Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate VNP-08 coat protein (cp) gene, partial cds.

ACC No: AF506883

Dated: 2002-09-24 | Length: 837 | CRC: -474955567

                
ID   AF506883   standard; genomic RNA; VRL; 837 BP.
XX
AC   AF506883;
XX
SV   AF506883.1
XX
DT   24-SEP-2002 (Rel. 73, Created)
DT   24-SEP-2002 (Rel. 73, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate VNP-08 coat protein (cp) gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-837
RX   PUBMED; 12237441.
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   "On the evolution and molecular epidemiology of the potyvirus Papaya
RT   ringspot virus";
RL   J. Gen. Virol. 83(Pt 10):2575-2585(2002).
XX
RN   [2]
RP   1-837
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   ;
RL   Submitted (29-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   School of Life Sciences, Queensland University of Technology, 2 George St,
RL   Brisbane, Queensland 4000, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .837
FT                   /country="Viet Nam"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: P"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="VNP-08"
FT                   /specific_host="Carica papaya"
FT   CDS             <1. .837
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8BD54"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q8BD54"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="AAN17230.1"
FT                   /translation="GLNEKLKEKEKQKEGKDKQKDKINDEASDGNDVSTSTKTGERDRD
FT                   VNAGTSGTFTVPRIKSFTDKMILPRIKGKTVLNLNHLLQYNPQQIDISNTRATQSQFER
FT                   WYEGVRNDYGLNDSEMQVMLNGLMVWCIENGTSPDLSGVWVMMDGEAQVDYPIKPLVEH
FT                   ATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKTP
FT                   DRAREAHMQMKAAALRNASRRMFGMDGSVSYKEENTERHTVEDVNRDMHSLLGMRN"
XX
SQ   Sequence 837 BP; 285 A; 139 C; 206 G; 207 T; 0 other;

af506883 Length: 837  24-SEP-2002  Type: N  Check: 6558  ..

       1  ggtctgaatg agaagctcaa agaaaaagaa aagcagaaag aaggaaagga
      51  taaacaaaaa gataaaatca atgatgaagc tagtgacgga aacgatgtgt
     101  caactagcac aaaaactgga gagagagata gagatgtcaa tgccggaact
     151  agtggaactt tcactgttcc aaggataaag tcatttactg ataagatgat
     201  tttaccaaga attaaaggaa aaactgtcct taatttaaat catcttcttc
     251  agtataatcc gcaacaaatt gacatctcaa acactcgtgc cactcaatct
     301  caattcgaaa ggtggtatga gggagtgagg aatgattatg gtcttaatga
     351  tagcgaaatg caagtgatgt taaatggttt gatggtttgg tgtatcgaaa
     401  atggtacatc tccggattta tctggtgtct gggtaatgat ggatggggaa
     451  gcccaagttg attaccccat caaacctttg gttgagcacg caactccttc
     501  attcaggcaa atcatggctc acttcagtaa tgcggcagag gcatacattg
     551  caaagaggaa tgcgactgag aggtatatgc cgcggtatgg aatcaagagg
     601  aatttgactg acattagtct cgctagatat gctttcgatt tctatgaggt
     651  gaattcaaaa acacctgata gggctcgtga agctcatatg cagatgaagg
     701  ctgcagcttt acgcaatgct agtcgcagaa tgtttggaat ggatggcagt
     751  gtcagttaca aggaagaaaa tacggagaga cacacagtgg aagatgtcaa
     801  cagagacatg cactctctcc tgggtatgcg caattga