Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate VNW-30 coat protein (cp) gene, partial cds.

ACC No: AF506861

Dated: 2002-09-24 | Length: 837 | CRC: 1705013322

                
ID   AF506861   standard; genomic RNA; VRL; 837 BP.
XX
AC   AF506861;
XX
SV   AF506861.1
XX
DT   24-SEP-2002 (Rel. 73, Created)
DT   24-SEP-2002 (Rel. 73, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate VNW-30 coat protein (cp) gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-837
RX   PUBMED; 12237441.
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   "On the evolution and molecular epidemiology of the potyvirus Papaya
RT   ringspot virus";
RL   J. Gen. Virol. 83(Pt 10):2575-2585(2002).
XX
RN   [2]
RP   1-837
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   ;
RL   Submitted (29-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   School of Life Sciences, Queensland University of Technology, 2 George St,
RL   Brisbane, Queensland 4000, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .837
FT                   /country="Viet Nam"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="VNW-30"
FT                   /specific_host="pumpkin"
FT   CDS             <1. .837
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8BD76"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q8BD76"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="AAN17208.1"
FT                   /translation="GLNEKLKEKEKQKEKEKDKQKDKDDGASDGNDVSTSTKTGERDRD
FT                   VNAGTSGTFTVPRIKSFTDKMILPRIKGKTVLNLNHLLQYNPQQIDISNTRATQSQFEK
FT                   WYEGVRNDYGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDYPIKPLIEH
FT                   ATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKTP
FT                   DRAREAHMQMKAAALRNTSRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN"
XX
SQ   Sequence 837 BP; 293 A; 139 C; 203 G; 202 T; 0 other;

af506861 Length: 837  24-SEP-2002  Type: N  Check: 4314  ..

       1  ggtttgaatg agaagctcaa agagaaagaa aaacaaaaag aaaaagaaaa
      51  agataaacaa aaagataaag atgatggagc tagtgacgga aatgatgtgt
     101  caactagcac aaaaactgga gagagagata gagatgtcaa tgctggaact
     151  agtggaactt tcactgttcc gaggataaag tcatttactg ataagatgat
     201  tttaccaaga attaagggga aaactgtcct taatctgaat catcttcttc
     251  agtataatcc gcaacaaatt gacatctcaa acactcgtgc cactcaatct
     301  caatttgaaa agtggtatga gggagtgagg aatgattatg gccttaatga
     351  caatgaaatg caggtgatgt taaatggttt gatggtttgg tgtatcgaaa
     401  atggtacatc tccagacata tctggtgtct gggtaatgat ggatggggaa
     451  acccaagttg attatcccat taaacctttg attgagcacg caactccttc
     501  atttaggcaa atcatggctc acttcagcaa cgcggcagag gcatacatcg
     551  caaagagaaa tgcaactgag aggtacatgc cgcggtatgg aatcaaaagg
     601  aatttgactg acattagtct cgctagatat gctttcgatt tttatgaggt
     651  gaattcaaaa acacctgata gggctcgtga agctcatatg cagatgaagg
     701  ctgcagcgct acgtaatact agtcgcagaa tgtttggaat ggacggcagt
     751  gtcagtaaca aggaagaaaa cacggagagg cacacagtgg aagatgtcaa
     801  cagagacatg cactctctcc tgggtatgcg caattga