Sequence of DPV Rice grassy stunt virus
Rice grassy stunt virus segment RNA1, complete sequence.
ACC No: AF509470
Dated: 2003-05-29 | Length: 9764 | CRC: 119502355
!!NA_SEQUENCE 1.0
ID AF509470 standard; genomic RNA; VRL; 9764 BP.
XX
AC AF509470;
XX
SV AF509470.1
XX
DT 12-AUG-2002 (Rel. 72, Created)
DT 29-MAY-2003 (Rel. 75, Last updated, Version 2)
XX
DE Rice grassy stunt virus segment RNA1, complete sequence.
XX
KW .
XX
OS Rice grassy stunt virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
XX
RN [1]
RP 1-9764
RA Lin L.M., Wu Z.J., Lin Q.Y., Xie L.H.;
RT "Sequence analysis of RNA1 of rice grassy stunt virus shaxian isolate";
RL Unpublished.
XX
RN [2]
RP 1-9764
RA Lin L.M., Wu Z.J., Lin Q.Y., Xie L.H.;
RT ;
RL Submitted (04-MAY-2002) to the EMBL/GenBank/DDBJ databases.
RL Plant Protection, Institute of Plant Virology, Fujian Agriculture and
RL Forestry University, Fuzhou, Fujian 350002, China
XX
DR SPTREMBL; O89162; O89162.
XX
FH Key Location/Qualifiers
FH
FT source 1. .9764
FT /country="China"
FT /db_xref="taxon:66266"
FT /mol_type="genomic RNA"
FT /organism="Rice grassy stunt virus"
FT /isolate="shaxian"
FT /lab_host="Oriza sativa"
FT /segment="RNA1"
FT CDS 166. .666
FT /codon_start=1
FT /db_xref="SPTREMBL:O89162"
FT /product="NS1"
FT /protein_id="AAM77611.1"
FT /translation="MGYYHSKTDNPKLITTKIRKYKVFSIPVKTQVIIITGSTLSLDFF
FT TLQTWIHLQEGFILEMGVRSTNGVLKIVNTICQENGKIERDRWDWYGCADSGLRKVHYD
FT EGIARSERTSIRVDIRGTLFVLTVDGHILGVYDVNSCINAINIGLEVLPNSDNTLDFDL
FT IYH"
FT misc_feature complement(775. .9551)
FT /note="nonfunctional RNA polymerase due to mutation"
XX
SQ Sequence 9764 BP; 2816 A; 2003 C; 1580 G; 3365 T; 0 other;
AF509470 Length: 9764 September 11, 2003 13:48 Type: N Check: 6451 ..
1 acacaaagtc ctggacaaca aaaacaaaaa aactctttca tcaatatttc
51 gtttctctta agtattaact ttaaatataa ttataaagat tgtgtattct
101 tcaacgacag agtagttctc tatctacttt ataacagttt tattaaagtt
151 tgttcttgcg atagtatggg ttactatcac tccaagactg ataatccaaa
201 attgataact acaaaaataa ggaagtacaa agtattctcg attcctgtta
251 aaactcaggt tatcatcatt actggatcga ctctctcatt agacttcttt
301 acactacaaa catggataca cctccaagag ggttttatct tagaaatggg
351 tgttagatcc acaaatggtg tgctgaaaat agttaacact atttgccaag
401 agaatgggaa gatagagcgt gataggtggg attggtacgg ttgtgcggat
451 agtggtttgc gtaaggttca ttatgatgaa gggatagcta gatctgagag
501 aacaagcata agggttgata ttcgaggtac cttatttgta ttgactgtag
551 atgggcacat acttggtgtg tatgatgtta atagctgtat caatgccata
601 aatattggtt tggaagtttt gccaaattca gataacacgc tggattttga
651 tttaatatat cactaggaaa atacttatat taaaggtaga tattaattca
701 atatcggata tgggccgaag cccatatatc caatcaaatg tccaatattc
751 tctagcataa tccaaacaca caaactagaa catgtatgac ctacctctac
801 ccctccttcc tctccctctt gaagatggcg ggttataagt aggaaactgt
851 gaatcaggca catcatacat gaattgtaga atccttttgt agtgcattga
901 actcgctggc agtttctgtc gactttcacc tttaattata ttcatagtta
951 atctcaaatc atctgttccc atgaatgtat ccattttcct aactgaagat
1001 aagaacattt tatgaaagag agaaacatta actgcctctt tctccatttg
1051 gatttcgtct tgctcctcag caagatctct agccaactca tacaggtgtt
1101 ccaagtcttc atcttttatt gtcatatcaa tagttttata tgcttggcta
1151 atcctggtta atagtgactc catactttcc aactcttcac aaacttcctt
1201 gtcttcttga atactctcag gataatcatg agctaaccta tctcttgctg
1251 ccttgcttag cttagatagt tgaactatct tttggtagcc taatgatgat
1301 tcaaaaagtt ctctgcacca actcttcagt cttttctcat caactagatc
1351 tggaaactga cccaaattca tctgtgtgaa taaactagtg ggtgctctct
1401 ggtctctcca caatatccag tctttaagcc aatcatccat tttgagtctt
1451 tttatcatat tcacattctg ctgtgactgt agctcactgg tgatcacatc
1501 tttctttgaa agatgaacag tcaacactgt tgtgtaaggt gctctctcac
1551 cagtgcactc ttgaagcaat cttatggagt gatcagttat gtcaatacag
1601 aatgagtctg acaaaaatgg ctggtgaatt atcaacttgg gatctagaac
1651 tattggacat ccatctctat cactcatttg tacccttcga aattcaaaca
1701 tcctcccaag catttcacag tctctgttac catatgccat agtgtagtgg
1751 gaatttccca ctcgatgttc tcttgaccat tccttcaatg attgtatagt
1801 atctgatagg tgcattgcac tagatagact aacacttttg atgtaagact
1851 ccatattttg atcagagttt acttcaatct gaactgctac atcatgtaga
1901 taacctctcc aaacacccgg tccgaagtac ttcttttcct ccctgttata
1951 tgattgcttt tggacgtagc cacctagtag acctagatta ccaattctta
2001 tcttctgcat aatgtctctc ctacagtatc tagcttcatc cctcagtttc
2051 attaggtcat aactactctt aacaatcctg tgaccaatca ttgttaacca
2101 gttcctcgtt ggatcattag ctgcttctgc ttttagtaat tctaagctta
2151 gcagcatttt ttgtgttggt tttcttttgt tatactgttg atatgcatcc
2201 tctagaaccc tatcacagta tatgtactga caatatgctc ttctagcaga
2251 agcactgaga ctatttatag tgagatcttc aaagtttttc tccagctcct
2301 catatcccat accactgtca agcaactctt tctccactaa ttgccccatt
2351 cttattaagg acctgaaacc accaagagaa aggttttgat caaactcgcc
2401 aagatgatgt tcaaccaaat tcactgcatc ctgagtgttg tagtctccag
2451 agaacttcag gtcaggatct gttctcaaga acatttgtat tatagccagc
2501 ttgttccttt tggaacctaa catagatgtt gagtattcta gatccttatt
2551 atcaactatg agatctgtca ttgcaactag cttctcctca tattttaaag
2601 gtgattggtt taacattgtt aagttagata gtagagattt ataatcctca
2651 gttttttctt tctttatcac acctgtaaaa cctccagaga aaactattcc
2701 attggagaaa ttatttctga taagtgtcat taggttgacg tttcctgagg
2751 aagccttgcc catagttcct acaaaatgca gaactctccc tttcgtgctc
2801 actctagata ggtagttatt aagctgaatg tagctaacaa atggtgatcc
2851 tactaaggtg tctccgattg tgtctctgag ccagagccag gtctctttgt
2901 attttttcca aactatcttt aatgttttgg ggtgtgctgg tacatccttt
2951 tctccgaacc atatgaactt tgcaacagaa tacactgaga atgttgaact
3001 ctgttctgtt ccagtcaatt gaatctgtga tctcaccctt ctcctttgat
3051 tgattccact cctagccata ttgagattta ggctggagag attggattct
3101 atttctaaat aatccgtctc ttctgggaac aatgactgta tctctttgta
3151 tgaatcttgt atttgtcttc tatgttcatc agacatactg ctagactctt
3201 gtcttctaac taataagtaa tttggattta gcatgaagta cagattctca
3251 gaatttgtca ggcacttaaa ggtgtgacat aatttaaagc ttgcttcagg
3301 gtctctgctt atatacacgt gtatgttaat tccgaatcct ttggacaatt
3351 tatgcattaa cttattttca tcaatgaacc agtcattcag tttagtatca
3401 tcaagagcca atccaaactt ttcagacaac agcctctctg attgttccat
3451 ggttaggtca gttaaaactg aaaccatctt tataacaccc tctctcagtc
3501 cttctactga ataaaaatca tcactgggct cttctgttaa agattggacg
3551 ccaggaatct gagcttcttt ctggccaatc ttacttacca cattggagtt
3601 gctgtttagt aattctctga aagtagaggt ctttctcttc tcatctgttt
3651 ctacaccagc agacatgctg aacaatacat ttctagatat aaaatacact
3701 gaggatgcaa ctcttcttcc aagagtattt gtctttgcta agctttgcat
3751 aacacctggg cttctcatct tgatagcaat tttctgctgc atttcttctg
3801 cattcttagc atggaaaaat agtattctag gattttgctc gatagaatca
3851 aagatatcat ctgttaagtg catcctatca cacatcttca tccatttggt
3901 cttgttgccg aatccaacag ttgtagtcct agagagtact cctagattag
3951 caatatcagg tgtcatcttc ctctttgaat tttcagtatt gaattccaga
4001 tttagcatgt ctgcatattt cactgataag aatgactgct tgcatgtttt
4051 ccatagatta tatccaaacc ccatcaaccc agatgccatt gggtggtcca
4101 ttagaaagta tccaagagct ggatcttttg acaacttaat catcgaacag
4151 tagctgcccc atagaggtga tactgaagac ccatacatcc tatagtgtaa
4201 cattgcatga gcaacttgag ttacgaaagt gtgatagaac gtccctccac
4251 cttccaatat atccttaaga gtgtttgaca tctcctcttg actagcgatc
4301 aaggtttctt gctcagagac attcagtgca gcattcaccc atctaattgt
4351 tggtctatgg gtgtctcctg caaagaaaaa ctcactatta aattccatca
4401 taaatattgt tccggttgtt gattttatag atttgtagat acctaacata
4451 tccccatagt attctttcag ggagaatgct ctatctacca acagaagcat
4501 tgcaaatgtt tgcctgtcat tcatagattt agttgagaat gatatcatca
4551 ttgagctatc atctgatgac tccatgcaat ctataataac attagactca
4601 ttatctggtt gtattatcct agccatctgt gggagttgtt tcttttgcct
4651 ctctgccaaa tcctctagga atatagcatg aaacagagag ctgatataat
4701 gcagtatacc ttgcataaat cctgattctg tttctatata agtcatacct
4751 cttgtcatcc agggagcaac ctctcttcct ttaaaaacct catgaacttt
4801 cttgaccttt tcatcagtag tatttagtac atcatttgca caaaagagtc
4851 taagtaagtc atcacccaag aataatcttt tgtgaaacca taattgtaat
4901 gccctaacta tgaagccgtg ccagaatttt ggtagaatcc taactaatat
4951 ggttataaac tttgagacat ggtgaccttg attccatttt gatgcatcat
5001 cactggtaca cacagtaaag tagctatcac caaattcctt tcttgctgca
5051 atattgtgtt tatttggaat ttgaaatttg ttcttaggat gggtcatagt
5101 ctcactaggg acgactgata atatagctct ggcaagatct tcaacacatt
5151 tttgtacaat cctctcatat atatttaaga cataaatctc cctaagccct
5201 ccatgctggt tcttcctgaa aatacacaca tgtaggcaag cattcttttc
5251 aacctcctcc agagactctt tgagaagatc aacaactaac ctatactttt
5301 cattaggatc ctttttagtt aagatagttt gtattttttc tataactttc
5351 gacctaccat agtttctcct gttagattct gatttaggta gatcttcgtt
5401 aacggtctgc ggtctacttc ttttattttc attaggtctg tactcatagt
5451 actcagccga aaaattggat gatgctttta gggtcacaaa agactctaaa
5501 aactcatgtg acagatactc tagacataaa gtgctcaggt aatccttagg
5551 atcactaact cctgtctcgc ttttcaatct tcccagaaaa ctatcacaca
5601 tccttttaac cagagatata gaatacatgt gggtactaca ctgatcaact
5651 ggagggtctt ctaatcccaa atacttctta tcttcacctc tgggcagctt
5701 gtcctcatac cctaatatct tagatatgag ttgccctgat gcattatctt
5751 ctggatcctc atctttgttc ttgagatacc ctaaatacat gctacttagc
5801 attacatcat gatttggaaa attggacagt gagccatttt cagttacaaa
5851 gggatttttt atgttatacc atctcctcat tggtccactg ttgtccaatc
5901 taatgggagt ctctgtgtag cattccatca atttaatggc agactttatg
5951 tagaatactt ccaatctaga tcttggtatt gttgatagtt tttcaaacat
6001 cttatgaggt ttaggccagt taggagtctc cacaaatgcc tccatatgta
6051 tgaatcttgt actagtgatg acttcctcag tctggtgctt atcatttagg
6101 agtaccaata aacagttcgc ccacatcttg agataatcag agttgaaatc
6151 ttcatctggt acactggaga taccaatatt tggtgggata ttatattgct
6201 ctctccagaa agcatataaa ctcaacatta gagattcaca tctagtccaa
6251 ttgaccagtt tagaatagtt cactgatatg aaatcagtgt agaggaacct
6301 atctcctagt tttgatactt tcttgaaagt agtgtttata attttgctta
6351 actcctgatc ctctctaaaa agtaaagaaa agaaaacttt accatcactc
6401 ccagttgatt tgatgagaac gtacacttgg aaatccctca atcttttcac
6451 aataaactct cttggttgac agttctgctt gacagaaatt gatagttcaa
6501 cagccaaatc tgatacaaac ttagtgaata ggtatgcctt gctcttgaga
6551 tatgtgtcta aggactccaa cagtctagat tgagaagaac aaccatgaat
6601 cttaagtgaa tcacttatta ggtctaacac actattatct aattcttgat
6651 catgaggtgt aaacaattgg agacactctt catttataaa cctctcaatg
6701 tcatcagtgg atgtgaataa ggagaagggt ttctttgact catttctgta
6751 agccagtacc tcaggatcct tactatattt cttaccattt attcctatct
6801 ttgctagatc tatcctatca tccatgtcaa acaccatcga aattctgttg
6851 aatttattcc taatcttttt gagatcatcc tccatttgag tggaaagagt
6901 tggttcttcc attgcaagag agaaatccga tttaccatct tcaatctcat
6951 atagataatg catgaaacca caaatgcctt gtttccaagc ttcttctgtt
7001 gaactcattg aagaagtact aatgatttca tcaactacat ttctgacctc
7051 ctcatgtgtg ttgcttaccc ccacaactcg cacaatcttg ggaactaaca
7101 ttggaagctg aacagatgcc ttgttggatg ttctgtaagc ttcttcattt
7151 tttataaagt tggattcata ttccattttc cttgattgca tcatcaatat
7201 ggattcattt cttatttcat ctctataggc tcttatgttt acatcattaa
7251 gatgcttcag tttctccatc ttcctcatgg atttattgga gacgtaagta
7301 tcaagtttgt gtaagtaatc ataatcttca gattctagtg tcccaacagc
7351 tttagtataa tgagccatgg tatatggttt aataaattta ctgggatcca
7401 attctccatc ttccttatgt attcttattc cttctataat cttctttata
7451 gacgagatct ccattttcat cgcttggtca gcctttatgt catattctaa
7501 attttgctca atttgtaggg ctatctgtct tgctagttta tagctataga
7551 tcaattcatc cattgtctct gtggggagat tcatcaggtt agtttgaacg
7601 ccattttgac acactacgat tatatagtaa tctatgctaa tcttgaagtg
7651 gtctctccta ttgtgaatag catctctgta cttgagagtt ttatcttccc
7701 aacctctgct tcttacatct ggtctcatat tagtgtttct agtagtgaac
7751 tcaataacac tgtaatgttt ttccccatgt tttattatca tgtcaggggt
7801 tttattattg tctggatctc caggtataaa gagaccagca tcagtgaaag
7851 agacatctag attatcacca aacagggcaa aagtgaagtc atggacaatg
7901 tttttcactg tgcttatttt gcatgagtaa gctctgttgt cgggtattga
7951 aggaaagtca tgatacttcc tattaccaaa tctattttca aagctgatca
8001 caatttcagt ttcatcagga gaaacaatct cactagtttc tggcactttc
8051 aaccttggat gcatctcata caatccatac atagattcat cataaccact
8101 atgttcagga tttgttaact tctgtatatc atcatcgtaa ctcgtgaaca
8151 ggaattctgc tgttttcctg ctgaagctaa gagtggggaa atccttatca
8201 tattggtcat ctctgagaac tgtcactggc aaaccacttt ttacagcacc
8251 ccataggttt ccttcagagt ccaataaaaa atgtttctgc ttcttagtaa
8301 gttcaggatt ctgaccccag tatttataaa ttttggtttt aatatcgtcc
8351 caacattgac catatcatta tccactagga gtatagtgag cagattttcc
8401 aactcttttg ataggaaaca aagtgacaac aatttattct tgttcaaaaa
8451 cggttcatag tccacttctc tgcgctgtgg aaatattgtt ttacacttct
8501 caatcatttt cagtttgtta ctataccaat tactaggttg tacaaatgac
8551 tgtgttagtt gtcttattag tgactccaag tcatgcactt tttctaacac
8601 ctgataattc tgatcaactt caagtagtcc tgaaatcttt aggaaaaacc
8651 acttgttcgt tgagccatca taaataagct ctaataagcc attccctggc
8701 cctacacact taaaaccacc ttctaaacta tacaagttct catgatatga
8751 caacaagcga acttctatag tcattcccaa attgagtgac aacattgcta
8801 cctcttgctg cctagaatac ttcttcagtc ttacaatgga agaaaataag
8851 ttgcagttaa attgaggcac ttgctgatgt aaattacttt cagcaagact
8901 agcaagagaa ttgtaccact ggcctctctc agtgaaaaca tctcccaatg
8951 gttttgtctc aaccttcagc tcaatcatgc taggtagatc tatgtcatca
9001 tctaaactac ctagataccc acctaatact gaagatagct caaagtagtc
9051 atatgttggg tcatctatgg cttcatagtg cctactttcc agtttcatgt
9101 gaatcatcaa tttactccta tcaccgaatg ttttacaatg gctgtcccat
9151 gtttcatcat gaatacatat acatatgtct agacatattg aaacatgaat
9201 gattgaataa taagtagcca tataagaatc atttggatcc agttctccta
9251 acaactcctt caactcagaa gctgtccata tactcatggc atagtactga
9301 ttcctcagct tgttcatcac cttgatgtaa tccttactct ccactcttaa
9351 acataaacat aaggcattga agaaacattt tagatttgga gagggagtcg
9401 gtattgtttc agcaccttta tagaagcaat ccaccaggct accgttgata
9451 tcatattcga catcattgta cttaaacctc tctacaccta ctatttcatt
9501 gttcatatta tgtaagtagg aaatattaga gaattgacag tttgtattca
9551 tgttagctag tgagaggtat acaacaatga caaaaccaac cagatgatat
9601 ggtgtggaca atattctaga gatattatta taatgtaatt aagaataaga
9651 aattaactaa taaataaatg caataattaa taaaattata ttatattact
9701 gaaaaagtat tccctgaata ttatgctatt tgttcgtttt tctaattttg
9751 tccagacttt gtgt