQGGEEGNPFVGALTEFSQWLWSRPLGNPGVEDVEEEA
FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS
FT QASYFSSSARPLPPPPVPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG"
FT CDS 5130. .5318
FT /codon_start=1
FT /product="P6"
FT /db_xref="UniProtKB/TrEMBL:Q8QYP1"
FT /protein_id="AAL77951.1"
FT /translation="MLQSMVQTGPEFLHQGTHLNLEFPAIQELLMTFLRKPIYWRIGMP
FT NTSTLVIPKKMSLLLLL"
XX
SQ Sequence 5865 BP; 1628 A; 1473 C; 1425 G; 1339 T; 0 other;
af453392 Length: 5865 08-DEC-2006 Type: N Check: 5564 ..
1 gaaattgcag ctttagcgca taagctttac actcattgcg aacgttatag
51 catatgattg tattgactca gtctggaacc ttgcttttcg accaaagatt
101 taaactttca aagtttcttt ttgttgtaat tgcaacaggt tttcctctcc
151 tcctgcaaca agcgagctta ctttacggtt acaatcatga acagatttac
201 cgcatttgcc gctcttttct ttatgttctc cctttgctca actgcaaaag
251 aggcaggatt tcaacatccg gccttcaact tccgaggcac ctccattatg
301 agtgtctcga gtggggatta ctctgcggca cccaccccgc tatacaaatc
351 gtgggccctt ccatcattgt cgaactcgac aaccccacca ccgccgctgc
401 ttacagatcg gagctactac gaattagttc aagctcttat gttaaaaatt
451 cggttggatc ttcaaatggt tggggacatg acatggaggc atttgtcaga
501 aatgctattt gcctcctgga actccgtgag agaagtatcc ctcagagcgg
551 cctccgtaac cttatgggca attatcagca tttggttcgg tctctattgg
601 acgcttgcac ggttgattac tttgttcctc tggactttca gcatagaagc
651 cttatgctta attttgctcg gttgtataac cagcttgatc tacaagggcg
701 cgctaagtct ttcagagcac ttaccggttt tcctgtttat gtcccctctg
751 aagattattt ggagggcagc tttctccaaa aggaattaca agaatgagag
801 ggctgtggaa ggatacaaag ggttttcggt cccacagaaa ccgccaaagt
851 ctgccgtaat tgaactacaa catgaaaacg gcagccatct cgggtacgcg
901 aactgcattc gcttgtatag tggagagaac gccttggtga cagctgaaca
951 ctgtctagaa ggcgctttcg caacgtcgtt gaaaactgga aacaggattc
1001 cgatgtcgac tttctttccc attttcaaaa gtacccgtaa tgatatctcc
1051 atactagtgg gtccacccaa ctgggaaggt ctactatcag tcaaaggagc
1101 tcatttcatt acagctgaca aaatcggcaa aggtcctgcc tctttctata
1151 ctcttgagaa aggggagtgg atgtgccata gtgccaccat agatggagcc
1201 catcaccagt tcgtgtctgt tttatgcaac actggacccg gatattccgg
1251 aacagggttt tggtcttcaa agaatctgct tggtgtgctt aaaggcttcc
1301 cactggaaga ggagtgtaac tacaacgtta tgtctgttat accctcgatc
1351 ccaggaatca cttccccaaa ttatgtgttt gagtcgaccg ccgtaaaagg
1401 ccgcgtcttc tcggatgaag ttgtgaaaga gctggagcgg gaagcatccg
1451 aagccgttaa gaagcttgcc agatttaaat cacttaccgg caagaactgg
1501 gctgatgatt atgactccga tgaggattac ggcctggaga gagaggctgc
1551 tacaaatgcg cccgcagaga aaactgctca aacaaactca gcagagaaga
1601 ctgctccatc aacttcagca gagagaactg cttcaacaaa caagccttta
1651 aatgggcaag cggcaccgtc cgccacaaca aacggcaact ccgacatccc
1701 cgacgtcgct acaagcgcac caccaatgga caaaatggtc gaacagatca
1751 tcacagctat ggtggggaga atcaatctct cggagataga ggagaagata
1801 gtgagcaggg tgtctcagaa agccctgcag aagcccaaac aaaagaagcg
1851 cggaaggcgt ggagggaaga acaagcacaa cagttcacct cctacttcaa
1901 cgcaatctac aagtggggcg cccaagaagg aggctgcccc ccaggcttca
1951 ggaagtgcgg acacatcccg cgctactacc acccccgcac caaaggcgaa
2001 acccagtggg ggcaaaaact ctgccaagtt catcccgagc tggcggagaa
2051 aacagcagga ttcggctggc caaaagccgg atctgaagct gaactccaaa
2101 gcctgaatct acaggctgcc aggtggctcc aacgtgcgga gtcagccact
2151 atccctggcg cagaagcaag aaagcgcgtg attgagaaaa cagtggaggc
2201 atacagaaat tgtgtaacta acgccccact atgctccctt aaatccaaac
2251 tggattgggc tggctttcaa caagatatcc gtgaagcagt ccagtccctt
2301 gagctagacg ctggtgtagg cattccctat atagcgtacg gcctccccac
2351 acaccgaggg tgggttgagg accataagct tctcccagtg ctcactcagc
2401 tgacctttga ccgactacag aagatgtcag aggccagctt tgaggatatg
2451 agcgcagaag agctggttca agaggggctc tgtgatccta tcagactatt
2501 tgtcaaagga gagccccata aacagagcaa actcgatgaa ggccgctacc
2551 gcctcatcat gtctgtttcc ttggtggatc aactggtagc ccgggttctg
2601 ttccaaaatc agaacaaaag ggaaatttcc ctgtggaggt ctgtgccttc
2651 caaacccggt tttggccttt caactgacac tcaaactgct gaattcttgg
2701 agtgtcttca aaaggtgtct ggagcgccat ctgtggaaga attgtgtgtg
2751 aatcacaagg agtacatgcg cccaaccgac tgttccggtt tcgattggtc
2801 agtcgcgtat tggatgctgg aggatgatat ggaggtgaga aatcgcctaa
2851 catttaataa cacccagctc accaagcgcc ttcgggccgc ctggttgaag
2901 tgcataggaa actccgtcct gtgcctgtcc gatggcactt tacttgccca
2951 aactgttccc ggagtacaaa agagcggaag ttacaacaca agttcctcca
3001 actctagaat ccgggttatg gctgcctatc actgtggcgc caactgggca
3051 atggccatgg gggacgatgc tcttgaagcc cccaactccg acctggagga
3101 gtataaaaca ctaggtttca aagtcgaggt aggtcgagaa ctcgaattct
3151 gttcacacat cttcagaaat ccgaccctcg ccgttccggt caacaccaac
3201 aaaatgcttt acaagttgat ccatggttac aatccggaat gtggcaatcc
3251 agaagtgatt caaaattatc tggctgcagt attctctgtg ctgcaggaac
3301 tccgacacga tcgtgagctc gttgccaagc tccaccagtg gttggttccg
3351 agtgccacca caaaagaaca ctgaaggagc tcactaaaac tagccaagca
3401 tacgcgagtt gcaagcattg gaagttcaag cctcgttaca gcaaccggac
3451 aaaatagatt ataaatttct agcgggattt gctttaggat tctcatccgc
3501 aatcccattt tcagtagccg gtttatattt agtttaccta aagatttcct
3551 cccacgtgcg atcaattgtt aatgagtacg gtcgtggtta aaggaaatgt
3601 caatggtggt gtacaacaac caaggaggcg aagaaggcaa tcccttcgta
3651 ggcgctctaa cagagttcag ccagtggtta tggtcacggc ccctgggcaa
3701 cccaggcgtc gaagacgtag aagaggaggc aatcgccgct caagaagaac
3751 tggagttccc cgaggacgag gctcaagcga gacattcgtg tttacaaagg
3801 acaacctcat gggcaactcc caaggaagtt tcaccttcgg gccgagtcta
3851 tcagactgtc cggcattcaa ggatggaata ctcaaggcct accatgagta
3901 taagatcaca agcatcttac ttcagttcgt cagcgaggcc tcttccacct
3951 cctccggttc catcgcttat gagttggacc cccattgcaa agtatcatcc
4001 ctccagtcct acgtcaacaa gttccaaatt acgaagggcg gcgccaaaac
4051 ttatcaagcg cggatgataa acggggtaga atggcacgat tcttctgagg
4101 atcagtgccg gatactgtgg aagggaaatg gaaaatcttc agataccgca
4151 ggatccttca gagtcaccat cagggtggct ttgcaaaacc ccaaataggt
4201 agactccgga tcagagcctg gtccaagccc acaaccgaca cccactccaa
4251 ctccccagaa gcacgagcga tttattgctt acgttggcat acctatgcta
4301 accattcagg ccagggagag cgacgaccaa atcatattgg gttccttagg
4351 gagccaaagg atgaaatata tagaggacga gaaccagaac tatacaaata
4401 ttagttctga gtattactct caatcgagca tgcaagccgt ccctatgtat
4451 tacttcaatg tcccgaaagg gcaatggtca gtcgacatca gctgcgaagg
4501 gtatcaaccc actagcagca cctcggatcc aaaccggggt aggagtgacg
4551 ggatgatcgc gtattcaaac gcggattccg actattggaa tgttggtgaa
4601 gcggatggtg ttaaaatttc gaagctacgc aacgataaca cctaccgcca
4651 aggtcaccca gaacttgaaa ttaactcgtg tcattttcgc gagggccaac
4701 tccttgaacg ggacgctaca attagcttcc acgttgaagc gcctactgat
4751 gggcgattct ttcttgttgg ccccgctatc cagaaaaccg caaagtataa
4801 ctatactatc tcatacggtg actggacgga ccgagacatg gaactggggc
4851 tgatcaccgt ggtgcttgat gaacatttag aaggcactgg ttcggctaac
4901 agagtgcggc ggcccccacg ggagggccac acctatatgg cctcgccgcg
4951 cgaaccggaa ggaaaaccgg ttggaaataa accaagggat gaaaccccga
5001 tacaaacaca ggaaagacaa cctgaccaaa ctccgtctaa cgacgtatcc
5051 gatgctggtt cggtaaacac cggcggctca actgagtcgc tgcaattgga
5101 gttcggggta aactcagata gtacttacga tgctacagtc gatggtacag
5151 actggcccag aattcctcca ccaaggcacc cacctgaacc tagagtttcc
5201 ggcaattcaa gaactgttaa tgacttttct ccgaaagccg atctactgga
5251 gaattgggat gccgaacact tcgaccctgg ttattccaaa gaagatgtcg
5301 ctgctgctac tattatagcg cacggcagta ttcaagatgg gcgaagtata
5351 ttggagaaga gagaggaaaa tgtcaagaac aaaacctcct cctggaagct
5401 cccgttacct aaagcggtga gcccagccat agccacattg cgctcgattc
5451 gcaaatccca acccctcgag ggagggaccc ttaagaaaga cgctactgat
5501 ggtgtctcat ctattggcag tggttctcta acaggtggca cgcttaagag
5551 gaaggtaact attgaagagc gtttactgca gaccttaaca actgaacaaa
5601 ggttgtggta cgagaatttg aagaaaacta accctctagc tgctacccaa
5651 tggctgtatg aatatcagcc acctccccaa gtagatagaa acatagctga
5701 aaagccattc caagggagga aatgagtcga ctcacgactt aaaactgagt
5751 gtccgccgga cattaagcgg aacgaaagcc gaaaggtgat taggctctca
5801 acgcctgcta gagaccgtcg aaagacgcga ctgtgtagcc aggatcctct
5851 tacagggttg tgtag