Sequence of DPV Cotton leaf curl Multan virus
Cotton leaf curl Multan virus-[Faisalabad3] complete genome
ACC No: AJ132430
Dated: 2005-04-15 | Length: 2722 | CRC: -1947336661
!!NA_SEQUENCE 1.0
ID CLE132430 standard; circular genomic DNA; VRL; 2722 BP.
XX
AC AJ132430;
XX
SV AJ132430.1
XX
DT 17-MAY-2000 (Rel. 63, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Cotton leaf curl Multan virus-[Faisalabad3] complete genome
XX
KW C1 gene; C2 gene; C3 gene; C4 gene; coat protein; replicase; V1 gene;
KW V2 gene.
XX
OS Cotton leaf curl Multan virus-[Faisalabad3]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2722
RA Briddon R.W.;
RT ;
RL Submitted (22-JAN-1999) to the EMBL/GenBank/DDBJ databases.
RL Briddon R.W., Virus Research, John Innes Centre, Colney Lane, Norwich, NR4
RL 7UH, UK.
XX
RN [2]
RX DOI; 10.1023/A:1008151921937.
RX MEDLINE; 20227370.
RX PUBMED; 10766303.
RA Briddon R.W., Mansoor S., Bedford I.D., Pinner M.S., Markham P.G.;
RT "Clones of cotton leaf curl geminivirus induce symptoms atypical of cotton
RT leaf curl disease";
RL Virus Genes 20(1):19-26(2000).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2722
FT /db_xref="taxon:223256"
FT /mol_type="genomic DNA"
FT /virion
FT /organism="Cotton leaf curl Multan virus-[Faisalabad3]"
FT /isolate="Pakistan"
FT /tissue_type="leaf"
FT /specific_host="Gossypium hirsutum (cotton)"
FT CDS 117. .446
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProt/TrEMBL:Q9IWB7"
FT /gene="v2"
FT /product="V2 protein"
FT /protein_id="CAB91850.1"
FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL
FT IGILRSRNYVEASCRYSHFYARVESTPACELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ
FT EAQNV"
FT CDS 277. .1047
FT /db_xref="GOA:Q9IWB6"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProt/TrEMBL:Q9IWB6"
FT /gene="v1"
FT /product="coat protein"
FT /protein_id="CAB91851.1"
FT /translation="MSKRAADIVISTPASKVRRRVNFGSPYTSRAAAPIVRVTKQQAWT
FT NRLMNRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT IGKRFCVKSDYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKHENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVPN"
FT CDS complement(1050. .1454)
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProt/TrEMBL:Q9IWB5"
FT /gene="c3"
FT /product="C3 protein"
FT /protein_id="CAB91852.1"
FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKTISHVNRPFTTNMDI
FT LTFRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKTQVLKYLNNLGVISINL
FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLH"
FT CDS complement(1147. .1599)
FT /db_xref="GOA:Q9IWB4"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProt/TrEMBL:Q9IWB4"
FT /gene="c2"
FT /product="C2 protein"
FT /protein_id="CAB91853.1"
FT /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN
FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHVQDPVQLQH
FT SESFGTAQVFSNLPNLDDLTASDWSFLKGIQNPSPQISEQSRCNFN"
FT CDS complement(1496. .2581)
FT /db_xref="GOA:Q9IWB3"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProt/TrEMBL:Q9IWB3"
FT /gene="c1"
FT /product="replicase"
FT /protein_id="CAB91854.1"
FT /translation="MPRALKTNAKNYFLTYPKCSLTKEETLSQLQNLHTPVSKKYIKIC
FT RELHQNGEPHLHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSRSDVKAYIDK
FT DGDTLEWGEFQIDGRSARGGQQTADDAYAAALNAGRKSEVLRVIKELAPKDFVQQFHNL
FT NANLDRIFREPPAPNISPFSRSSLDQVPEELEVWAIDNVVDPAARPLRPRSIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDEVDPHFLKHFKEFMGAQRDWQS
FT NTKYGKPVQIKGGIPTIFLCNPGPNCSYKEFLDEEKNTALKNWAVKNAIFITLDRPLYS
FT GTNQSTAQGSEEAQQEEESRS"
FT CDS complement(2146. .2430)
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProt/TrEMBL:Q9IWB2"
FT /gene="c4"
FT /product="C4 protein"
FT /protein_id="CAB91855.1"
FT /translation="MGNLIFTCSSSSRASTNARITDSSTWYPQPGQHISIRTFRELNQG
FT QMSRPTSTRTGTLSNGESFRSMEDQQEEDNRQQTTLTPQHLTQAESQRF"
XX
SQ Sequence 2722 BP; 687 A; 548 C; 649 G; 838 T; 0 other;
AJ132430 Length: 2722 April 19, 2005 08:53 Type: N Check: 3034 ..
1 accggatggc cgcgcgattt tttatgtggg cccccgatgt atgagattgc
51 tccctcaaag ctaaataacg ctcccgcaca ctataagtac ttgcgcacta
101 agtttcaaat tcaaacatgt gggatccact attaaacgaa ttccctgata
151 cggttcacgg gtttcggtgt atgctttctg tgaaatattt gcaacttttg
201 tcgcaggatt attcaccgga tacgcttggg tacgagttaa tacgggattt
251 aattggaatt ttacgctccc gtaattatgt cgaagcgagc tgccgatata
301 gtcatttcta cgcccgcgtc gaaagtacgc cggcgtgtga acttcggcag
351 cccatacacc agccgtgctg ctgcccccat tgtccgcgtc acaaaacaac
401 aggcatggac aaacaggctt atgaacagga agcccagaat gtataggatg
451 tacagaagtc cggatgttcc aaagggttgt gaaggcccat gtaaggtaca
501 atcttttgag tcgagacatg atgtcgttca tattggtaag gtaatgtgta
551 tttctgatgt tactcgtggt gtcggtttga cccatcgtat tggtaaacgt
601 ttttgtgtca agtcagatta tgttttaggt aagatatgga tggatgaaaa
651 tataaagacc aagaatcaca cgaattcggt gatgttcttt ttagtccgcg
701 atcgacgtcc tgttgacaaa cctcaggatt ttggtgaggt atttaatatg
751 tttgacaatg aacccagtac agcgactgtg aagaatagtc atagggaccg
801 ttaccaggtg ttgaggaaat ggcatgcaac cgttacgggt ggtcaatatg
851 catcgaagga acaggctttg gtcaagaagt ttgtcagagt taacaattat
901 gttgtttaca atcaacagga agcaggaaaa cacgagaatc atacggaaaa
951 tgcgttaatg ctttatatgg cttgtactca cgctagcaac cctgtttatg
1001 ctacgttgaa gattaggata tatttttatg actctgtacc gaattgatat
1051 taatgaagtt tgaattttat ttctgaatat tgatctacat acatagtttg
1101 ttggattaca ttgtacaata catgttctac agctttaata actaaattaa
1151 ttgaaattac accgagattg ttcagatatt tgaggacttg ggttttgaat
1201 acccttaaga aaagaccagt ctgaggctgt aaggtcgtcc agattcggaa
1251 ggttagaaaa cacttgtgca gtcccaaagc tttccgagtg ttgtagttga
1301 actggatcct gaacgtgagt atgtccatat tcgtcgtgaa tggacggttg
1351 acgtggctga tggtcttgaa ataaagggga tttggaacct cccagatata
1401 tgcgccattc cctgcttgag ctgcagtgat gggttcccct gtgcgtgaat
1451 ccatggttgt ggcagttgat tgacagataa taagaacacc cgcattcaag
1501 atctactctc ctcctcctgt tgcgcctctt cgcttccctg tgctgtactt
1551 tgattggtac ctgagtacag gggtctatca agtgtgatga agatcgcatt
1601 ctttactgcc cagttcttta gtgcggtgtt cttttcctcg tctaggaatt
1651 ctttataact gcaatttgga ccaggattgc ataggaagat tgttggtatc
1701 ccgcctttaa tttgaactgg cttcccgtac tttgtgttgg attgccagtc
1751 cctttgggcc cccatgaact ctttaaagtg tttgaggaaa tgcgggtcga
1801 cctcatcaat gacgttatac caggcgtcgt tactgtagac cttgggactc
1851 aggtccagat gtccacacaa atagttatgt ggtcccagtg atctagccca
1901 catcgtcttc cccgttcgac tatctccttc aattactata cttcgaggtc
1951 taaggggccg cgcagcggga tccacaacgt tatcgatggc ccaaacttca
2001 agttcttctg gaacttgatc caaagaagaa cgagaaaaag gagaaatatt
2051 gggagccggt ggctcccgaa atattctgtc tagatttgca tttaaattat
2101 gaaattgttg tacaaaatct ttaggagcta gttccttaat gactcttaga
2151 acctctgact ttctgcctgc gttaagtgct gcggcgtaag cgtcgtctgc
2201 tgtctgttgt cctcctcttg ctgatcttcc atcgatctga aactctcccc
2251 attcgagagt gtccccgtcc ttgtcgatgt aggccttgac atctgacctt
2301 gatttagctc cctgaatgtt cggatggaaa tgtgctgacc tggttgggga
2351 taccaggtcg aagaatctgt tattcgtgca ttggtacttg ccctcgaact
2401 ggatgagcac gtgaagatga ggttccccat tttggtgaag ctctctgcag
2451 atcttgatgt attttttgct tactggggta tgtaggtttt gtaattggga
2501 gagggtttct tctttagtta gagagcattt gggataagtg aggaagtagt
2551 ttttggcgtt tgtttttaaa gcacgtggca ttttggcaat cggtgtacac
2601 tctaattctc tggcaattgg tgtaacgggg tgcaatatat aggtgtaccc
2651 caaatggata tcgtaatggg agaaatcatt tcgagatcct cacgctccaa
2701 aagcggccat ccgtataata tt