Sequence of DPV Parana virus
Parana virus strain 12056 segment S, complete sequence.
ACC No: AF485261
Dated: 2003-06-20 | Length: 3406 | CRC: -546242535
ID AF485261; SV 1; linear; genomic RNA; STD; VRL; 3406 BP.
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AC AF485261;
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DT 18-SEP-2002 (Rel. 73, Created)
DT 20-JUN-2003 (Rel. 76, Last updated, Version 3)
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DE Parana virus strain 12056 segment S, complete sequence.
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KW .
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OS Parana virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
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RN [1]
RP 1-3406
RX DOI; 10.1006/viro.2002.1695.
RX PUBMED; 12504568.
RA Archer A.M., Rico-Hesse R.;
RT "High genetic divergence and recombination in Arenaviruses from the
RT Americas";
RL Virology 304(2):274-281(2002).
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RN [2]
RP 1-3406
RA Archer A.M., Rico-Hesse R.;
RT ;
RL Submitted (20-FEB-2002) to the EMBL/GenBank/DDBJ databases.
RL Virology and Immunology, Southwest Foundation for Biomedical Research, 7620
RL NW Loop 410 @ Military Dr, San Antonio, TX 78227, USA
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FH Key Location/Qualifiers
FH
FT source 1. .3406
FT /organism="Parana virus"
FT /segment="S (small)"
FT /strain="12056"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:45222"
FT gene 53. .1576
FT /gene="GPC"
FT CDS 53. .1576
FT /codon_start=1
FT /gene="GPC"
FT /product="glycoprotein precursor"
FT /db_xref="GOA:Q8B120"
FT /db_xref="InterPro:IPR001535"
FT /db_xref="UniProtKB/TrEMBL:Q8B120"
FT /protein_id="AAN09944.1"
FT /translation="MGQLVTLFQSIPEIIEEAVNIALIAVAIMCIVKGTVNLWKCGIVQ
FT LCIFLLLAGKRCDGFQIDRRHKLESVEFNLTRMFNNLPMSCSKNNTHHYYKGPEGTNWG
FT IELTLTNESVANYSNMSAIRSLAYGNITNCDKTNEAGHTLKWLLNELHFNVLHVTRHIG
FT ARCLTTDSAGILIQYNLTVGDYGGEVGRHLIASLAQIIGDDKAAWVGKCFNNCSANGTC
FT RLTNCEGYTHYNYLIIQNTTWENHCSYSPMSTIRMALNKVAYSSVSRKLLGFFTWDISD
FT SSGRHVPGGYCLEQWALVWAGIKCFDNSVMAKCNKDHNEEFCDTMRLFDFNQNAIKTLQ
FT LNTENSINLLKRSINGLISDSLVIRNSLKQLARIPYCNYTKFWYVNDTITKRHSLPQCW
FT LTYNGSYLNETHFRNDWLLESQQLYNDMLVKEYEERQGKTPIALTDICFWSLVYFTVSV
FT FLQLVGIPSHRHIVGQGCPKPHRISRNGLCSCGYYNIPMKPVRWVRKGK"
FT gene complement(1647. .3327)
FT /gene="NP"
FT CDS complement(1648. .3327)
FT /codon_start=1
FT /gene="NP"
FT /product="nucleocapsid protein"
FT /db_xref="GOA:Q8BDE5"
FT /db_xref="InterPro:IPR000229"
FT /db_xref="UniProtKB/TrEMBL:Q8BDE5"
FT /protein_id="AAN09945.1"
FT /translation="MSEKQVPSFRWTQALRRGLSNWTEPVKVDVIKDARAIISALDFNQ
FT VAQVQRIMRKEKRTDSDLTRLRDMNKEVDALMSMRSTQHNVVLRAGGLSKDELLELSAD
FT LEKLRKKVIRAEGGNPGVYQGNLTATQLNQRAELMKLVGMGPGLRSGNGVVRVWDVKDS
FT SLMINQFGSMPALTIACMTEQGGETMNDVVQGLSALGLVYTVKFPNLDDLEKLSEQHPC
FT LKSITQEQSQINISGYNLSLSAAVKAGACMIDGGNMLETIKMSPPMFSSIIKAVLQVKN
FT REQMFVGSVGVQRNPYENLLYKLCLSGEGWPYIGSRSQIVGRAWDNTLIDLEGKPAVSP
FT PPVKNGGPINLSPLSKGQEDLINQAVQKLSPKETTWIDIEGPAGDPVELAIYQPESGNY
FT LHCYRAPHNESAFKDQSRYSHGLLLKDLKAARPGLISAIIKALPKGMVLTAQGSDDIEQ
FT LILMHGRRDIKVVDVKLTSEHARVFEDPVWDRFNPLCEKHTGLVIKKKKKGAPPSSTNP
FT HCALMDCIMFDATVTGYIRDVKPRQLIPIDLLFKDDLNLINL"
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SQ Sequence 3406 BP; 959 A; 781 C; 680 G; 986 T; 0 other;
af485261 Length: 3406 20-JUN-2003 Type: N Check: 2348 ..
1 cgcacagtgg atcctaggct attgagaatc tctgcgcatt ggaatctcca
51 agatgggaca acttgtgacc ctcttccaat cgatcccaga gatcatagag
101 gaggcagtca acattgctct cattgctgtt gcaataatgt gcattgttaa
151 aggcactgtc aacctatgga agtgtggtat tgtccaactg tgcatctttc
201 tactgttggc agggaaaaga tgtgatgggt ttcaaattga taggaggcac
251 aaactggagt cagttgagtt caacctcacc agaatgttca acaacctccc
301 aatgtcctgt agcaaaaaca acactcacca ttactacaag gggccagagg
351 gaacaaactg ggggattgag ttgaccttga ccaatgaatc tgttgctaat
401 tactctaata tgtcagccat aaggagcctt gcatatggaa acataaccaa
451 ctgtgataag actaatgaag caggtcatac cttaaaatgg ttgctaaatg
501 agctacactt taatgtacta catgtgacac ggcacattgg tgcaaggtgc
551 ctaactacag actcagcggg catactcata cagtataact tgactgtagg
601 agattatgga ggtgaggttg ggagacactt aattgcttca ctagcacaaa
651 ttatagggga tgacaaagca gcgtgggtgg gcaaatgctt caacaactgt
701 tccgcaaatg gtacctgtcg acttaccaac tgtgaaggct acacacatta
751 caattaccta ataattcaaa atacaacatg ggaaaatcac tgtagttact
801 caccaatgtc tactatcaga atggcactaa acaaagttgc ttacagttct
851 gtttcaagaa agctactggg ctttttcact tgggacatat ctgattcatc
901 aggaaggcat gtgccaggtg gctactgtct tgaacaatgg gcacttgtct
951 gggcaggtat aaaatgcttt gacaactcag tgatggcaaa atgcaacaaa
1001 gaccataatg aagagttttg tgatactatg agactctttg acttcaacca
1051 aaatgctata aaaactttac aattgaacac tgagaattcc atcaatcttc
1101 tgaaaaggag tattaacggt ttgatatccg attctcttgt tataagaaac
1151 agtctcaaac aattggctag aattccttat tgtaattaca caaaattctg
1201 gtatgttaat gacacaatca ctaaaagaca tagtcttcct caatgctggc
1251 tgacatacaa cggaagttat ctaaatgaaa cccactttag gaatgattgg
1301 ctgctagaaa gtcaacaact atacaatgac atgctagtca aagaatatga
1351 agagaggcag ggaaaaaccc caattgcatt gacagacatc tgcttttgga
1401 gcctagttta ttttacagtc tcagtcttct tacaacttgt agggattcca
1451 tctcaccgac acattgtggg tcaaggctgt ccaaaacccc atagaatctc
1501 tagaaatgga ttatgtagtt gtggatatta taacatccca atgaaaccag
1551 tgagatgggt taggaaaggc aaataaacta aattggcctc tgccgccctg
1601 atgtctcacc ccctttgggg gtgagacatc agggcccatg aatgtcttca
1651 taggttaatc agattcagat catctttgaa tagaaggtca atggggatga
1701 gctgtcgagg tttcacatcc cgtatgtagc cggtaacagt ggcatcgaac
1751 ataatgcaat ccatcaatgc acagtgtgga ttggtggagg atgggggagc
1801 acccttcttc tttttcttga tcaccaaccc tgtgtgtttc tcacagagtg
1851 gattgaacct atcccaaact ggatcctcaa agaccctcgc atgttcagag
1901 gtcaatttga catcaacaac cttaatatct ctcctcccat gcattaaaat
1951 cagctgttct atatcatcac tgccttgggc agtgagcacc atcccctttg
2001 gtagtgcctt tataattgca cttattaaac caggtctggc agcctttaga
2051 tcctttagaa gcaagccatg tgaataccta ctttggtctt tgaatgcact
2101 ttcattatga ggtgctctat aacagtgtaa gtagttcccg ctttcaggtt
2151 ggtaaatggc aagttccaca ggatctcctg ctggcccctc tatgtcaatc
2201 catgttgttt ctttaggtga caacttttga actgcttgat taatcaggtc
2251 ttcttgtccc ttactcagag gactcaagtt gattggacct ccatttttca
2301 caggcggagg actcactgca ggcttccctt ctaagtcgat caatgtgttg
2351 tcccaggctc tcccaacaat ttgagatctc gacccaatgt aaggccaacc
2401 ctctccactc agacaaagtt tgtaaagtag attttcatat ggattccttt
2451 gaacacccac agatcccaca aacatctgct ccctgttctt tacttgtaga
2501 acagctttta ttatggagct aaacataggt ggactcatct ttatggtctc
2551 caacatgttt cccccatcaa tcatacaagc tcccgctttc acagctgcag
2601 agagactcag attgtaacca gagatgttta tctgtgattg ttcctgggta
2651 attgatttaa gacacgggtg ttgttcactc agcttctcca agtcatcaag
2701 atttggaaat ttcactgtgt aaaccagtcc caatgcagaa agaccctgaa
2751 caacatcatt catagtctcc cccccttgtt ccgtcataca tgctattgtg
2801 agtgcaggca tcgatccaaa ctgatttatc attaatgagc tgtctttgac
2851 atcccacacc ctcacaacac catttccaga tctaagtcca gggcccattc
2901 ctacaagttt cattagttca gctctctggt ttagttgtgt tgctgttaag
2951 ttaccctggt aaacaccagg gttaccccct tcagctctta tcaccttctt
3001 tctgagcttc tccaaatctg ctgaaagttc caaaagttca tcctttgaga
3051 ggccaccagc tctcaggaca acattgtgct gagtagatct cattgacatc
3101 aaggcgtcca cctctttgtt catgtctcta agtcttgtga gatctgaatc
3151 tgttctcttc tcttttctca taatcctttg gacttgtgca acctgattga
3201 aatcaagagc agatattatt gcccttgcat cctttatcac atctacctta
3251 acaggctctg tccagttaga caggcccctc ctgagggctt gagtccaccg
3301 gaagctggga acctgttttt cagacattat ggtaagttcc aggtcttcgg
3351 ttttcccctg attcagccag aagcgtaatc caattcagcc taggatccac
3401 tgtgcg