Sequence of DPV Rice grassy stunt virus
Rice grassy stunt virus RNA2, complete sequence.
ACC No: AF511072
Dated: 2003-05-29 | Length: 4071 | CRC: 1583309090
!!NA_SEQUENCE 1.0
ID AF511072 standard; genomic RNA; VRL; 4071 BP.
XX
AC AF511072;
XX
SV AF511072.1
XX
DT 03-JUN-2002 (Rel. 72, Created)
DT 29-MAY-2003 (Rel. 75, Last updated, Version 2)
XX
DE Rice grassy stunt virus RNA2, complete sequence.
XX
KW .
XX
OS Rice grassy stunt virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
XX
RN [1]
RP 1-4071
RA Lin L.M., Wu Z.J., Lin Q.Y., Xie L.H.;
RT "Comparison of sequences of RNAs of rice grassy stunt virus from China with
RT those of two isolates from Philippines";
RL Unpublished.
XX
RN [2]
RP 1-4071
RA Lin L.M., Wu Z.J., Lin Q.Y., Xie L.H.;
RT "Sequence analysis of RNA2 of rice grassy stunt virus Shaxian isolate";
RL Unpublished.
XX
RN [3]
RP 1-4071
RA Lin L.M., Wu Z.J., Lin Q.Y., Xie L.H.;
RT ;
RL Submitted (10-MAY-2002) to the EMBL/GenBank/DDBJ databases.
RL Plant Protection, Institute of Plant Virology, Fujian Agriculture and
RL Forestry University, Fuzhou, Fujian 350002, China
XX
DR SPTREMBL; Q8JR18; Q8JR18.
DR SPTREMBL; Q8JR19; Q8JR19.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4071
FT /country="China"
FT /db_xref="taxon:66266"
FT /mol_type="genomic RNA"
FT /organism="Rice grassy stunt virus"
FT /isolate="Shaxian"
FT /lab_host="Oryza sativa"
FT /segment="RNA2"
FT CDS 210. .812
FT /codon_start=1
FT /db_xref="SPTREMBL:Q8JR19"
FT /note="23.3K"
FT /product="NS2"
FT /protein_id="AAM44063.1"
FT /translation="MSISIPASEYQSSKTYSQLLMTFRDMVSEEQYEVIKERMVENNKH
FT YYALDKFSQGVYDIKDMQILVADLSWLCAFDKSSDQRTRETLVMISKCVLDIMLSLKPE
FT VSQTKCFVCDKKSTYETDNLSVARLDDVSNRFSGGSVHYMVKLKEHDKVGLMSYIHELK
FT KIGGYRGWYRDGGKLRHEYIVYTDAKPIMREKFAPVC"
FT CDS complement(1396. .3864)
FT /codon_start=1
FT /db_xref="SPTREMBL:Q8JR18"
FT /note="93.9K"
FT /product="NSvc2"
FT /protein_id="AAM44064.1"
FT /translation="MGLLVITFALALLELSETKSLYTQVIYHDEGDRITSSFSCNYYDC
FT NEGISICSRARYTSGYYLEKTGLNTAGLCRTDTTKCCGKMDKFSDNVILRSTSIRRVDD
FT IFINECNRWILRRHVKMTIKTTPIDTKDMDSRSLRKGTYDQFILSAESLEVCVHKNGEY
FT DSKIIVKCIDGILTSSEKNCKLWIDHTEFEFTDCTSRQLPLYTDVVNVAFNDVYRSVEC
FT EATNICSMYDRMDFWLRLKHWDCNKGFVWFLYSGIALIIITAIFTIIGLIKYYLIIVPT
FT NFVFRIMKKLIPNPFKLMKRRRSDYKAHELVRVKQDELSNLADENVKDVDSDKVKTLPT
FT RYRMRDGTYLTVGIILVFLPLVLGSCRDGVDSITSLSTCNSYACKSVTTINLKFRSMGD
FT ETCLSFKDANLKIRVLGISMRCNSRVIYYTRKYKYVITRDDYKCFTGPDCSLNPPKSIW
FT DDEEQYLHHDYCKYENVGVFSCGVPFIRSSHWQRMKVESGDKLICSTEECQEFQPYIVL
FT VITMGTNQTIAEISSSVYKGNGYTMTLDSTTPVLLPTKFVRCGSELFKVNFNDLGDLSD
FT DHYGSLQCPDHDSAYELSKKCEIKYQHIYEHTSNIMVDSGDSKLTGTNTTNNDLEHLEP
FT LFGGYQISTDQMWPITIQIKTLKELVQEHESDFVGSISKCSIKGVSRLIGGAIINLYIE
FT SERIGWGLLTCEDLSSFRFNVEGLGFQKFSKHISVYTHTSSDVKVNCNMTTGRGVRRVV
FT CETSLREHTIEVSSDKNNIENGMVQFRSDQPLVKFLIEFVEDNPKTSIVSASVVIMYVS
FT RILIGKVNNK"
XX
SQ Sequence 4071 BP; 1353 A; 738 C; 673 G; 1307 T; 0 other;
AF511072 Length: 4071 September 11, 2003 13:48 Type: N Check: 7560 ..
1 acacaaagtc ctgggcaaaa gaaaagcaaa ataaccaact atagattagc
51 caaaaccttt ttgtttaaac agttagtaat ttataagttt taatttataa
101 gtttgaattt ataagtttta attcataact tatgatttaa aatttataat
151 ttataacata ctaattaatc ttaagtatat tgtttttgat ttagtagagt
201 gtagcaaata tgtctatttc aataccagca agtgaatatc aaagtagcaa
251 gacttatagt caactactca tgacttttag agacatggtc tctgaagagc
301 agtatgaggt aatcaaagaa agaatggttg aaaacaataa gcattactat
351 gctctagata aattctcgca gggtgtttat gatataaaag acatgcagat
401 attagttgca gacttgtcat ggctttgtgc ttttgataaa tcttcagatc
451 aaagaactag agaaacattg gtaatgatta gcaagtgtgt tttagatatt
501 atgctgagcc tgaaacctga agtcagtcag acaaaatgct ttgtttgtga
551 caagaaatca acatatgaga ctgataattt atcagttgct aggcttgatg
601 atgttagcaa taggttctct ggtggatcag tgcactacat ggtgaagctc
651 aaagaacatg ataaggttgg actcatgtca tatatacatg aactgaagaa
701 gattggaggg taccgtggtt ggtacagaga tggtggcaaa ctaagacatg
751 aatatattgt ctatactgat gcaaaaccca taatgagaga gaagtttgca
801 ccagtctgct gagatgcaaa agagggtgaa ggaatactag taattgatag
851 aaaaacctaa aaaaacataa aagaagacaa aaaaacaaaa acaaaaacac
901 acaggaaaac aaaaaaacaa aaaaaagaaa aaagaaaaaa agagaagaag
951 aaaaaaacac aaaagccata agtgggacca atgtgaaaat gatggagaaa
1001 tatgagatga ataaagggaa gaaaggtagg taaagataaa aagagtgaaa
1051 atatgccatt taaagaagta gtaatatgag gaaaaaacac attgataata
1101 aaaaatgttt aaagtgaaat agcaaaatgt ccttcgggac atatccgaga
1151 tattatacac cggattcaca ccgaagtgtg actttctttt atctttggtg
1201 tctaagtttg gttctttcct tggttctttg tatgtctcag cacgctgtgg
1251 ctcccacatt ttttatgata tttccctctt cctgatattt attttcttca
1301 cgtcacatag tttctcatga tttcaatctc tccctcctga tcactgaatt
1351 acaatttatg ataactgctg gcatcttgtg gatagattta tttatttatt
1401 tattatttac tttcccaatg agaattctag agacatacat tattacaaca
1451 cttgcagaga ctatgctggt ctttgggttg tcttccacaa actcaattaa
1501 gaatttgaca agtggttgat ctgatctaaa ctgcaccatt ccattctcta
1551 tattgttctt atcggaggaa acttcaattg tgtgttccct aaggcttgtt
1601 tcacaaacca ctcttctcac tcctcttcct gttgtcatgt tgcaattgac
1651 tttaacatca ctacttgtgt gggtgtagac tgatatatgt tttgagaact
1701 tctgaaaccc taagccttca acattaaacc tgaatgatga tagatcctca
1751 caagtaagta atccccaacc aattctctca ctctcaatat aaagattgat
1801 tatggctcct ccaatcaacc tggaaacacc cttaatacta cacttcgata
1851 ttgaaccaac aaaatcactt tcatgctctt ggaccaattc ctttagtgtt
1901 ttgatctgta tggtgattgg ccacatttga tcagttgaga tttgataacc
1951 accaaacaaa ggttctagat gttccagatc attgttagtt gtattagttc
2001 ctgtaagttt gctatctcca ctatctacca taatattaga agtgtgttca
2051 taaatatgtt ggtacttgat ttcacacttc ttagataatt cataggctga
2101 atcgtggtca ggacactgaa gtgaaccgta atgatcatca ctcaagtcac
2151 ccaagtcgtt aaaattgact ttaaacaatt cactaccaca ccttacaaat
2201 tttgtaggta ataaaactgg agttgttgag tctaaagtca ttgtgtatcc
2251 attgcctttg taaactgagg aactaatctc tgctatggtt tgatttgtac
2301 ccatagtgat taccaagaca atgtatggtt ggaattcttg acattcttct
2351 gttgaacata ttaacttatc tccactctca actttcattc tctgccaatg
2401 gctagatctt atgaaaggaa ctccacagga aaagaccccc acattctcat
2451 acttgcaata atcatgatgt agatattgtt cctcatcatc ccagatgctc
2501 tttggaggat ttaagctaca atctggacca gtgaagcatt tataatcatc
2551 tcttgtaatg acatacttat actttctggt gtagtaaatc actcttgagt
2601 tacatctcat gctaatccct agaacacgta ttttgagatt agcatcttta
2651 aaagataaac aagtctcatc acccattgat ctaaacttca aatttatagt
2701 tgtgactgat ttgcatgcat aggaattgca agtactaaga gaggttatgc
2751 tatcaactcc atctctgcaa gaacctagaa cgaggggaag aaataccaaa
2801 ataattccga ctgttaaata tgtaccatct ctcatacgat acctagttgg
2851 taaagtttta accttatcag aatctacatc cttgacgttc tcatctgcta
2901 gattgcttaa ttcatcctgt ttcaccctta ctaactcatg agctttgtag
2951 tcagatctcc tccttttcat taatttgaag gggtttggta tcaatttctt
3001 cataatccta aagacaaaat ttgttggcac tattatcaag taatacttaa
3051 taagccctat tatggtgaaa attgctgtga ttatgattag tgcaattcct
3101 gagtaaagaa accagacaaa tcctttatta caatcccaat gttttagtct
3151 cagccaaaaa tccatcctat catacattga acaaatgttt gtcgcttcac
3201 actccacact acgataaaca tcattgaaag ctacattcac aacatctgtg
3251 tatagtggca gctgtcttga agtacaatca gtaaattcaa attcagtgtg
3301 gtctatccat agtttgcagt ttttctcaga acttgttagt ataccatcaa
3351 tgcacttcac tattatctta gaatcatatt ctccattttt gtgaacacac
3401 acttctaagg attcagcaga aagtataaac tgatcataag tcccttttct
3451 caaagatctt gagtccatat ccttcgtatc aattggtgtt gtcttaatcg
3501 tcattttcac atgccttctc agtatccacc tgttacactc attaatgaag
3551 atatcatcaa ccctgcgtat agatgttgat ctcagtatta cattgtcgct
3601 aaacttatcc atcttaccac agcactttgt agtatctgtt ctacacaaac
3651 cagctgtgtt tagtcctgtt ttctccaaat agtatccaga agtatacctg
3701 gctctggagc aaatagaaat tccttcatta cagtcataat aattgcagct
3751 aaatgatgaa gtgatcctat caccttcatc atggtagata acttgtgtgt
3801 acagagactt ggtttcggat agctctagca aagctagagc aaatgtgatc
3851 acaagcaacc ccattcctat acaggaacaa atggtctatt ataaccaatt
3901 aatgggtggt gaatgtcact aatagaccac tggttgttag ttgtgaaaac
3951 gattctgatt gaagttgaat aaaaaatcct cataaatgaa acaaataagc
4001 aagtataaaa caaaggtctt ccttgacttt aagaaatgtg tttgttttac
4051 aaatatgccc agactttgtg t