Sequence of DPV Rice stripe virus
Rice stripe virus isolate HZ possible replication protein NS3 and nucleocapsid protein CP genes, complete cds.
ACC No: AF508865
Dated: 2003-05-29 | Length: 2509 | CRC: 589694979
!!NA_SEQUENCE 1.0
ID AF508865 standard; genomic RNA; VRL; 2509 BP.
XX
AC AF508865;
XX
SV AF508865.1
XX
DT 09-JUN-2002 (Rel. 72, Created)
DT 29-MAY-2003 (Rel. 75, Last updated, Version 2)
XX
DE Rice stripe virus isolate HZ possible replication protein NS3 and
DE nucleocapsid protein CP genes, complete cds.
XX
KW .
XX
OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
XX
RN [1]
RP 1-2509
RA Wei T.Y., Wang H., Lin H.X., Wu Z.J., Lin Q.Y., Xie L.H.;
RT ;
RL Submitted (02-MAY-2002) to the EMBL/GenBank/DDBJ databases.
RL Fujian Agricultural and Forestry University, Plant Protection, Institute of
RL Plant Virology, Fuzhou, Fujian 350002, P.R. China
XX
DR GOA; Q8JRD1.
DR SPTREMBL; Q8JJG3; Q8JJG3.
DR SPTREMBL; Q8JRD1; Q8JRD1.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2509
FT /country="China"
FT /db_xref="taxon:12331"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Rice stripe virus"
FT /isolate="HZ"
FT /segment="RNA 3"
FT CDS 66. .701
FT /codon_start=1
FT /db_xref="SPTREMBL:Q8JJG3"
FT /product="possible replication protein NS3"
FT /protein_id="AAM49584.1"
FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD
FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY
FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN
FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSPAGL"
FT CDS complement(1449. .2417)
FT /codon_start=1
FT /db_xref="GOA:Q8JRD1"
FT /db_xref="SPTREMBL:Q8JRD1"
FT /product="nucleocapsid protein CP"
FT /protein_id="AAM49585.1"
FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG
FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR
FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD"
XX
SQ Sequence 2509 BP; 762 A; 531 C; 433 G; 783 T; 0 other;
AF508865 Length: 2509 September 11, 2003 13:48 Type: N Check: 4724 ..
1 acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc
51 cgacatcatc taagtatgaa cgtgttcaca tcgtctgtgg gttctgtgga
101 atttgatcat cctctgcttt tggagaatga tctgaccagt ttgagcataa
151 actgtgatga tgtccattgt tcttcaagag ccttatgtta tatatatgac
201 attcattcat ctaggcaccc ttccattgat gagcatcagt ttctgaggct
251 tcttcatggc cctgatgatg ctgtcactct aggctccttt ttgaaaactc
301 ttatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt
351 cctactataa tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa
401 gccaagaccc ccatcaacaa attgctggac atgcagaatg tccaaagaca
451 atttgccctt taccgttcct agtgtcaagg gatttcctcc agatgcagag
501 ctctacattg tgccaatatc tgaccatgat ggaaagcctg tcaaatttga
551 caataggaag actctatata gatcacctag taagaaaagg cataagtatg
601 tcatttcttc tgataaacca cctcttagtg cacgttatgt taagtacgtt
651 gattctagtg cactagaacc ctcaccaggc agctctccag ctgggctgta
701 gagaaataaa gaaaaagaga aggaaattaa aacaaaaacc aaaaaaacaa
751 caaaaaaatc ttaaaaataa aaaataaaaa ataaaaacac aaaaaacaaa
801 aaaactaaaa aaactaaaaa aacttgaaaa catcgtaatc taaaaaccta
851 cacaccactg gctatctagt ggactctagt tggtagagaa agctatgctt
901 ttgcctaaag ccatgattgg ccaatcctta aaatgtgcta agcacattat
951 ccgaggatgt ctcggatgtt tttttaccta acctaatttt tttgtatttt
1001 tatatatttt ttgatttttt tgttttttat atacatattt ttgatttttt
1051 tgtttttttg gttttttcat tttttatttt aatatatatt cttctagtta
1101 ctacatttat atattcactt agtcatatac tttacatata tagtatatct
1151 cacaaaatag agctatacaa taaaactaat atcactatac tacaagctta
1201 catcttaata tttagataga cttatcaaac taaagactct attggagagt
1251 gagtgataat aatagcaata tatcatacac aaaacctaaa agcacacaga
1301 taaaataact tatgttatat aatttaaaac taaaatagac atgttattta
1351 taccatatta acttacactt aaaggaacaa cacactgttt gaagacatgc
1401 gtcttctagg gagatatgag acccccaaca actgctgacc agttcagtct
1451 agtcatctgc accttctgcc tcgtcctcga agaactcctt caccaacccg
1501 ctgacttcag atgctgtctt tgaagtgttc tcagcaagga tcttcatcag
1551 tttgctctgt tgagccaagt acagccttgt ctgattccca taagtgctga
1601 tcgtattgac agacatacca gccagcgcat cgaagattgt ggtcttcact
1651 ttcccattgg tgatgaattc atctaagacc ttctttctgc catcttcctt
1701 cttcttgtca gccaggttct ttgacttgca tgtgatgacc aggagaccag
1751 ttgtgtactt catcatgtct atgtcttttg tcagaccacg ctccttcttc
1801 ttaccctctg gcatggtctt cttggttatt tggaaggagt gaatgatgtg
1851 cacaacaaac aaaatgtgac ttagggagtg agttgtgcag taaggagctg
1901 tttcactctc cagtttgata tattgtggaa catagtccca cagtaagttg
1951 tcacatcctg ttagtcccag gtcagaggag tccacagcca tcttaacacc
2001 agaaatttgt ctcacaactt catgtgagac atttgggaat agctgagcca
2051 gccttccaag tgtgatagca ttggcatttg tccccaccga ggacactatc
2101 ccatacctcg acaccaaggt cgaagcctct gtgcttccag ccgccacttt
2151 cactttctta gtgacatctc tcacaaagcc agtgcctctc acatatctca
2201 tggtgatgca catagtcata tccttggcca gtgtgtcacc acctttgtcc
2251 ttcaatatgc caatcagagt tgcagcatca tagcctgcat actctatctg
2301 accagcaaag gtcacaacat cagctttatg agcagtcagg taagacaacg
2351 catctttgga gatgtcattg attgccttct gcaaatcagc tagagtggct
2401 ggcttgttgg tacccattgt agcaagaggt actggaggaa tggttgcggc
2451 ttagatgaaa tttggaatgt aaaagcaaaa tcgaaaattt tattacccag
2501 actttgtgt