Sequence of DPV Flexal virus
Flexal virus strain BeAn 293022 glycoprotein precursor and nucleocapsid protein genes, complete cds.
ACC No: AF512831
Dated: 2008-09-13 | Length: 3410 | CRC: -1897204877
ID AF512831; SV 1; linear; genomic RNA; STD; VRL; 3410 BP.
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AC AF512831;
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DT 04-OCT-2002 (Rel. 73, Created)
DT 13-SEP-2008 (Rel. 97, Last updated, Version 5)
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DE Flexal virus strain BeAn 293022 glycoprotein precursor and nucleocapsid
DE protein genes, complete cds.
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KW .
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OS Flexal virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
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RN [1]
RP 1-3410
RX DOI; 10.1016/S0006-291X(02)02053-3.
RX PUBMED; 12207889.
RA Charrel R.N., Feldmann H., Fulhorst C.F., Khelifa R., de Chesse R.,
RA de Lamballerie X.;
RT "Phylogeny of New World arenaviruses based on the complete coding sequences
RT of the small genomic segment identified an evolutionary lineage produced by
RT intrasegmental recombination";
RL Biochem. Biophys. Res. Commun. 296(5):1118-1124(2002).
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RN [2]
RP 1-3410
RX DOI; 10.1016/j.mib.2008.06.001.
RX PUBMED; 18602020.
RA Charrel R.N., de Lamballerie X., Emonet S.;
RT "Phylogeny of the genus Arenavirus";
RL Curr. Opin. Microbiol. 11(4):362-368(2008).
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RN [3]
RP 1-3410
RA Charrel R.N., de Chesse R., de Lamballerie X.;
RT ;
RL Submitted (16-MAY-2002) to the EMBL/GenBank/DDBJ databases.
RL Unite des Virus Emergents (EA3292, IRD UR034, IFR48), Universite de la
RL Mediterranee, 27 blvd Jean Moulin, Marseille 13005, France
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FH Key Location/Qualifiers
FH
FT source 1. .3410
FT /organism="Flexal virus"
FT /segment="S"
FT /strain="BeAn 293022"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:45220"
FT CDS 59. .1582
FT /codon_start=1
FT /product="glycoprotein precursor"
FT /note="G1+G2 precursor"
FT /protein_id="AAN32961.1"
FT /translation="MGQVVTFFQSIPEIIQEAINIALIAVSVICIIKGCVNLWKCGLIQ
FT LMVFLLLAGKRCDALNIDRRHVLSSVELNLTRMFDNFPQSCSKNNTHHYYKGPEGTNWG
FT IELTLTNTSVANYTSMNRIRSLAFGNITNCDKTGEAGHTLKWLLNELHFNVLHVTRHVG
FT ARCMTTEGAGLLIQYNLTIGDHGGEVGRHLIASLAQIIGDNKAAWVGKCDSRCSNDGKC
FT NYTNCEGYTHYNYLIIQNTTWAQHCTYSPLPSIRMALNKVAYSSVSRSLLGFFTWDISD
FT SSGNHVPGGYCLEQWAVVWAGIKCFDNAVMAKCNKEHDVEFCDTMRLFDYNQNAIKTLQ
FT LNTENAVNLLKRSINGLISDSLVIRNSLKQLARIPYCNYTKFWYINDTVSGKHSLPQCW
FT KVHNGSYLNESQFKNEWLLESDHLYSEMLLKEYEERQGRTPLALTDICFWSLVFFTSTV
FT FLHLVGIPSHRHIVGDACPKPHRITKNALCSCGYYNLPGKQVRWVRKGK"
FT CDS complement(1681. .3360)
FT /codon_start=1
FT /product="nucleocapsid protein"
FT /protein_id="AAN32962.1"
FT /translation="MSDSNIPAFRWTQALRRGLSNWTQTVKADVIKDAKAIMSALDFNQ
FT VAQVQRMMRKDKRSEADLTRLRDMNKEVDALMTMRSVQRDVVLKIGGLSKDELLELSSD
FT LEKLRKKVMRAEGSSTPGVYQGNLTTSQLQQRADLLKLVGMKPLQQSRGGVVKVWDVKD
FT SSLMINQFGSMPALTIACMTEQGGEQMNDVVQGLTALGLVYTVKFPNLDDLEKLTEQHP
FT CLKLITQEQSQINISGYNLSLSAAVKAGACMIDGGNMLETIKVSPSMFSTLIKTVLQVK
FT NREGMFIGNAGPQRNPYENLLYKICLSGEGWPYIGSRSQVSGRAWDNTSIDIEGKPSPN
FT HPPVRNGGTPQINPLSRDQEDQVKGAVRLLDPKVTTWVDIEGPPGDLVEFAIFQPNSGK
FT YLHCYRRPHNEQSFKDQSKFSHGLLLKDLESAQPGLVSAIIRALPEGMVLTAQGSDDIE
FT KLFLMHGRRDLKVVDVALTSEQARVYEDTVWERFNPLCKKHKGLVIKKKKKGAAPTSTN
FT AHCALLDCIMFDATITGYIADAKPQQLLPIDLLYRTENLIHL"
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SQ Sequence 3410 BP; 879 A; 803 C; 768 G; 960 T; 0 other;
af512831 Length: 3410 13-SEP-2008 Type: N Check: 8937 ..
1 cgcacagtgg atcctaggca ttttcctgaa tctgcgcaac attctgactc
51 cttgaaagat gggtcaggtg gtgactttct ttcaatcaat tcctgagatc
101 atacaagagg ccatcaacat tgctctaatt gctgttagcg tcatctgcat
151 catcaaaggc tgtgtaaacc tctggaaatg tggtctaatt caactgatgg
201 tctttctctt gcttgcgggg aaaaggtgtg atgctcttaa cattgataga
251 agacatgtgc tgtcatctgt ggaactcaac ctaacgagga tgtttgacaa
301 ttttcctcag tcctgttcca agaataacac acaccactat tataaaggcc
351 ctgaaggaac aaactgggga attgagctca ctttgaccaa tacgtcggtt
401 gccaactaca catcgatgaa taggatcaga agtcttgctt ttggcaatat
451 caccaattgt gacaagactg gtgaggcagg tcacactctc aaatggcttt
501 taaatgagct acacttcaat gttttacatg tgacgagaca tgtgggtgca
551 agatgcatga caacagaggg tgcaggactt ctgattcaat acaacctgac
601 aattggagat catgggggtg aggtagggag acatctgata gcatcacttg
651 ctcagatcat cggtgacaat aaagcagctt gggtggggaa atgtgactcc
701 agatgttcca acgatggtaa gtgcaactac actaactgtg aaggctacac
751 acactataat tatctcatta tccagaacac cacatgggct caacattgca
801 catacagtcc tctaccctcc atcaggatgg cattgaacaa agtggcctat
851 agttctgtca gtagatcact ccttggattc ttcacctggg atatttcaga
901 ctcatcagga aaccatgtcc ctggtgggta ctgtttggag cagtgggccg
951 ttgtttgggc tgggatcaag tgttttgaca acgcggtgat ggccaagtgc
1001 aacaaagagc atgatgttga gttttgtgac acaatgagac tttttgatta
1051 caaccaaaat gctataaaga ctctccaact taatacagag aatgcagtta
1101 acttactcaa gagatcaata aatggattga tttcagactc attagtcatt
1151 agaaacagtc tgaagcaact agccaggatt ccctactgca actacaccaa
1201 attttggtac attaatgaca cagtcagtgg gaaacattct ctcccacagt
1251 gttggaaggt tcacaatgga agctacttaa atgagtcaca gttcaagaat
1301 gagtggctct tagagagtga ccacctgtat agtgagatgt tgctgaaaga
1351 gtacgaagag agacagggga ggacccctct agcactaact gacatctgct
1401 tttggtcact agtgtttttc actagtacag ttttcctcca cctggtgggc
1451 atcccctcac acaggcacat tgttggcgat gcgtgcccta aaccacacag
1501 aataactaag aatgctctat gctcttgtgg ttattacaac ctaccaggca
1551 aacaagtcag gtgggtcagg aaagggaagt aaacaccatc cccccccact
1601 ccgccccgac aggggcggag tggggggcgc cccgggatct ccaccccctt
1651 gggagtggag atccggggag cagatgcagc tcacaggtgt atcaggtttt
1701 cagttcggta tagtaaatca attgggagca actgctgagg ttttgcatca
1751 gctatgtagc cagtaattgt ggcgtcaaac atgatgcagt ccagcagggc
1801 acagtgtgca ttggtcgatg ttggggcagc acccttcttt ttcttcttga
1851 tgacaaggcc tttgtgtttc ttgcacaagg ggttgaatct ctcccagaca
1901 gtgtcctcat acactctggc ttgttcacta gtgagagcaa cgtccactac
1951 cttcaggtct ctcctgccat gcatcaggaa caacttttca atgtcgtctg
2001 agccttgtgc tgtcaacacc attccttcag gtagggccct gatgattgca
2051 gacaccaacc ctggttgtgc agactcaagg tccttaagca gaaggccgtg
2101 tgagaattta ctttggtcct tgaatgattg ctcattgtga gggcgcctgt
2151 aacagtggag gtatttgcca ctgtttggct gaaagattgc aaactccact
2201 aagtccccag ggggcccctc aatgtcaacc caggttgtta ctttagggtc
2251 caacagcctc acagctcctt tcacttgatc ttcctggtct ctgcttagtg
2301 ggttaatttg tggagttcca ccatttctca ctggagggtg gttgggtgag
2351 ggtttcccct cgatgtcgat agatgtgttg tcccatgctc tcccagaaac
2401 ttgtgatctg gagccaatgt atggccaccc ttcaccactc aggcagatct
2451 tgtaaagcag attctcataa ggatttcttt gaggtccagc attgccaatg
2501 aacattccct ctctgttttt cacttgaaga actgtcttta taagtgtact
2551 aaacatgctt ggggaaacct taatggtctc taacatgttc cctccgtcaa
2601 tcatacaagc acctgctttg acagctgcag aaagactcag attatagcct
2651 gaaatgttga tctgtgattg ttcttgggtg atgagcttca agcagggatg
2701 ttgttcggtc agcttttcca agtcatccaa gtttgggaac ttcacagtgt
2751 acacaagccc taatgctgtc aaaccttgca caacatcatt catttgttct
2801 ccgccctgct ctgtcataca ggcaatggtt aatgctggca tggagccaaa
2851 ctgattgatc ataagagaag aatctttgac atcccatact ttaactaccc
2901 cacctcttga ttgttgcaga ggcttcatgc caaccagctt aagcagatcc
2951 gctctctgct ggagctgtga tgttgttaag ttgccttgat agacacctgg
3001 tgtacttgat ccctctgctc tcatcacttt ctttctcaac ttctcaaggt
3051 ctgatgataa ctccagcaac tcatccttag atagccctcc tatcttcaac
3101 accacatctc tctgaactga tctcattgtc atgagagcat caacctcctt
3151 gttcatgtct ctcaatctag tgagatcagc ttcagatcgt ttgtccttcc
3201 tcatcattct ctgaacttgt gccacctgat tgaagtcaag ggcactcata
3251 atagcctttg catctttgat gacatcggct ttgacagtct gtgtccagtt
3301 ggataggcct cttctgagag cttgagtcca acgaaacgca ggaatatttg
3351 agtcactcat ggtgattcaa tgcgcaatga gttcctaaaa tgcctaggat
3401 ccactgtgcg