Sequence of DPV Potato leafroll virus
Potato leafroll virus strain CU87, complete genome.
ACC No: AF453393
Dated: 2006-12-08 | Length: 5865 | CRC: 1548956673
ID AF453393; SV 1; linear; genomic RNA; STD; VRL; 5865 BP.
XX
AC AF453393;
XX
DT 14-FEB-2002 (Rel. 70, Created)
DT 08-DEC-2006 (Rel. 90, Last updated, Version 5)
XX
DE Potato leafroll virus strain CU87, complete genome.
XX
KW .
XX
OS Potato leafroll virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5865
RX PUBMED; 12075102.
RA Guyader S., Ducray D.G.;
RT "Sequence analysis of Potato leafroll virus isolates reveals genetic
RT stability, major evolutionary events and differential selection pressure
RT between overlapping reading frame products";
RL J. Gen. Virol. 83(Pt 7):1799-1807(2002).
XX
RN [2]
RP 1-5865
RA Guyader S., Giblot Ducray D.;
RT ;
RL Submitted (28-NOV-2001) to the EMBL/GenBank/DDBJ databases.
RL UMR BiO3P, Institut National de la Recherche Agronomique, Domaine de la
RL Motte, BP 35327, Le Rheu Cedex 35653, France
XX
CC Genome sequence lacks part of non-coding region.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5865
FT /organism="Potato leafroll virus"
FT /strain="CU87"
FT /mol_type="genomic RNA"
FT /country="Cuba"
FT /db_xref="taxon:12045"
FT 5'UTR <1. .53
FT CDS 54. .797
FT /codon_start=1
FT /product="P0"
FT /db_xref="InterPro:IPR006755"
FT /db_xref="UniProtKB/TrEMBL:Q8QYP0"
FT /protein_id="AAL77952.1"
FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH
FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPTI
FT VIKLDDPTTAAAYRSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELLERNIP
FT QSGLRDLMGNHQHLVRSLLDACEVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA
FT LTGFPVYVPSEDYLEGSLLQKELQE"
FT CDS 187. .2106
FT /codon_start=1
FT /product="polyprotein"
FT /note="P1; proteinase; VPG"
FT /db_xref="InterPro:IPR000382"
FT /db_xref="InterPro:IPR009003"
FT /db_xref="UniProtKB/TrEMBL:Q8QYN9"
FT /protein_id="AAL77953.1"
FT /translation="MNRFTAYAALFFMFSLCSTAKEAGFQHPAFNFRGTSIMSALSGDY
FT SAAPTPLYKSWALPSSLNLTTQPPPPLTDRSYYELVQALISKMRLDCQTVGDMTWRHLS
FT EMLFASWNSLKEISLKAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC
FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS
FT AVIELQHGNGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK
FT SARNDISILVGPSNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH
FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE
FT STAVKGRVFSDEAVKELEREASEAVKKLAIFKSLTGKNWADDYDSDEDYGLEREAATNA
FT PAEKTAQTNSAEKTAPSTSAERTAPTNKPLNGQAAPSAKINGNSDIPDVATSAPPMDKM
FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKNKHNSSPPTSTQSTS
FT GAPKKEAAPQASGSAGTSRATTTPAPEAKPSGGKDSAKFIPSWRRKQQDSAGQKPDLKL
FT NSKA"
FT CDS <1524. .3374
FT /codon_start=1
FT /product="putative RNA polymerase"
FT /note="P2; translated by ribosomal frameshift"
FT /db_xref="GOA:Q8QYN8"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:Q8QYN8"
FT /protein_id="AAL77954.1"
FT /translation="GLRSGERGCNKCARRENCSNKLSREDCSINFSRENCSNKQAFKWA
FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRREDSEQGVSESPAEA
FT QTKEARKAWREEQAQQFTSYFNAIYKWGAQEGGCPPGFRKCGYIPRYYHPRTRGETQWG
FT QRLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK
FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV
FT EDHKLLPVLTQLTFDRLQGMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG
FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS
FT GAPSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL
FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL
FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP
FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH"
FT CDS 3572. .5725
FT /codon_start=1
FT /transl_except=(pos:4196. .4198,aa:OTHER)
FT /product="readthrough protein"
FT /note="P5; translated by amber stop codon suppression"
FT /db_xref="GOA:Q8QYN6"
FT /db_xref="InterPro:IPR000893"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q8QYN6"
FT /protein_id="AAL77959.1"
FT /translation="MSTVVVKGNVNGGAQQPRRRRRQPLRRRANRVQPVVMVTAPGQPR
FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL
FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA
FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP
FT TPTPTPQMHERFIAYVGIPMLTIQARENDDQIILGSLGNQRMKYIEDENQNYTNVSSEY
FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN
FT VGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV
FT GPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRPPREGHTYMAS
FT PREPEGKPVENKPRDETPIQTQERQPDQTPSDDVSDAGSVNSGGSTESLRLEFGVNSDS
FT TYDATVDGTDWPRIPPPRHPPEPRVSGNPRTVTDFSTKADLLENWDAEHFDPGYSKEDV
FT AAATIIAHGSIQDGRSMLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQSLEGG
FT TLKKDATDGVSSIGSGSLTGGTLKRKATIEERLLQTLTTEQRLWYENLKKTNPLAATQW
FT LFEYQPPPQVDRNLAEKPFQGRK"
FT CDS 3572. .4198
FT /codon_start=1
FT /product="major capsid protein"
FT /note="P3"
FT /db_xref="GOA:Q8QYN7"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q8QYN7"
FT /protein_id="AAL77957.1"
FT /translation="MSTVVVKGNVNGGAQQPRRRRRQPLRRRANRVQPVVMVTAPGQPR
FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL
FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA
FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK"
FT CDS 3597. .4067
FT /codon_start=1
FT /product="putative movement protein"
FT /note="P4"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:Q8QYN5"
FT /protein_id="AAL77958.1"
FT /translation="MSMVVHNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDVEEEA
FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS
FT QASYFSSSARPLPPPPAPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG"
FT CDS 5130. .5249
FT /codon_start=1
FT /product="P6"
FT /db_xref="UniProtKB/TrEMBL:Q8QYN4"
FT /protein_id="AAL77955.1"
FT /translation="MLQSMVQTGPEFLHQGTHLNLEFPAIQELSLTFLRKPIY"
FT CDS 5348. .5725
FT /codon_start=1
FT /product="P7"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q8QYN3"
FT /protein_id="AAL77956.1"
FT /translation="MLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQSLEGGTL
FT KKDATDGVSSIGSGSLTGGTLKRKATIEERLLQTLTTEQRLWYENLKKTNPLAATQWLF
FT EYQPPPQVDRNLAEKPFQGRK"
XX
SQ Sequence 5865 BP; 1627 A; 1489 C; 1428 G; 1321 T; 0 other;
af453393 Length: 5865 08-DEC-2006 Type: N Check: 670 ..
1 gaaattgcag ctttagcgca taaactctac actcattgca aacgttatag
51 catatgattg tattgactca gtctggaacc ttgctttttg accaaagatt
101 taaactctca aagtttctct tcgttgtcat tgcaacaggc tttcctcttc
151 tcctgcagca agcgagctta atttacggct acaatcatga acagatttac
201 cgcatatgcc gctcttttct ttatgttctc cctttgctca actgcaaaag
251 aggcaggatt tcaacatccg gccttcaact tccgaggcac ctccattatg
301 agtgccttga gtggggatta ctctgcggca cccaccccgc tatacaaatc
351 gtgggcccta ccatcgtcat taaacttgac gacccaacca ccgccgccgc
401 ttacagatcg gagctactac gagttagttc aagctcttat atccaaaatg
451 cggctggatt gtcaaacggt tggggacatg acatggaggc atttgtcaga
501 aatgctattt gcctcctgga actccttgaa agaaatatcc ctcaaagcgg
551 cctccgtgac cttatgggca atcatcagca tttggttcgg tctctattgg
601 acgcttgcga ggttgatcac tttgttcctc tggactttca gcatagaagc
651 cttatgctta attttgctcg gttgtataac cagcttgatc tacaagggcg
701 cgctaagtct ttcagagcac ttaccggttt tcctgtttat gtcccctctg
751 aagattattt ggagggcagc cttctccaaa aggaattaca agaatgagag
801 ggctgtggaa ggatacaaag ggttttcggt cccacagaaa ccgccaaagt
851 ctgccgtaat tgaattacaa catggaaacg gcagccatct cgggtacgcg
901 aactgcattc gcttgtacag tggagagaac gccttggtga cagctgaaca
951 ctgtctagaa ggcgcttttg cgacgtcgtt gaaaactgga aacaggattc
1001 cgatgtcgac tttctttccc atttttaaaa gtgcccgtaa tgatatctcc
1051 atactagtag gtccatccaa ctgggaaggc ctactatcag tcaaaggagc
1101 tcatttcatt acagctgaca aaatcggcaa aggtcctgcc tctttctaca
1151 ctcttgagaa aggggagtgg atgtgccata gtgccaccat agatggagcc
1201 catcaccagt tcgtgtctgt tttatgcaac actggacccg ggtattccgg
1251 aacagggttt tggtcttcaa agaatctgct tggagtgctt aaaggcttcc
1301 cactggaaga ggagtgtaac tacaatgtta tgtctgttat accctcgatc
1351 ccaggaatca cttccccaaa ctacgtgttt gagtcgaccg ccgtaaaagg
1401 ccgcgtcttc tcggatgaag ctgtgaaaga gctagagcgg gaagcatccg
1451 aagccgtcaa gaagcttgcc atatttaaat cacttaccgg caagaactgg
1501 gctgatgatt atgactccga tgaggattac ggtctggaga gagaggctgc
1551 aacaaatgcg cccgcagaga aaactgctca aacaaactca gcagagaaga
1601 ctgctccatc aacttcagca gagagaactg ctccaacaaa caagccttta
1651 aatgggcaag cggcaccgtc cgccaaaata aacggcaact ccgacatccc
1701 cgacgtcgct acaagcgcac caccaatgga caaaatggtc gaacagatca
1751 tcacagctat ggtggggaga atcaatctct cggagataga agagaagata
1801 gtgagcaggg tgtctcagaa agccctgcag aagcccaaac aaaagaagcg
1851 cggaaggcgt ggagggaaga acaagcacaa cagttcacct cctacttcaa
1901 cgcaatctac aagtggggcg cccaagaagg aggctgcccc ccaggcttca
1951 ggaagtgcgg gtacatcccg cgctactacc acccccgcac cagaggcgaa
2001 acccagtggg ggcaaagact ctgccaagtt catcccgagc tggcggagaa
2051 aacagcagga ttcggctggc caaaagccgg atctgaagct gaactccaaa
2101 gcctgaatct acaggctgcc aggtggctcc aacgcgcgga gtcggccact
2151 atccctggcg cagaagcaag aaagcgcgtg attgagaaaa cagtggaggc
2201 atacagaaat tgtgtaacta acgccccact gtgctccctt aaatccaaac
2251 tggattgggc tggctttcaa caagatatcc gtgaagcagt ccagtccctt
2301 gagctagacg ctggtgtagg cattccctat atcgcgtatg gcctccccac
2351 acaccgagga tgggttgagg accataagct tctcccagtg ctcactcagc
2401 tgacctttga ccgactacag gggatgtcag aggccagctt tgaggatatg
2451 agcgcagaag agctggttca agaagggctc tgtgacccta tcagactatt
2501 tgtcaaagga gagccccaca aacagagcaa actagatgaa ggccgctacc
2551 gcctcatcat gtctgtttcc ttggtggatc aactggtagc ccgggttctg
2601 ttccaaaatc agaacaaaag ggaaatttcc ctgtggaggt ctgtgccttc
2651 caaacccggt tttggccttt caactgacac tcaaactgct gaattcttgg
2701 agtgtcttca aaaagtgtct ggagcgccat ctgtggaaga attgtgtgca
2751 aatcacaagg agtacacgcg cccaaccgac tgttccggtt tcgactggtc
2801 agtcgcgtat tggatgctgg aggatgatat ggaggtgaga aatcgcctga
2851 catttaataa cacccagctc accaagcgcc ttcgagctgc ctggttgaag
2901 tgcataggaa actccgtcct gtgcctgtcc gatggcactt tacttgccca
2951 aactgttccc ggtgtgcaaa agagcggaag ttacaataca agttcctcca
3001 actctagaat ccgggttatg gctgcctatc actgtggcgc cgactgggca
3051 atggctatgg gggacgatgc tctcgaagcc cccaactccg acctggagga
3101 gtataaaaca ctaggtttca aagtcgaggt aggtcgagaa ctcgaattct
3151 gttcacacat cttcagaaat ccgaccctcg ccgttccggt caacaccaac
3201 aaaatgcttt acaagttgat ccatggttat aatccggaat gtggcaatcc
3251 agaagtgatt caaaactatc tggctgcggt attctctgtg ctgcaggaac
3301 tccgacatga tcgtgagctc gttgccaagc tccaccagtg gttggttccg
3351 agtgccacca caaaagaaca ctgaaggagc tcactataac tagccaagca
3401 tacacgagtt gcaagcattg gaagttcaag cctcgttaca tcaaccggac
3451 aaaatagatt ataaattctt agcgggattt gctttaggat tctcatccgc
3501 aattccattt tcagtagccg gtttatattt cgtttaccta aagatttcct
3551 cccacgtgcg atcaatcgtt aatgagtacg gtcgtggtta aaggaaatgt
3601 caatggtggt gcacaacaac caagaaggcg aagaaggcaa ccccttcgca
3651 ggcgcgctaa cagagttcag ccagtggtta tggtcacggc ccctgggcaa
3701 cccaggcgcc gaagacgtag aagaggaggc aatcgccgct caagaagaac
3751 tggagttccc cgaggacgag gctcaagcga gacattcgtg tttacaaagg
3801 acaacctcat gggcaactcc caaggaagtt tcaccttcgg gccgagtcta
3851 tcagactgtc cggcattcaa ggatggaata ctcaaggcct accatgagta
3901 taagatcaca agcatcttac ttcagttcgt cagcgaggcc tcttccacct
3951 cctccggctc catcgcttat gagttggacc cccattgcaa agtatcatcc
4001 ctccagtcct acgtcaacaa gttccaaatt acgaagggcg gcgccaaaac
4051 ttatcaagcg cggatgataa acggggtaga atggcacgat tcttctgagg
4101 atcagtgccg gatactgtgg aaaggaaatg gaaaatcctc agacaccgca
4151 ggatccttca gagtcaccat cagggtggct ttgcaaaacc ccaaataggt
4201 agactccgga tcagagcctg gtccaagccc acaaccaaca cctactccaa
4251 ctccccagat gcacgagcga tttattgctt acgttggcat acctatgctg
4301 accattcagg ccagggagaa cgacgaccaa atcatattgg gttccttagg
4351 gaaccaaagg atgaaatata tagaggacga gaaccagaac tacacaaatg
4401 ttagttctga gtattactct caatcgagta tgcaagccgt ccctatgtat
4451 tactttaatg tcccgaaagg gcaatggtca gtcgacatca gctgcgaagg
4501 gtatcaaccc actagcagca cctcggatcc aaaccggggt aggagtgacg
4551 ggatgatcgc gtattcaaac gcggattccg attattggaa tgttggtgaa
4601 gcggatggtg tcaaaatttc gaagctacgc aacgataaca cctaccgcca
4651 aggtcaccca gaacttgaaa ttaactcgtg tcattttcgc gagggccaac
4701 tccttgaacg ggatgctaca attagcttcc acgttgaagc gcctactgat
4751 gggcgattct ttctcgttgg tcccgctatc cagaaaaccg caaagtataa
4801 ctatactatc tcatacggtg actggacgga ccgagacatg gaactggggc
4851 tgatcaccgt ggtgcttgat gaacatttag aaggcactgg ttcggctaac
4901 agagtgcggc ggcccccacg ggagggccac acctatatgg cttcgccgcg
4951 cgaaccggaa ggaaaaccgg ttgaaaataa accaagggac gaaaccccga
5001 tacaaacgca ggaaagacaa cctgatcaaa ctccgtctga cgacgtatcc
5051 gatgctggtt cggtaaacag cggcggctca actgagtcgc tgcgattgga
5101 gttcggggta aactcagata gtacctacga tgctacagtc gatggtacag
5151 actggcccag aattcctcca ccaaggcacc cacctgaacc tagagtttcc
5201 ggcaatccaa gaactgtcac tgacttttct acgaaagccg atctattaga
5251 gaattgggat gccgaacact tcgaccctgg ttattccaaa gaagatgtcg
5301 ctgctgctac cattatagcg cacggcagta ttcaagatgg gcgaagtatg
5351 ttagagaaga gagaggaaaa tgtcaagaac aaaacctctt cctggaagcc
5401 cccgctacct aaagcggtga gcccagccat agccaaattg cgctcgattc
5451 gcaaatccca atccctcgag ggagggaccc ttaagaaaga cgccactgat
5501 ggtgtctcat ctattggcag tggttctcta acaggtggca cgcttaagag
5551 gaaggcaact attgaagagc gtttactgca gaccttaaca actgaacaaa
5601 ggctgtggta cgagaatttg aagaaaacta accctctagc tgctacccaa
5651 tggctgtttg aatatcagcc acctccccaa gtagatagaa atttagctga
5701 aaagccattc caagggagga aatgagtcga ctcacgactt aaaactgagt
5751 gtccgccgga cattaagcgg aacgaaagcc gaaaggtgat taggctctca
5801 acgcctgcta gagaccgtcg aaagacgcga ctgtgtagcc aggatcctct
5851 tacagggttg tgtag