Sequence of DPV Cupixi virus
Cupixi virus strain BeAn 119303 glycoprotein precursor and nucleocapsid protein genes, complete cds.
ACC No: AF512832
Dated: 2003-05-29 | Length: 3332 | CRC: -1610219726
ID AF512832; SV 1; linear; genomic RNA; STD; VRL; 3332 BP.
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AC AF512832;
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DT 04-OCT-2002 (Rel. 73, Created)
DT 29-MAY-2003 (Rel. 75, Last updated, Version 3)
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DE Cupixi virus strain BeAn 119303 glycoprotein precursor and nucleocapsid
DE protein genes, complete cds.
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KW .
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OS Cupixi virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
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RN [1]
RP 1-3332
RX DOI; 10.1016/S0006-291X(02)02053-3.
RX PUBMED; 12207889.
RA Charrel R.N., Feldmann H., Fulhorst C.F., Khelifa R., de Chesse R.,
RA de Lamballerie X.;
RT "Phylogeny of New World arenaviruses based on the complete coding sequences
RT of the small genomic segment identified an evolutionary lineage produced by
RT intrasegmental recombination";
RL Biochem. Biophys. Res. Commun. 296(5):1118-1124(2002).
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RN [2]
RP 1-3332
RA Charrel R.N., de Chesse R., de Lamballerie X.;
RT ;
RL Submitted (16-MAY-2002) to the EMBL/GenBank/DDBJ databases.
RL Unite des Virus Emergents (EA3292, IRD UR034, IFR48), Universite de la
RL Mediterranee, 27 blvd Jean Moulin, Marseille 13005, France
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FH Key Location/Qualifiers
FH
FT source 1. .3332
FT /organism="Cupixi virus"
FT /segment="S"
FT /strain="BeAn 119303"
FT /mol_type="genomic RNA"
FT /virion
FT /db_xref="taxon:208899"
FT CDS 55. .1497
FT /codon_start=1
FT /product="glycoprotein precursor"
FT /note="G1+G2 precursor"
FT /db_xref="GOA:Q8B115"
FT /db_xref="InterPro:IPR001535"
FT /db_xref="UniProtKB/TrEMBL:Q8B115"
FT /protein_id="AAN32963.1"
FT /translation="MGQLVSFFQEIPVFFQEALNIALAVVTLLAIVKGVLNLWKSGLFQ
FT LLMFLILAGRSCSFRIGYHTSFESFTMTIGGVFHELPALCKVNDTYNLVRLSHNSSLAL
FT SVEYGDTGTVMCEHGHVVSGNYTECTGASEEYNWVLDWVLRGLQHDFSRDPVICCEPKK
FT KTNAEFQFRLNLTQRHKGDHYQNKIKTALTHLFGPFAYNEKDPKIFVTMRNTTWTNQCV
FT MSHTDSLRLLASNGGNSFSGRGLKAFFSWSLSDSTGVDMPGGYCLEKWMLIASELKCFG
FT NTALAKCNLKHDSEFCDMIKLFDFNKNAISKLNNNTIEAVNQLTKTVNSLISDNLLMKN
FT RLRELLKVPYCNYTRFWYVNHTRTGEHSLPKCWLVNNGSYLNESDFRNEWILESDHLIS
FT EMLSKEYQERQGRTPLTLVDLCFWSAVFYTTTLFLHLVGFPTHRHISGEPCPLPHRLNR
FT HGACNCGRFKRLKKPLVWYKHH"
FT CDS complement(1593. .3275)
FT /codon_start=1
FT /product="nucleocapsid protein"
FT /db_xref="GOA:Q8BD28"
FT /db_xref="InterPro:IPR000229"
FT /db_xref="UniProtKB/TrEMBL:Q8BD28"
FT /protein_id="AAN32964.1"
FT /translation="MSLSKEVPSFRWTQSLRRELSSYTQQTKTLVLKDAKMIADSLDFN
FT QVSQVQRVLRKAKRSDADLDKLRDLNQEVDKLMVMKSVQKNTILKLGDLGKDELMDLAT
FT DLEKLKRKIGDSGRDGPRPYMGNLTQSQLDKRTQILRVLGFQQQTGVSRGVVRLWDVSN
FT PAKLNNQFGSMPALTIACMTVQGGETMNNVVQALTSLGLLYTVKYPNLEDLEKLTQEHD
FT CLQIITRDESAVNISGYNFSLSAAVKAGASLIDGGNMLETIRVTPNNFSSIIKATLTAK
FT RKENMFVDERPGNRNPYENLLYKVCLSGEGWPYIGSRSQINGRSWDNTSVDLNPKPDPG
FT PRAPEKNGQNLRLSNLTEMQEAVIKEAMQKLDPTNTIWMDIEGPPTDPVELAVFQPTSG
FT YYFHCFRKPHDEKGFKNGSRHSHGILLKDLEDAQPGLLSYILGLLPQNIVITTQGADDI
FT RKLLDVHGRKDIKLVDVRLTNEQSRIFEQQVWERYNSLCRAHNGVIVPKKKNKESNIQK
FT EPHCALLDCIMFQSVLDGHLPDTSLKPLLPDNLVHQAKPAFVM"
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SQ Sequence 3332 BP; 834 A; 739 C; 766 G; 993 T; 0 other;
af512832 Length: 3332 29-MAY-2003 Type: N Check: 7946 ..
1 cgcacagtgg atcctaggcg acattgacga cgcattgctt ggagattctt
51 aacaatgggc cagttagtga gcttctttca ggagatacca gtgttctttc
101 aggaagctct gaatatagcc ttggctgttg tcaccctact ggccatcgtc
151 aagggggttc tgaatctctg gaaatcaggt ctcttccagc tgttgatgtt
201 tttaatcttg gcaggaaggt catgctcttt tagaattggg tatcacacca
251 gctttgagtc tttcaccatg accattgggg gtgttttcca tgagttaccc
301 gctctgtgca aggtgaatga cacctataac ttggttaggc tctctcataa
351 tagcagtttg gcactctcag ttgagtacgg cgacactggc acagttatgt
401 gtgaacatgg gcatgtggtt agtggaaact acaccgaatg cactggagct
451 tccgaggaat acaactgggt tcttgactgg gtcctgagag gtctacaaca
501 tgattttagc agagatccgg taatctgttg cgagccaaag aagaaaacaa
551 atgctgagtt tcagtttcga ttaaacctga cgcagcgtca taagggtgac
601 cattatcaga acaaaattaa gacagcgttg acccatctat ttggcccatt
651 tgcatacaat gagaaagacc cgaagatatt cgttaccatg aggaatacca
701 catggacgaa tcagtgtgtc atgagtcata ctgactcatt aaggttgcta
751 gccagtaatg ggggcaattc attctcaggg agaggactca aagccttctt
801 cagttggtct ttgtcagatt caacaggtgt tgacatgcca ggtggttatt
851 gtctagaaaa gtggatgttg attgcttctg aattgaagtg ttttgggaac
901 acagcattgg ctaaatgcaa tttgaagcat gattcagaat tctgtgatat
951 gatcaaactc tttgatttca acaaaaatgc aatcagtaaa cttaataata
1001 acacaattga ggctgtcaat cagttgacaa aaacagtcaa cagcctcatc
1051 tctgataatc tactgatgaa gaatagatta agggagcttt tgaaagttcc
1101 ttactgcaac tatactagat tctggtatgt aaaccacaca agaactggag
1151 aacattccct tccaaagtgc tggttggtca acaacggaag ctaccttaat
1201 gaaagtgatt ttagaaatga gtggattttg gaaagtgacc accttatttc
1251 ggaaatgttg agcaaggaat atcaagagag acaggggagg accccactga
1301 cacttgtgga cctctgtttc tggagtgccg tcttctacac gactacactc
1351 ttcctccatc tagtgggttt cccaacccac agacacatct caggtgagcc
1401 ttgtccactc ccccacagac tcaacaggca tggtgcctgt aactgcgggc
1451 gcttcaagag actaaaaaag cctttagttt ggtataaaca tcattgaatc
1501 tctatcccca aatctcaccg gcccgggctt tgcccgggtc ggtggggcgc
1551 ctcccagccc gcggcagagc cgcgggctgg gagggcatac gcctacatca
1601 cgaatgctgg tttggcctga tgcaccaggt tgtcggggag tagtggctta
1651 aggctggtgt ctggaagatg accatctagc actgattgga acatgatgca
1701 atccagaaga gcacagtgag gctctttttg aatgttggat tccttattct
1751 ttttcttagg gacaatgacc ccattgtgag ctctgcataa ggagttgtat
1801 ctttcccaca cttgttgttc aaaaattctt gactgctcat ttgtgagcct
1851 cacatccaca agtttaatgt ctttccttcc atggacatcc aagagttttc
1901 ttatgtcatc tgcaccctgc gtcgtgatga caatgttctg agggagtaaa
1951 cccaagatgt agctcaagag accaggttga gcgtcctcaa gatcctttag
2001 tagaataccg tgagaatgtc tgctaccatt tttgaacccc ttttcatcat
2051 gaggtttcct gaaacagtgg aaatagtagc cacttgtagg ttggaaaaca
2101 gctagctcta ctgggtctgt aggtggacct tcaatgtcca tccagatggt
2151 gtttgtcgga tcaagttttt gcatggcctc tttgatgact gcttcttgca
2201 tttcagtgag gttgctaagt cttaaatttt gcccattttt ctcaggcgcc
2251 ctgggcccag ggtccggctt ggggttaagg tcaacactgg tgttatccca
2301 tgacctaccg ttgatttgtg accttgaacc tatgtagggc caaccttctc
2351 cggagagaca aactttgtaa aggagattct cataaggatt tctgtttcca
2401 ggtctttcgt cgacaaacat gttctctttt cttttggcag tcaaagtggc
2451 ctttattatg gaggagaagt tattgggtgt gactcttata gtctccagca
2501 tatttcctcc atcaataagt gaggctcctg ctttcacagc tgcagatagg
2551 ctaaagttgt agcctgagat gttcactgca ctttcatccc ttgtaattat
2601 ttggaggcag tcgtgctcct gtgtcagttt ttccaaatcc tccaaattcg
2651 ggtatttgac tgtgtataaa agcccaaggg atgttaaagc ttgcaccaca
2701 ttattcatgg tttcacctcc ttgaactgtc atacaggcta ttgtaagtgc
2751 tggcattgac ccaaactgat tgtttagttt agctgggttg gagacatccc
2801 agagtctaac aactcctcta ctgaccccag tctgctgctg gaaccccagg
2851 acccttaaaa tttgtgtcct cttgtctagt tgtgactgtg taaggtttcc
2901 catgtagggg cgaggaccat ccctgccact gtcaccaatt ttccgcttca
2951 atttttccag atctgttgct agatccatga gctcgtcttt ccccaggtct
3001 ccaagtttaa gaattgtgtt tttttgcaca ctcttcataa ccataagttt
3051 gtccacctct tgatttagat cccttagttt gtctagatca gcatcgctcc
3101 tcttagcttt ccggaggact ctttgtacct gagacacctg attgaagtcc
3151 aggctatcag ctatcatttt agcatccttt aagacgagtg tcttggtttg
3201 ctgtgtgtag ctactcagtt ctcttctcag agattgagtc cagcgaaagc
3251 tgggaacctc tttggagaga gacattttgt gaaaggtttc cgcctcaagt
3301 gaaagacaaa aatgcctagg atccactgtg cg