Sequence of DPV Tamiami virus
Tamiami virus strain CDC W-10777 segment S, complete sequence.
ACC No: AF485263
Dated: 2003-06-20 | Length: 3533 | CRC: -1857669836
ID AF485263; SV 1; linear; genomic RNA; STD; VRL; 3533 BP.
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AC AF485263;
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DT 18-SEP-2002 (Rel. 73, Created)
DT 20-JUN-2003 (Rel. 76, Last updated, Version 3)
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DE Tamiami virus strain CDC W-10777 segment S, complete sequence.
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KW .
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OS Tamiami virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
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RN [1]
RP 1-3533
RX DOI; 10.1006/viro.2002.1695.
RX PUBMED; 12504568.
RA Archer A.M., Rico-Hesse R.;
RT "High genetic divergence and recombination in Arenaviruses from the
RT Americas";
RL Virology 304(2):274-281(2002).
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RN [2]
RP 1-3533
RA Archer A.M., Rico-Hesse R.;
RT ;
RL Submitted (20-FEB-2002) to the EMBL/GenBank/DDBJ databases.
RL Virology and Immunology, Southwest Foundation for Biomedical Research, 7620
RL NW Loop 410 @ Military Dr, San Antonio, TX 78227, USA
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FH Key Location/Qualifiers
FH
FT source 1. .3533
FT /organism="Tamiami virus"
FT /segment="S (small)"
FT /strain="CDC W-10777"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:45223"
FT gene 81. .1538
FT /gene="GPC"
FT CDS 81. .1538
FT /codon_start=1
FT /gene="GPC"
FT /product="glycoprotein precursor"
FT /db_xref="GOA:Q8AYY5"
FT /db_xref="InterPro:IPR001535"
FT /db_xref="UniProtKB/TrEMBL:Q8AYY5"
FT /protein_id="AAN09948.1"
FT /translation="MGQLISFFGEIPTILQEALNIALIAVSIIATIKGVVNVWKSGLIQ
FT LLMFVMLAGRSCSVQIGHHLELEHIILNSSSILPFTPTLCKLNKTYFLVRGPFQAHWGV
FT DLAIGSTTVAVENATKTYTLKSKNFTGCFEGNPDPDSAALLVTWLFNSLHHDYKNDPSI
FT LCERVSGENSFRFQINISEPEYCEKILSRMANLFGSFENYCLNNRHIKKLIIIRNLTWS
FT QQCHENHMSAMQLITSNIHTQVVRARRILSFFTWSLSDAVGNDMPGGYCLEKWMLIASQ
FT LKCFGNTAVAKCNLNHDSEFCDMLRLFDFNRKAIETLQNKTRSQLNIAINAINSLISDN
FT LLMKNRVKELMDIPFCNYTKFWYVNHTKLNHHSLPRCWLVKNGSYLNESEFRNDWLLES
FT DHLISEILSREYEERQGRTPLSLVDVCFWSTLFYTASIFLHLIRIPTHRHIVGEGCPKP
FT HRLRADSTCACGLYKQKRRPLKWVRSN"
FT gene complement(1720. .3418)
FT /gene="NP"
FT CDS complement(1721. .3418)
FT /codon_start=1
FT /gene="NP"
FT /product="nucleocapsid protein"
FT /db_xref="GOA:Q8BDE3"
FT /db_xref="InterPro:IPR000229"
FT /db_xref="UniProtKB/TrEMBL:Q8BDE3"
FT /protein_id="AAN09949.1"
FT /translation="MSDQSVPSFRWVQSLRRGLSAWTTPVKADVLNDTRALLSGLDFSK
FT VASVQRMMRREKRDDNDLTNLRDLNKEVDSLMTMRSSQKNMFLKVGSLSKDELMELSSD
FT LNKLKEKVQRSERISGSSGVYQGNLTTTQLTRRSEILQLVGIQRPGLNRRGGVVKIWDI
FT KEPEHSLINQFGSTPAVTISCMAEQGGETLNDVVARPNRSVGYFTQQSFLIWVTWRALS
FT SKHSCLKVITQEESQINISGFNLSLSAAVKAGACLVDGGNMLETIKVEESTFTTIIKTL
FT LEIKSKERMFVDITPGQRNPYENLLYKLCLSGEGWPYIASRSQIKGRAWDNTVIEFDVS
FT PRKPPVPIRNGGSPVLTTLKPEVEEQIKRSIESLSVHDTTWIDIEGPPFDPVEMAIYQP
FT DSLKYIHCYRKPNDVKSFKDQSKYCHGILLKDIEYCSSLALYQPSLRHLPKSMVFTAQG
FT SEDIRRLFDMHGRQDLKIVDVKFTAEQSRVFEELTWKRFEHLCDKHKGIVIKSKKKGTT
FT PASTNAHCALMDCIMFSGVLLGAIPNDKPRRLLPLDILFREPDTTVVL"
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SQ Sequence 3533 BP; 950 A; 812 C; 750 G; 1021 T; 0 other;
af485263 Length: 3533 20-JUN-2003 Type: N Check: 6690 ..
1 cgcacagtgg atcctaggcg tttcttgagc ttgcgcaaat agtgattcag
51 ttaattttca gacatactca gaacccgatc atggggcaac tgatctcctt
101 ctttggagag attccaacca ttctgcaaga ggctctcaac attgcactca
151 ttgcagtcag catcattgca accatcaagg gtgtcgtgaa tgtctggaaa
201 agtggtctca tccagctgct catgtttgtt atgttggctg ggaggtcatg
251 ctcagtgcag atagggcatc accttgaact tgagcatata atactgaata
301 gttcttcaat cctaccattc accccaaccc tttgcaaact aaacaagact
351 tacttccttg tgaggggacc cttccaggct cactgggggg tcgatcttgc
401 aataggcagc acaacggttg cagttgaaaa tgcaacgaaa acctacaccc
451 tgaagtctaa aaactttaca ggctgtttcg agggcaaccc cgatccagat
501 tcagcagcac tactggttac ttggttgttc aacagtctgc accatgatta
551 caaaaatgac ccatcaattc tgtgtgagcg tgtgagtggg gagaattctt
601 ttcgattcca gatcaacata agtgaaccag agtactgtga gaaaattctc
651 tctaggatgg ccaacctatt tggcagcttt gaaaactact gcttaaacaa
701 tagacacatt aaaaaactga taatcatcag aaaccttaca tggagtcagc
751 agtgtcacga gaatcacatg agtgccatgc agcttataac ctccaatatc
801 cacacccagg ttgtgagagc caggaggatt ctcagtttct tcacctggtc
851 gttgtcagat gctgtgggaa acgacatgcc aggagggtat tgtttagaaa
901 aatggatgct gattgccagc caactaaaat gttttggcaa tactgctgtt
951 gcaaagtgta acttgaacca tgattctgag ttttgtgaca tgctcagact
1001 ttttgacttc aacagaaaag cgattgagac tctgcagaac aaaacaagga
1051 gccagctaaa tatagctatt aatgccatca actccttaat atctgacaac
1101 ctgttgatga agaatagagt taaggaattg atggatatac ccttttgtaa
1151 ttacaccaaa ttttggtatg tgaatcacac aaaattgaac caccattcac
1201 ttcccagatg ttggttagtg aaaaatggga gttacctcaa tgaatcagag
1251 tttagaaatg attggcttct tgagagtgat cacctcatct ctgagatcct
1301 gagcagagag tatgaggaga ggcaggggcg gacaccccta tcattggtcg
1351 acgtctgctt ttggagcact ttgttttata ctgcatctat ctttctccat
1401 ttgatcagaa ttccaacaca cagacacata gttggtgaag gctgtccaaa
1451 gccccacaga cttagggcag attccacctg tgcatgtggg ttatacaaac
1501 aaaaaagaag gcctcttaag tgggttaggt ccaactaact ctgtgacttg
1551 tggtcacctt cactgccacg cccctgtggg gcgtggcagt aaggcctccg
1601 accggttcat gtgaacgcag tccatgatca acaaaccaca tatgtgaaat
1651 tgctgtccta tggcccccgt tgctgcaccc catctggggt gcagcaacga
1701 gggcccagtt aggtccagat ctagagaaca actgttgtgt caggttctct
1751 gaataagatg tctagtggta gaagccttct gggtttatca ttagggattg
1801 ctcccaacaa aacaccacta aacataatgc aatccattaa cgcgcagtga
1851 gcattggtac ttgctggtgt ggtccctttc ttcttgctct taatgactat
1901 tcctttatgt ttgtcacata gatgttcaaa cctcttccaa gtgagttctt
1951 caaagactct tgattgctca gctgtgaact taacatcaac aatctttaaa
2001 tcttgtctac catgcatatc aaagagcctc cttatatcct cacttccctg
2051 agctgtgaaa accatggact taggaagatg tcttaatgat ggctgatata
2101 atgccaggga cgagcaatac tcaatatcct ttagcaggat tccatggcaa
2151 tatttgcttt gatctttaaa agatttgaca tcattaggtt tccggtagca
2201 gtggatgtat tttagtgagt cgggctggta aattgccatt tcaacagggt
2251 caaatggtgg tccctcaatg tcaatccatg tagtgtcatg aactgagagg
2301 gactcaattg accttttgat ctgctcctct acttcaggct tcaatgttgt
2351 cagcacaggt gagccaccat tcctgatagg aaccggcggc tttcttggtg
2401 agacatcaaa ctcaatgaca gtgttgtccc aagctcgacc cttgatctgt
2451 gatcgtgacg ctatatatgg ccacccctct ccagacaaac aaagcttgta
2501 cagaaggttt tcatatggat ttctctgacc tggcgtgata tcaacaaaca
2551 tcctttcctt tgattttatc tccaatagtg ttttgatgat tgttgtgaag
2601 gttgattctt caacttttat tgtctcaagc atgttcccgc catcaaccaa
2651 acatgcgcct gccttcacag cagcagagag actcaggtta aagccagaaa
2701 tgtttatttg tgactcttct tgggtgatca ctttgagaca ggagtgctta
2751 ctggacaggg ctctccaagt cacccagatt aggaaacttt gctgtgtaaa
2801 gtagcccaca gatctgttag gccttgcaac aacatcattc aaagtctctc
2851 ctccctgttc tgccatgcag gagatggtca ctgcaggggt tgatccaaat
2901 tggttgatga gagagtgctc gggttctttg atgtcccaaa ttttaacaac
2951 acctcccctt ctattcagtc caggcctttg gatgccaact agctgaagaa
3001 tctctgatct tctagtaagt tgtgttgtgg tgagattgcc ttgatacaca
3051 ccactgctcc cacttattct ctctgatctc tgaaccttct cctttaattt
3101 attgagatca ctggagagtt ccattagttc atcttttgac agagacccaa
3151 cctttaagaa catatttttc tgtgatgacc tcattgtcat taaagaatcc
3201 acttccttgt tcaagtccct aaggtttgtc aggtcattgt cgtccctctt
3251 ctctcttctc atcatgcgtt gcacacttgc aacctttgag aagtcaagac
3301 cagacaaaag ggctctggta tcattgagca catctgcttt aactggggtt
3351 gtccatgcag acagccccct tctaagggat tgaacccacc ggaatgatgg
3401 cactgactga tcactcatgg tcaattgaag tagttgagaa gatcccgtgg
3451 gtaccactat ggattgccct ctaagtagta gacacaagtc actctatgcg
3501 tatatcacct aatagcctag gatccactgt gcg