Sequence of DPV Rice stripe virus

Rice stripe virus isolate HZ segment 4, complete sequence.

ACC No: AF513505

Dated: 2003-05-29 | Length: 2157 | CRC: 1593280244

                !!NA_SEQUENCE 1.0
ID   AF513505   standard; genomic RNA; VRL; 2157 BP.
XX
AC   AF513505;
XX
SV   AF513505.1
XX
DT   09-JUN-2002 (Rel. 72, Created)
DT   29-MAY-2003 (Rel. 75, Last updated, Version 2)
XX
DE   Rice stripe virus isolate HZ segment 4, complete sequence.
XX
KW   .
XX
OS   Rice stripe virus
OC   Viruses; ssRNA negative-strand viruses; Tenuivirus.
XX
RN   [1]
RP   1-2157
RA   Wei T.Y., Wang H., Lin H.X., Wu Z.J., Lin Q.Y., Xie L.;
RT   ;
RL   Submitted (17-MAY-2002) to the EMBL/GenBank/DDBJ databases.
RL   Plant Protection, The Institute of Plant Virology, Fuzhou, Fujian 350002,
RL   China
XX
DR   SPTREMBL; Q8JQG5; Q8JQG5.
DR   SPTREMBL; Q8JQG6; Q8JQG6.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2157
FT                   /country="China"
FT                   /db_xref="taxon:12331"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Rice stripe virus"
FT                   /isolate="HZ"
FT                   /segment="4"
FT   CDS             55. .591
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q8JQG6"
FT                   /note="disease-specific protein"
FT                   /product="major non-capsid protein"
FT                   /protein_id="AAM49599.1"
FT                   /translation="MQDVQRTIEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPER
FT                   VTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDGNALIDI
FT                   GLFFNMLQPSLGGWITKNLLRHPNRMSKDQIKMLLDQIIKMAKAESLDTEEYEKVWKKM
FT                   PTYFESIIQPLLHKT"
FT   CDS             complement(1246. .2106)
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q8JQG5"
FT                   /note="32K protein; putative 30K movement protein"
FT                   /product="VCP4 protein"
FT                   /protein_id="AAM49600.1"
FT                   /translation="MALSRLLSTSKSKVLYDDLSEESQKRVDNKNRKSLALSKRPLNQG
FT                   RVTIDQAATMLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRKATFNILVDPYWFHQPLT
FT                   HYPFFRVATFAMVWIGIKGRASGITTLRIIDKSYVNSSDQVGVEVRYPISKNFAVLGSL
FT                   ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGVERTNLPVSMKTSDTVMFEFEPL
FT                   EDKAINHLSSFSNFTTNVVQKAVGGAFASKSFPELDTEKEFGVVKQPKKIPITKKSKSE
FT                   VSVIM"
XX
SQ   Sequence 2157 BP; 690 A; 441 C; 404 G; 622 T; 0 other;

AF513505  Length: 2157  September 11, 2003 13:48  Type: N  Check: 1719  ..

       1  acacaaagtc cagggcattt gtacaacgat ccagcaattt aatcagaatc
      51  gaagatgcaa gacgtacaaa ggacaataga agtttctgtt ggtcctattg
     101  taggcctaga ttacactcta ttgtatgaca ctctgcccga gactgttagt
     151  gataacatta ctctacctga tttgaaagat ccagagagag tcacggaaga
     201  tactaagaag ctaatactca aaggctgtgt ttacatcgca tatcatcacc
     251  ccttagagac tgacaccctt ttcatcaaag ttcacaaaca tataccagag
     301  ttttgtcact cattcttatc acacctgtta ggaggtgaag atgatggcaa
     351  tgcccttata gacattggtc tgtttttcaa catgttgcaa ccctctttgg
     401  gcggttggat aactaagaat cttcttagac accctaatag gatgtctaag
     451  gaccaaatta aaatgctcct agatcagatt atcaagatgg ctaaggctga
     501  gagcttagac acagaagagt atgagaaagt gtggaagaag atgccaactt
     551  attttgaatc aattattcaa cctcttctac acaaaacata gtttattgca
     601  tatcacattt tccacccacg agtgcttgca ttctagaagt ggagccagtt
     651  tgggttgacc ttcttgtatg aaaatacaag tatattatag tctaaacaat
     701  atacatgatg tttgttcact taagcttgac agtttgtaaa taattgtgtg
     751  tgattgagcg tgtgtgtata tatgtatcaa tgtataactg tacacaggtg
     801  tgtgtatgta aacacttgaa ataaataaat aaatatatac ctatcaaatc
     851  atatacatgc ttgtgagtct tggctcctct atatactcac atagaaacat
     901  gagagtatca aacaagcccc attgaaaaat actaataatt ttgcttttgc
     951  aatgtcaaaa ccaaaaactg aaataccaaa aacatgagaa aatagaaaat
    1001  caaaaacaat ggaatggtgc taagcaccac tccgggatgt gggtgcgtag
    1051  caccattttc ataacattag tctataacct acttgtggca aaaacaccca
    1101  tatgcatgaa gtgcttagca ctctcttatg gattgaccac tatgattacg
    1151  tgaatgcata gcattctctt gaaaaaacag agcagaatag aacacatcaa
    1201  gtgcgtagca cctagatgtt agcatactct ggacggtttt ctcacctaca
    1251  tgatgacaga aacttcagat tttgatttct ttgtgatggg tatcttcttt
    1301  ggctgcttca ccacaccgaa ctccttctca gtatctagct cagggaagct
    1351  cttgctggcg aaagcacctc caacagcttt ctgaacaaca ttagtcgtga
    1401  aattactgaa gctggacaaa tggtttatag ccttatcttc tagtggttca
    1451  aattcaaaca tcacagtgtc actagtcttc atggacactg gcagattagt
    1501  cctttcaacc ccccagaacc aaagagttct agagatgaca cagttctgca
    1551  ctgagctgtc atcaacggat acggacactt gaagattatg cttatcctcc
    1601  aaagccagaa aattcgctag agaacccaag acagcaaaat tcttgctaat
    1651  tgggtagcga acctccaccc caacttgatc tgaggagtta acataggact
    1701  tgtctattat gcggagggta gttattccac tagctctacc cttaattcca
    1751  atccagacca tagcaaaagt tgccactcta aagaatggat aatgggtgag
    1801  aggttgatga aaccaatatg gatcaacaag tatgttgaaa gttgctttcc
    1851  tatgggcctt cacagaatag tcctgtttgg ctatgaacat atcatacttg
    1901  ttcaccttga catctgagaa gctgaagggt tccaatccaa gcattgtggc
    1951  agcttggtca atcgtaaccc taccctggtt cagaggcctc ttagagagag
    2001  ctaaagattt cctattctta ttatcaactc tcttttggga ctcctcacta
    2051  aggtcatcat agagtacctt actttttgaa gtggacaaaa gtcgagacaa
    2101  agccataatt aaagtatata ttagcttaat ctcaaaagat atgccctgac
    2151  tttgtgt