Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate VNP-28 coat protein (cp) gene, partial cds.

ACC No: AF506863

Dated: 2002-09-24 | Length: 846 | CRC: -1007161275

                
ID   AF506863   standard; genomic RNA; VRL; 846 BP.
XX
AC   AF506863;
XX
SV   AF506863.1
XX
DT   24-SEP-2002 (Rel. 73, Created)
DT   24-SEP-2002 (Rel. 73, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate VNP-28 coat protein (cp) gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-846
RX   PUBMED; 12237441.
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   "On the evolution and molecular epidemiology of the potyvirus Papaya
RT   ringspot virus";
RL   J. Gen. Virol. 83(Pt 10):2575-2585(2002).
XX
RN   [2]
RP   1-846
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   ;
RL   Submitted (29-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   School of Life Sciences, Queensland University of Technology, 2 George St,
RL   Brisbane, Queensland 4000, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .846
FT                   /country="Viet Nam"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: P"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="VNP-28"
FT                   /specific_host="Carica papaya"
FT   CDS             <1. .846
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8BD74"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q8BD74"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="AAN17210.1"
FT                   /translation="GLNEKLKEKEKQKEKEKEKDKQKDKDNGGASDGNDVSTSTKTGER
FT                   DRDVNAGTSGTFTVPRIKSFTDKMVLPRIKGKSVLNLNHLLQYNPQQIDISNTRATQSQ
FT                   FEKWYEGVRNDYGLSDNEMQVMLNGLMVWCIENGTSPDIAGVWVMMDGETQVDYPIKPL
FT                   IEHATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNS
FT                   KTPDRAREAHMQMKAAALRNTSRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN
FT                   "
XX
SQ   Sequence 846 BP; 298 A; 139 C; 205 G; 204 T; 0 other;

af506863 Length: 846  24-SEP-2002  Type: N  Check: 6659  ..

       1  ggtctgaatg aaaagctgaa agaaaaggaa aaacagaaag agaaagaaaa
      51  agaaaaagat aaacaaaaag ataaagataa tggtggagct agtgacggaa
     101  atgatgtgtc aactagcaca aaaactggag agagagatag agatgtcaac
     151  gccggaacta gtggaacttt cactgttcca aggataaagt cttttactga
     201  taagatggtt ttaccaagaa ttaagggaaa gtctgtcctt aatttaaatc
     251  atcttcttca gtataatccg caacaaattg acatctcaaa cactcgtgcc
     301  actcaatctc aatttgaaaa gtggtatgag ggagtgagga atgattatgg
     351  tcttagtgat aatgaaatgc aagtgatgtt aaatggttta atggtttggt
     401  gtatcgaaaa cggtacatct ccagacatag ctggtgtttg ggtaatgatg
     451  gatggggaaa cccaggtcga ttatcccatc aaacctttaa ttgaacatgc
     501  aactccttca ttcaggcaaa tcatggctca tttcagtaac gcggcagagg
     551  catatatcgc gaagagaaat gcaactgaga ggtacatgcc gcggtatgga
     601  atcaaaagga atttgactga cattagtctc gctcgatatg ctttcgattt
     651  ctatgaggtg aattcgaaaa cacctgatag ggctcgtgaa gctcatatgc
     701  agatgaaggc tgcagcgcta cgtaatacta gtcgcagaat gttcggaatg
     751  gatggcagtg tcagtaacaa ggaagaaaac acggagagac acacagtgga
     801  agatgtcaac agagacatgc actctctcct gggtatgcgc aattaa