Sequence of DPV Pirital virus
Pirital virus strain VAV-488 segment S, complete sequence.
ACC No: AF485262
Dated: 2003-06-20 | Length: 3393 | CRC: 565273651
!!NA_SEQUENCE 1.0
ID AF485262 standard; genomic RNA; VRL; 3393 BP.
XX
AC AF485262;
XX
SV AF485262.1
XX
DT 18-SEP-2002 (Rel. 73, Created)
DT 20-JUN-2003 (Rel. 76, Last updated, Version 3)
XX
DE Pirital virus strain VAV-488 segment S, complete sequence.
XX
KW .
XX
OS Pirital virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-3393
RX MEDLINE; 22394560.
RX PUBMED; 12504568.
RA Archer A.M., Rico-Hesse R.;
RT "High genetic divergence and recombination in Arenaviruses from the
RT Americas";
RL Virology 304(2):274-281(2002).
XX
RN [2]
RP 1-3393
RA Archer A.M., Rico-Hesse R.;
RT ;
RL Submitted (20-FEB-2002) to the EMBL/GenBank/DDBJ databases.
RL Virology and Immunology, Southwest Foundation for Biomedical Research, 7620
RL NW Loop 410 @ Military Dr, San Antonio, TX 78227, USA
XX
DR GOA; Q8BDE4.
DR TrEMBL; Q8B119; Q8B119.
DR TrEMBL; Q8BDE4; Q8BDE4.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3393
FT /db_xref="taxon:49891"
FT /mol_type="genomic RNA"
FT /organism="Pirital virus"
FT /strain="VAV-488"
FT /segment="S (small)"
FT gene 47. .1579
FT /gene="GPC"
FT CDS 47. .1579
FT /codon_start=1
FT /db_xref="TrEMBL:Q8B119"
FT /gene="GPC"
FT /product="glycoprotein precursor"
FT /protein_id="AAN09946.1"
FT /translation="MGQFITLMQSIPEALNMAFNVALVIVSLLCVTKGLINLWKCGIIQ
FT LLMFLALAGRSCDGEYKIDRRHVLSHVEFNLTRMFDNLPQSCSINNTHHYYKGPENTTW
FT GVELTLTNTSVMNRSDENVTSIRSLGFGNITNCDKTGEAGHTLKWLLNELHFTVLHVTR
FT HIGALCRTTAGAGLLIQYNLTTSDKGGEVGRHLIASLAQIIGDNKAAWVGKCYNNCTSS
FT GKCSLTNCEGGTHYKFLVIQNTTWPNHCSYSPMSTVRMIIQKTAYSSVSRKLLGFFTWD
FT ISDSSGQHVPGGYCLEQWAIVWAGIKCFDNSVMAKCNKDHNEEFCDTMRLFDFNQNAIK
FT TLQLNVENSLNLMKKSINGLISDSLVIRNSLKQLAKIPYCNYTKFWYVNDTITGKHSLP
FT QCWLVSNGSYLNETHFKNEWLWESQKLYNDMLLKEYEERQGNTPLALADLCFWSLVFFT
FT TTVFFQLIGIPTHRHLIGEGCPKPHRLTSNSLCSCGFYKIPKKPFRWVRKGK"
FT gene complement(1659. .3342)
FT /gene="NP"
FT CDS complement(1660. .3342)
FT /codon_start=1
FT /db_xref="GOA:Q8BDE4"
FT /db_xref="TrEMBL:Q8BDE4"
FT /gene="NP"
FT /product="nucleocapsid protein"
FT /protein_id="AAN09947.1"
FT /translation="MASDNVASFRWTQALRRGLSNWTNPVKSDVITDTRALLAALDFDR
FT VAQVQRLMRKDKRTDTDLTKLRDLNKEVDALMNMRTTQKDNVLRVGGLSKDELMELASD
FT LQKLKKKVLRVEGSGQPGVYAGNLTTTQLEQRSKILRDMGFAQLRGNPSGVVKVWDIKD
FT SSLLINQFGSMPAVTMACMTEQGGESLNDVVQGLSALGLLYTVKYPNMSDLEKLADQYP
FT CLGYITQEQSQINVSGYNLSLSAAVKAGACMLDGGNMLETIQVKPTMFSSMIKAVLEVK
FT SKERMFVSEAPGQRNPYENLLYKLCLSGDGWPYIGSRSQVKGRAWDNTTVDLTDTGSPN
FT HPPVRNGGSPRLSQLSHAKEEQILEGLKRLDSKATTWIDIEGTPNDPVELAIFQPESGN
FT YIHCYREPHDVKSFKDQSKYSHGMLLKDLTNTQPGLISFIIKNLPAGIVLTAQGSDDIE
FT KLLEMHARRDISIIDVRLTSEQARQFEDKVWDKFGILCNKHKGIVLARKKKGSPPGSKN
FT PHCALLDCIMFCSTIGGFVDDKKPTRLLPLDLLYREQASLIEL"
XX
SQ Sequence 3393 BP; 944 A; 775 C; 703 G; 971 T; 0 other;
AF485262 Length: 3393 May 5, 2004 12:52 Type: N Check: 8615 ..
1 cgcacagtgg atcctaggca tacaagtcta cgccttactc ttgatcatgg
51 ggcaattcat aactttgatg caatcgatac cagaagcatt gaacatggct
101 ttcaatgttg ctctagtgat tgtgtcactg ttatgtgtta ccaagggact
151 gatcaacctc tggaaatgcg ggatcattca actcctaatg tttcttgcat
201 tagcaggaag atcctgtgat ggtgaataca agatcgatag gagacatgtc
251 ctgtcacatg tagagtttaa cctaactagg atgtttgaca atctgccaca
301 atcctgctct atcaacaata cacaccatta ctataaggga ccagaaaaca
351 ccacttgggg tgttgagctc acactcacca atacttcagt gatgaataga
401 tctgatgaga atgtcacatc aatcagaagt cttgggtttg ggaacataac
451 caactgtgac aagacaggtg aggcaggcca cactctgaaa tggctcctga
501 acgagcttca cttcacagtg ctccacgtca cgaggcatat aggggctctt
551 tgcagaacaa cagcaggtgc tggcctgttg attcaataca atctgacaac
601 ctctgacaaa ggtggtgaag ttggaagaca tctaatagca tctcttgccc
651 aaatcatcgg agataataaa gcagcatggg ttgggaaatg ctacaacaac
701 tgcaccagct ctggcaagtg ctctctaaca aactgtgagg gtgggacaca
751 ttacaagttt cttgtgattc aaaacaccac atggccaaat cattgctcct
801 attcaccaat gtctactgta aggatgataa ttcaaaaaac agcatacagc
851 tcagtttcca ggaaactctt gggattcttc acatgggaca tttcagactc
901 atcaggccaa catgtgcctg gaggatactg tttggaacag tgggcaattg
951 tctgggcagg aatcaaatgt tttgataact ctgtaatggc caaatgcaac
1001 aaagatcaca atgaggaatt ctgtgacacc atgaggctgt ttgacttcaa
1051 tcaaaatgcg attaaaacat tgcagttaaa tgttgaaaac agtctaaatc
1101 tgatgaaaaa aagcataaat ggtttgattt ctgattcact tgtcatcaga
1151 aacagtctca aacaactggc caaaattccg tactgtaact acaccaagtt
1201 ttggtatgtg aatgacacca taactgggaa acatagtctg cctcaatgtt
1251 ggcttgtctc aaatggtagc tacctaaatg aaacgcattt taaaaatgaa
1301 tggttgtggg aaagccaaaa actttataat gacatgctct tgaaagaata
1351 tgaagaaaga caagggaata cccctttagc tctagctgac ctttgcttct
1401 ggtccttggt gttcttcaca acaacagtat tctttcagtt gattggcatc
1451 cctactcaca gacacctgat tggtgaaggt tgcccaaaac ctcacagatt
1501 gacttcaaat tcattgtgtt catgtggttt ttataagata cccaagaagc
1551 catttagatg ggttaggaaa ggtaaatagg caaccagaaa caagaccagt
1601 aactggcctc gatgtcacac cccaattggg gtgtgacatc gaggctcgcg
1651 tcaaggagtt tagagctcaa tcagtgaggc ttgctctcta tagaggaggt
1701 ccagcggtaa aagtctggtg ggtttcttgt catcaacgaa cccaccaatt
1751 gtggagcaaa acatgatgca gtccagaaga gcacagtgtg ggtttttact
1801 accaggagga gagcctttct tctttcttgc aagaacaatc cccttatgct
1851 tgttgcacag aatgccaaac ttgtcccaga ctttgtcctc gaactgcctt
1901 gcttgttctg aggttaatct cacatctatg attgatatgt ctctccttgc
1951 atgcatctcc aatagtttct caatgtcatc actcccctgt gcagtgagaa
2001 caattcctgc aggaagattc ttgatgataa aggatatcaa cccaggttgt
2051 gtgtttgtaa gatccttcaa gagcattcca tgtgagtatt tactctgatc
2101 tttgaagctc tttacatcat ggggctccct gtagcagtgg atgtagttgc
2151 cgctctcagg ctggaatatt gctaattcca ctggatcatt aggtgtccct
2201 tcaatgtcaa tccaggtagt tgccttgctg tccagtcttt tgagaccctc
2251 gagaatctgt tcttctttag catgactaag ttgagagagt cttggtgagc
2301 ctccattccg cactggtgga tgattgggac taccagtgtc tgttaagtcc
2351 acagtggtgt tgtcccaagc tctccctttg acctgtgatc tagacccgat
2401 gtaaggccac ccatcaccag atagacacaa tttatacaac aagttctcat
2451 aagggttcct ttgccctgga gcctcactga caaacatcct ttcctttgac
2501 ttcacttcca ggacagcctt tatcattgag ctgaacattg taggtttcac
2551 ttgaattgtc tcaagcatgt tgcctccgtc tagcatgcag gcccctgcct
2601 ttacagcagc agaaagactt aggttgtaac cagagacatt aatttgtgat
2651 tgttcctgtg taatgtaacc caaacaagga tattggtcag caagtttttc
2701 taaatctgac atatttgggt acttaactgt gtacaagagc ccaagtgctg
2751 acaaaccctg cacaacatca tttagtgatt caccaccctg ctcagtcatg
2801 catgccattg tcacagcagg catcgatcca aactggttta ttagaagaga
2851 gctatctttg atgtcccaca ctttaactac tccagaggga ttccctctta
2901 gttgagcaaa acccatgtct ctcaagatct ttgacctttg ctctagttgt
2951 gtggtagtta aattaccagc atatacaccc ggttgtccac taccctctac
3001 tctgagtacc ttcttcttga gcttctgtaa gtcagaagca agttccatca
3051 gctcatcttt agataaacca ccaaccctca aaacattatc cttctgtgtt
3101 gttctcatat tcattagtgc atcaacttct ttattaagat ccctcaattt
3151 tgtgaggtcg gtgtcagtcc tcttatcctt tctcatcagc ctctgtacct
3201 gtgcaactct gtcaaagtca agagctgcaa gcagagccct ggtgtcagtg
3251 atgacatcag acttcacagg attggtccaa tttgagagac ctctcctcag
3301 agcctgagtc cacctgaagg atgccacgtt atcagaagcc atatcagggt
3351 tttgagcaaa gcgtttcctt gtttgcctag gatccactgt gcg