Sequence of DPV Whitewater Arroyo virus
Whitewater Arroyo virus strain 9310141 segment S, complete sequence.
ACC No: AF485264
Dated: 2003-06-20 | Length: 3316 | CRC: -1428154836
ID AF485264; SV 1; linear; genomic RNA; STD; VRL; 3316 BP.
XX
AC AF485264;
XX
DT 18-SEP-2002 (Rel. 73, Created)
DT 20-JUN-2003 (Rel. 76, Last updated, Version 3)
XX
DE Whitewater Arroyo virus strain 9310141 segment S, complete sequence.
XX
KW .
XX
OS Whitewater Arroyo virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-3316
RX DOI; 10.1006/viro.2002.1695.
RX PUBMED; 12504568.
RA Archer A.M., Rico-Hesse R.;
RT "High genetic divergence and recombination in Arenaviruses from the
RT Americas";
RL Virology 304(2):274-281(2002).
XX
RN [2]
RP 1-3316
RA Archer A.M., Rico-Hesse R.;
RT ;
RL Submitted (20-FEB-2002) to the EMBL/GenBank/DDBJ databases.
RL Virology and Immunology, Southwest Foundation for Biomedical Research, 7620
RL NW Loop 410 @ Military Dr, San Antonio, TX 78227, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .3316
FT /organism="Whitewater Arroyo virus"
FT /segment="S (small)"
FT /strain="9310141"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:46919"
FT gene 63. .1505
FT /gene="GPC"
FT CDS 63. .1505
FT /codon_start=1
FT /gene="GPC"
FT /product="glycoprotein precursor"
FT /db_xref="GOA:Q8B118"
FT /db_xref="InterPro:IPR001535"
FT /db_xref="UniProtKB/TrEMBL:Q8B118"
FT /protein_id="AAN09950.1"
FT /translation="MGQLISFFGEIPSIIHEALNIALIAVSIISILKGVINIWGSGLLQ
FT FIVFLLLAGRSCSYKIGHHVELQHIILNASYITPYVPMPCMINDTHFLLRGPFEASWAI
FT KLEITDVTTLVVDTDNVANPTNISKCFANNQDERLLGFTMEWFLSGLEHDHHFTPQIIC
FT GNVSKGEVNAQVNITMEDHCSQVFLKMRRIFGVFKNPCTSHGKQNVLISVSNWTNQCSG
FT NHLSSMHLIVQNAYKQMIKSRTLKSFFAWSLSDATGTDMPGGYCLEKWMLISSELKCFG
FT NTAIAKCNLDHSSEFCDMLKLFEFNRNAIKTLQNDSKHQLDMIITAVNSLISDNTLMKN
FT RLKELINIPYCNYTKFWYVNHTGFNVHSLPRCWLTKNGSYLNVSDFRNQWLLESDHLIS
FT EILSREYEARQGKTPLGLVDVCFWSTLFYVSSIFLHLLRIPTHRHIIGEGCPKPHRLSS
FT DSVCACGLFKQKGRPLRWARKV"
FT gene complement(1577. .3265)
FT /gene="NP"
FT CDS complement(1577. .3265)
FT /codon_start=1
FT /gene="NP"
FT /product="nucleocapsid protein"
FT /db_xref="GOA:Q8BDE2"
FT /db_xref="InterPro:IPR000229"
FT /db_xref="UniProtKB/TrEMBL:Q8BDE2"
FT /protein_id="AAN09951.1"
FT /translation="MSDQSVPSFRWTQSLRRGLSAWTTSVKADVLNDTRALLSGLDFAK
FT VASVQRMMRRVKRDDSDLVGLRDLNKEVDSLMIMKSNQKNMFLKVGSLSKDELMELSSD
FT LEKLKQKVQRTERVGNGTGQYQGNLSNTQLTRRSEILQLVGIQRAGLAPTGGVVKIWDI
FT KDPSLLVNQFGSVPAVTISCMTEQGGESLNDVVQGLTDLGLLYTAKYPNLNDLKALTTK
FT HPSLNIITQEESQINISGYNLSLSAAVKAGACLIDGGNMLETIKIEESTFTTVIKTLLE
FT VKNKEKMFVSPTPGQRNPYENVLYKLCLSGEGWPYIASRSQIKGRAWDNTVVEFDTATV
FT KEPIPIRNGGAPLLTTLKPEIENQVKRSVESLLINDTTWIDIEGPPNDPVEFAIYQPES
FT QRYIHCYRRPNDIKSFKDQSKYCHGILLKDVENARPGLISSIIRSLPKSMVFTAQGADD
FT IRKLFDMHGRQDLKIVDVKLSAEESRIFEDLVWKRFEHLCDKHKGIVIKSKKKGSTPAT
FT TNAHCALLDCIMFSAVISGSVSNEKPKRMLPIDLLFREPETTVVL"
XX
SQ Sequence 3316 BP; 892 A; 722 C; 693 G; 1009 T; 0 other;
af485264 Length: 3316 20-JUN-2003 Type: N Check: 8728 ..
1 cgcacagtgg atcctaggcg ttttgacttg cgcaattaat tgacttcatt
51 cattgcccca caatggggca gctgatctcg tttttcgggg aaattccatc
101 aataatacac gaggccctga acattgcatt aatagcagtc agcatcatat
151 caattctgaa gggtgttatc aacatttggg ggagtggcct actgcagttc
201 attgtgtttc tgctgttggc tgggcgatcc tgctcataca agattggcca
251 tcatgttgaa cttcaacaca taattctgaa tgcatcctac atcacaccct
301 atgtaccaat gccctgcatg atcaatgaca cacatttctt actgaggggt
351 ccttttgagg ccagttgggc catcaagttg gagattactg atgtgacaac
401 tcttgtggtg gacactgaca acgttgctaa tcccacaaac attagcaagt
451 gttttgcaaa caaccaggat gagaggttgt taggcttcac catggagtgg
501 tttttgagtg gattggaaca tgatcaccat ttcactccac agatcatttg
551 tggaaatgta tccaaaggag aggttaatgc tcaagtgaac ataactatgg
601 aggatcattg cagtcaggtg tttttgaaaa tgagaaggat ttttggggtt
651 ttcaaaaacc cttgcacttc acatgggaag cagaatgtgc taatctccgt
701 cagtaattgg accaatcaat gctcagggaa ccacttaagt tccatgcacc
751 ttatagtgca aaatgcatat aaacaaatga tcaaatcaag aactttgaaa
801 agtttttttg cctggtcact gtctgatgcc acagggactg acatgccagg
851 agggtactgt ttggagaaat ggatgctgat ttcaagtgag ctaaaatgtt
901 ttggaaacac tgcaatagct aagtgcaact tggatcacag ttcagagttt
951 tgtgacatgc tcaaattgtt tgagtttaac agaaatgcaa tcaaaacact
1001 tcagaatgac agcaagcatc aactagacat gatcataact gctgtcaact
1051 ctctgatttc agacaatact ctaatgaaaa acagacttaa agaactcatc
1101 aacattcctt attgtaatta tactaagttc tggtatgtga accacactgg
1151 atttaatgtc cattcactgc caagatgttg gctcacaaaa aatggcagtt
1201 acttgaatgt gtctgacttt aggaatcaat ggcttttaga aagtgaccat
1251 ttgatctctg aaatcttaag tagagaatat gaggcaagac aaggcaagac
1301 accacttggg ttggtggatg tatgcttctg gagcaccttg ttttatgttt
1351 catcgatatt tttacaccta ctgagaatac ccacccacag acacataatt
1401 ggtgaaggct gtcccaaacc acatagactt tccagtgact cagtatgtgc
1451 atgtggtctt tttaaacaaa aagggaggcc cttaaggtgg gccaggaaag
1501 tgtagaatgt caaccgaggt ggcctccacc gctgcacccc cttcgggggg
1551 tgcagcggtg gaggcccttt gcagcctcaa aggacgactg ttgtttcagg
1601 ctccctgaag agcaggtcaa tgggaagcat tctctttggt ttctcattgg
1651 aaactgaacc tgatataaca gcactgaaca ttatgcagtc aagaagtgca
1701 cagtgtgcat tggttgttgc aggtgtcgac cccttctttt tactcttgat
1751 gactatcccc ttatgtttgt cacaaaggtg ctcaaatctt ttccaaacaa
1801 ggtcttcaaa aatccgtgac tcttctgcac tcaatttgac atcaacaatc
1851 ttcagatctt gcctgccatg catatcaaaa agtttcctta tatcgtctgc
1901 accttgtgca gtgaagacca ttgatttagg taaactccta attattgatg
1951 aaataagacc tggtcgcgca ttctcaacat ctttcaataa tattccatgg
2001 caatatttac tctgatcttt gaaggatttt atgtcattgg gtctcctgta
2051 acagtgtata tatctctgtg attccggctg gtagatggca aactcaacgg
2101 ggtcatttgg tggcccctca atgtcaatcc atgttgtatc attgataagc
2151 agagactcca cactcctctt cacttgattc tcaatctcag gtttaagtgt
2201 tgtcaacaag ggggcacccc catttcttat aggtatgggc tccttaactg
2251 tggcagtgtc aaactcaaca actgtgttat cccatgctct accttttatc
2301 tgtgatcgtg aggcaatgta aggccagcct tcaccagata gacatagttt
2351 gtagagcaca ttctcgtaag gatttctctg cccaggggtg ggactaacaa
2401 acattttttc cttgtttttg acttccaaaa gtgttttgat gactgttgtg
2451 aatgtagatt cctcaatctt tattgtttca agcatgttgc caccatcaat
2501 aagacaagca ccagctttca cagcagctga taaactgaga ttgtatccag
2551 aaatattgat ctgtgactcc tcctgagtga ttatattcaa ggatggatgt
2601 tttgttgtta gagccttgag atcattgaga tttggatatt ttgctgtgta
2651 cagaagccca aggtcagtaa gaccctggac cacatcattg agggactctc
2701 ccccttgctc agtcatacag gagattgtca cagctggcac agatccaaac
2751 tgattgacca agagtgatgg gtcttttata tcccatatct ttactacacc
2801 tccggttggt gccaagcctg ctctttgtat accgacaagt tgtaggattt
2851 cagatctcct tgttagctgt gtgtttgaaa ggtttccttg gtactgtcct
2901 gtgccgttgc ccaccctttc agttctctgt accttttgtt ttagcttttc
2951 caagtcactg gagagttcca tcagttcatc cttggataaa gaacccactt
3001 tcaggaacat gtttttttgg tttgacttca taatcatcag tgagtccact
3051 tctttgttta gatctctcaa accaacaaga tcactatcat cccttttgac
3101 cctcctcatc atcctttgaa cacttgcgac ctttgcaaag tccaggccag
3151 acaaaagtgc tcttgtatca ttgagaacgt ctgccttgac actagtcgtc
3201 caggcagaga gccctctcct aagagattga gtccagcgga aggatggcac
3251 tgattggtca ctcattcttg attatctttt gcgctgatat cctataagcc
3301 taggatccac tgtgcg