Sequence of DPV Rice stripe virus
Rice stripe virus isolate YL possible replication protein NS3 and nucleocapsid protein CP genes, complete cds.
ACC No: AF508913
Dated: 2003-05-29 | Length: 2489 | CRC: 1355989257
!!NA_SEQUENCE 1.0
ID AF508913 standard; genomic RNA; VRL; 2489 BP.
XX
AC AF508913;
XX
SV AF508913.1
XX
DT 09-JUN-2002 (Rel. 72, Created)
DT 29-MAY-2003 (Rel. 75, Last updated, Version 2)
XX
DE Rice stripe virus isolate YL possible replication protein NS3 and
DE nucleocapsid protein CP genes, complete cds.
XX
KW .
XX
OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
XX
RN [1]
RP 1-2489
RA Wei T.Y., Wang H., Lin H.X., Wu Z.Z., Lin Q.Y., Xie L.H.;
RT ;
RL Submitted (03-MAY-2002) to the EMBL/GenBank/DDBJ databases.
RL Fujian Agricultural and Forestry University, The Institute of Plant
RL Virology, Fuzhou, Fujian 350002, China
XX
DR GOA; Q8JRC8.
DR SPTREMBL; Q8JRC8; Q8JRC8.
DR SPTREMBL; Q8JRC9; Q8JRC9.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2489
FT /db_xref="taxon:12331"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Rice stripe virus"
FT /isolate="YL"
FT /segment="3"
FT CDS 66. .701
FT /codon_start=1
FT /db_xref="SPTREMBL:Q8JRC9"
FT /product="possible replication protein NS3"
FT /protein_id="AAM49588.1"
FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD
FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY
FT VKFFTEVKPRPPPTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN
FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSPAVL"
FT CDS complement(1429. .2397)
FT /codon_start=1
FT /db_xref="GOA:Q8JRC8"
FT /db_xref="SPTREMBL:Q8JRC8"
FT /product="nucleocapsid protein CP"
FT /protein_id="AAM49589.1"
FT /translation="MGTNKPATLADLQKAINDISKDALNYLTAHKADVVTFAGQIEYAG
FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT YGIVSSVGSNANAITLGRLAQLFPNVSHEVVRQISGVKRAVDSSDLGLTGCDNLLWDYV
FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT TGLLVITCKSKNLIDKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTK
FT LYLAQQSKLMKILAENTSKTATEVSGLVKDFFEDEAEGADD"
XX
SQ Sequence 2489 BP; 750 A; 540 C; 431 G; 768 T; 0 other;
AF508913 Length: 2489 September 11, 2003 13:48 Type: N Check: 4717 ..
1 acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc
51 cgacatcatc taagtatgaa cgtgttcaca tcgtctgtgg gttctgtgga
101 atttgatcat cctctgcttt tggagaatga tctgaccagt ttgagcataa
151 actgtgatga tgtccattgt tcttcaagag ccttatgtta catatatgac
201 attcattcat ctaggcaccc ctccattgat gagcatcagt ttctgaggct
251 tcttcatggc cctgatgatg ctgtcactct aggctccttc ttgaaaactc
301 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt
351 cctactataa tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa
401 gccaagaccc ccaccaacaa attgctggac atgcagaatg tccaaagaca
451 atttgccctt tactgttcct agtgtcaagg gatttcctcc agatgcagag
501 ctctacattg tgccaatatc tgatcatgat ggaaagcctg tcaagtttga
551 caataggaag actctatata gatcacctag taagaaaagg cataagtatg
601 tcatttcttc tgataaacca cctcttagtg cacgttatgt taagtacgtt
651 gattctagtg cactagaacc ctcaccaggc agctctccag ctgtgctgta
701 gagaaataaa gaagagagag aggaaattaa aacaaaaaaa caaaaaaaca
751 aaaaaacaac aaaaaaatct taaaaaataa aaaactcaaa aaaactaaaa
801 aactggaaaa caccataatc taaaaacata cacaccactg gctgtctggt
851 ggactctagt tggtagagaa agctatgctt ttgcctaaag ccatgattgg
901 ccaatcctta aaatgtgcta agcacattat ccgaggatgt ctcggatgtt
951 tttttaccta acctaatttt tttgtatttt tttatgtttt ttgatttttt
1001 tgttttttat atacatattt ttgatttttt tgtctttttg attttttcat
1051 ttttattctt aatatatatc cttctaggta ctacatttac atatttactt
1101 agtcatatac ttacatatat agtatatatc ataaaataga gcaatacaat
1151 aaacctaata tcactatatt acaagcttac atcttaaaat ttagatagac
1201 ttatcaaact aaagactcta ttagagagtg agcaataata atagcactac
1251 atcatacaca aagcctaaca ccacacagat aaaataactt ataggatata
1301 atcaaaaact aaaatataca tgttatatat acacatatta ccttacactt
1351 aaagaaacaa cacactgttt gaagacatgc gtcttctagg gagatatgag
1401 atccccaaca actgctgacc cgctctgtct agtcatctgc accttctgcc
1451 tcatcctcga agaaatcctt caccaacccg ctgacttctg ttgctgtctt
1501 tgaagtattc tcagcaagga tcttcatcag cttgctctgt tgagccaagt
1551 acagcttggt ctggttccca tatgtactga tcgtgttgac agacatacca
1601 gccagtgcat cgaagattgt ggtcttcact ttcccattgg tgatgaattc
1651 atccaagacc ttctttctac catcctcctt cttcttgtca atcaagttct
1701 ttgacttgca tgtgatgacc aggagaccag ttgtgtactt catcatgtct
1751 atgtcctttg tcagaccacg ctccttcttc ttaccctctg gcatggtctt
1801 tttagttatt tggaaggagt gaatgatgtg cacaacaaac aagatgtgac
1851 taagggagtg agttgtgcag tagggggctg tttcactctc cagtttgatg
1901 tattgtggaa catagtccca cagtaggttg tcacatcctg tcaaccccag
1951 atcagaagag tccacagccc tcttaacacc agaaatttgt cgcacaactt
2001 catgtgagac atttgggaat agctgagcta acctcccaag tgtgatggca
2051 ttggcatttg atcccacaga ggacactatc ccataccttg acaccaaggt
2101 tgaagcctca gtgcttccag ccgccacttt caccttcttg gtgacatctc
2151 tcacaaagcc agtgcctctc acatacctca tggtgatgca catagtcata
2201 tccttggcca atgtgtcacc acctttgtcc ttcaatatgc caatcagagt
2251 tgcagcatca tagcctgcat actctatctg accagcaaaa gtcacaacat
2301 cagctttatg agcagtcagg taattcaacg catcttttga gatgtcatta
2351 attgccttct gcaaatcagc tagagtggct ggcttgttgg tacccattgt
2401 agcaagaggt actggaggaa tggttgcggc ttagatgaaa tttggaatgt
2451 aaaagcaaaa tcgaaaattt tattacccag actttgtgt