Sequence of DPV Amapari virus
Amapari virus strain BeAn 70563 segment S, complete sequence.
ACC No: AF485256
Dated: 2003-06-20 | Length: 3341 | CRC: 1144408198
ID AF485256; SV 1; linear; genomic RNA; STD; VRL; 3341 BP.
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AC AF485256;
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DT 18-SEP-2002 (Rel. 73, Created)
DT 20-JUN-2003 (Rel. 76, Last updated, Version 3)
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DE Amapari virus strain BeAn 70563 segment S, complete sequence.
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KW .
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OS Amapari virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
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RN [1]
RP 1-3341
RX DOI; 10.1006/viro.2002.1695.
RX PUBMED; 12504568.
RA Archer A.M., Rico-Hesse R.;
RT "High genetic divergence and recombination in Arenaviruses from the
RT Americas";
RL Virology 304(2):274-281(2002).
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RN [2]
RP 1-3341
RA Archer A.M., Rico-Hesse R.;
RT ;
RL Submitted (20-FEB-2002) to the EMBL/GenBank/DDBJ databases.
RL Virology and Immunology, Southwest Foundation for Biomedical Research, 7620
RL NW Loop 410 @ Military Dr, San Antonio, TX 78227, USA
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FH Key Location/Qualifiers
FH
FT source 1. .3341
FT /organism="Amapari virus"
FT /segment="S (small)"
FT /strain="BeAn 70563"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:45218"
FT gene 62. .1507
FT /gene="GPC"
FT CDS 62. .1507
FT /codon_start=1
FT /gene="GPC"
FT /product="glycoprotein precursor"
FT /db_xref="GOA:Q8B122"
FT /db_xref="InterPro:IPR001535"
FT /db_xref="UniProtKB/TrEMBL:Q8B122"
FT /protein_id="AAN09934.1"
FT /translation="MGQLVSFFQDIQLFFQEALNVALAVVTVLAIIKGLVNLWKSGLFQ
FT FLFFLILAGRSCSFRIGHHTTFESVTMSVGGVFHELPALCRINNSHSLIQLSHNSSLAL
FT SVEYVDLCVVLESDQYLVAGDYSNCTGEATGYNWVIDWTLKGLGHGLEGDPKLHCQPKR
FT STNAEFTLQLNISRRHTNDHYRERIETGIRHMFGPFKILTKEGKDCVILRNTTWKEQCV
FT KSHYNTLAFLLKNTANSLPKRRPLAFFSWSLSDSSGNDMPGGYCLEEWMLIAAKLKCFG
FT NTALAKCNLNHDSEFCDMLKLYEFNKNAISKLNNQTREAVNALTHSINSLISDDLLMKN
FT KLREFLKVPYCNYTKFWYVNHTKSGEHSLPKCWLVNNGSFLNESEFRNEWILESDHLIA
FT EILSKEYQDRQGKTPITLVDMCFWSAIFFDNKSLLHLVGFPTHRHIVGEACPLPHKINR
FT HGACACGLYQKLKKKTAWRKRHQ"
FT gene complement(1607. .3289)
FT /gene="NP"
FT CDS complement(1607. .3289)
FT /codon_start=1
FT /gene="NP"
FT /product="nucleocapsid protein"
FT /db_xref="GOA:Q8BDE7"
FT /db_xref="InterPro:IPR000229"
FT /db_xref="UniProtKB/TrEMBL:Q8BDE7"
FT /protein_id="AAN09935.1"
FT /translation="MANSKEIPSFRWTQALRRELGSFTEPTKGSVLKDAKLIADSLDFT
FT QVSQVQRLLRKTKRTDADLDKLRDLNKEVDKLMSMKSAQRNTVLKVGDLGKDELMDLAS
FT DLEKLKRKIGERPNGGPRLYMGNLSQSQLDKRSDILRSLGFQQQRGPNQGIVRLWDVSD
FT PSKLNNQFGSMPALTIACMTVQGGETMNNVVQALTSLGLLYTVKYPNLDDLEKLTVEHD
FT CLQIITRDESALNISGYNFSLSAATKAGASLIDGGNMLETIKVTPDNFSSIIMATLKVK
FT KREGMFVDEKPGNRNPYENLLYKLCLSGEGWPYIGSRSQIVGRSWDNTSVDLNTKPTVG
FT PRGPERNGQNMRLSNLSELQEAIVREAMQKLDPSNTIWMDIEGPPTDPVELAVLQPSTG
FT YYIHCYRKPHDEKGFKNGSRHSHGILLKDLEDAQPGLLSYIIGLLPQNTVITVQGADDI
FT KRLFDIHGRKDLKLVDVRLTGEQSRIFEQEVWERYGELCKAHNGVIVPKKKHKDNGPQK
FT EPHCALLDCIMFQSVLDGHLPELSLKPLLPGSLVYQARNAFVM"
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SQ Sequence 3341 BP; 893 A; 743 C; 714 G; 991 T; 0 other;
af485256 Length: 3341 20-JUN-2003 Type: N Check: 3519 ..
1 cgcacagtgg atcctaggcg caattgttca cgcaattttg catatctatt
51 aacaattgat catgggtcaa cttgttagtt tctttcagga catacaactc
101 tttttccaag aggctctcaa tgtggctcta gctgttgtca ccgtcctggc
151 tatcattaag gggcttgtga acctttggaa atcaggtctc ttccagttcc
201 tctttttctt aatcctggca ggaaggtctt gctccttcag aattggtcat
251 catacaactt ttgaatctgt cacaatgtca gttgggggag tctttcacga
301 acttcctgct ttgtgcagga tcaataacag ccacagtcta attcaactgt
351 ctcacaacag tagtttagct ttgtctgtcg aatatgtgga tttgtgtgtc
401 gttctagagt cagaccagta tttagtggct ggggattact ccaactgtac
451 tggggaagcg acaggataca actgggttat tgactggacg ctaaagggtc
501 tgggtcacgg tcttgagggc gaccccaagc tgcactgtca gccaaagaga
551 tctaccaatg ctgaattcac cctccaactt aatatatctc ggaggcatac
601 aaatgaccac tacagggaaa gaattgaaac aggaataagg cacatgtttg
651 gtccgttcaa gattttgact aaagaaggga aggattgtgt aatcttaagg
701 aacacaactt ggaaagaaca gtgtgtcaaa agtcattaca acacactagc
751 atttctatta aaaaacacag ccaactctct cccaaagaga aggcccttgg
801 ccttttttag ttggtcactt tctgactcat cagggaatga catgccaggt
851 gggtactgtc ttgaggaatg gatgctcatt gcagcaaaac tcaaatgctt
901 tggaaacaca gctcttgcta agtgcaactt aaatcatgat tctgaatttt
951 gtgacatgtt gaaactgtac gaattcaaca agaatgcaat ttccaaacta
1001 aacaaccaga caagagaagc tgtgaatgca ttgacccact caataaacag
1051 cctaatttct gatgaccttt tgatgaaaaa caaattaaga gaatttctta
1101 aggtcccata ctgcaactac acaaagtttt ggtatgtaaa tcacacaaaa
1151 tctggtgaac attctctgcc aaaatgttgg ttggtgaaca atgggagctt
1201 tttaaatgaa agtgaattta ggaacgaatg gatcttggag agtgatcact
1251 tgattgcaga gatacttagt aaggaatacc aagacaggca gggaaaaacc
1301 ccaataacat tagtcgacat gtgtttttgg agtgctattt tcttcgacaa
1351 caagtctctc ttacacttgg ttggatttcc aactcacaga catattgtag
1401 gagaagcatg tccattgccc cataagatca acagacatgg agcttgtgcc
1451 tgtgggctat accaaaaatt aaagaagaag actgcttgga gaaaaaggca
1501 ccaatagaga ggctcagcct ccctcctcca tcggcccggg acatcccggg
1551 ccgatggagg ggccccccag tccgcggcct gggccgcgga ctggggaggc
1601 atttgcctac atcacaaatg cattccttgc ctgatacacc agactacctg
1651 gtagtaaggg cttcaggctg agttcaggta agtgaccatc aagtacagac
1701 tgaaacatga tgcagtcgag cagggcacag tggggctctt tttgaggacc
1751 attgtccttg tgcttctttt taggaactat cacaccattg tgtgccttgc
1801 agagctcgcc atatctctcc caaacttcct gttcaaaaat tcgtgattgt
1851 tctccagtga gtcttacatc caccaatttt agatcttttc gcccatgtat
1901 gtcaaaaagt ctttttatat catcggcacc ttgaactgta atgacagtgt
1951 tttgaggtag aagcccgatg atgtaactta gaagtccagg ttgggcatcc
2001 tcaagatctt ttaaaagtat tccgtgggag tgtctactgc catttttgaa
2051 acctttttca tcatgtggtt ttctgtaaca atgtatatag tatccagttg
2101 aaggttgaag aacagcaagt tccacggggt ccgtgggggg cccctctata
2151 tccatccata tggtgttgga tggatctaac ttttgcattg cctctctcac
2201 aattgcttcc tgcagctcag aaagattgga aagtctcatg ttttgaccat
2251 tcctttcagg accccttggt cctactgttg gtttggtgtt taagtcaaca
2301 cttgtgttgt cccatgatct ccccacaatt tgagaccttg aaccgatgta
2351 cggccaacct tctccagaga gacacaactt gtagagaagg ttctcatagg
2401 ggttcctatt cccaggtttc tcatccacga acatgccttc tctctttttc
2451 actttcagtg tggccatgat aatggatgaa aagttgtccg gtgtcacttt
2501 gatggtttct aacatgttac ccccatctat aagggaagca ccagcttttg
2551 ttgctgctga aagactgaag ttgtaaccag agatgtttaa agcactctca
2601 tctcttgtaa taatctgaag gcagtcatgc tcaactgtaa gtttctctaa
2651 atcatccaga ttagggtact tcactgtgta aagaagacct aaagatgtca
2701 aggcttgcac cacattgttc atagtctccc ctccttgaac agtcatacat
2751 gcaatggtca atgcaggcat tgacccaaac tgattgttta atttagacgg
2801 atcagaaaca tcccagagtc tcacaattcc ttgattaggt cctctttgct
2851 gttgaaatcc tagtgacctt agaatgtcag accttttgtc cagttgagat
2901 tgggacaaat ttcccatata taatcttgga ccaccattgg gtctctctcc
2951 aatttttctt ttaagctttt ccaaatcact ggccaaatcc atgagttcgt
3001 ctttccccag atcgccaact ttcagtactg tatttctttg agcacttttc
3051 atgctcatta gcttatcaac ttctttgttc aaatctctca gtttgtcgag
3101 atcggcatcg gttctcttcg ttttgcgaag aagcctctgg acttgggaga
3151 cttgagtgaa gtctaagctg tctgctatta acttggcgtc cttcaggaca
3201 cttcccttgg tgggctctgt gaagctgccc agttcccgtc tcagggcctg
3251 agtccagcgg aagctgggaa tctctttgga gtttgccatg aaaagttttt
3301 tgcacaagag ttagacaaaa ttgcctagga tccactgtgc g