Sequence of DPV Maize streak virus
Maize streak virus - Reunion [SP2R7] complete genome, isolate SP2, clone R7
ACC No: AJ225008
Dated: 2004-09-09 | Length: 2685 | CRC: -2017720512
!!NA_SEQUENCE 1.0
ID MSVAJ5008 standard; circular genomic DNA; VRL; 2685 BP.
XX
AC AJ225008;
XX
SV AJ225008.1
XX
DT 17-MAR-1998 (Rel. 55, Created)
DT 09-SEP-2004 (Rel. 81, Last updated, Version 5)
XX
DE Maize streak virus - Reunion [SP2R7] complete genome, isolate SP2, clone R7
XX
KW capsid protein; complete genome.
XX
OS Maize streak virus - Reunion [SP2R7]
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus; Maize streak virus.
XX
RN [1]
RP 1-2685
RA Peterschmitt M.;
RT ;
RL Submitted (23-FEB-1998) to the EMBL/GenBank/DDBJ databases.
RL Peterschmitt M., CIRAD-AMIS, Programme Protection des Cultures, CIRAD, BP
RL 5035, 34032 Montpellier Cedex 1, FRANCE.
XX
RN [2]
RX MEDLINE; 97049057.
RX PUBMED; 8893787.
RA Peterschmitt M., Granier M., Frutos R., Reynaud B.;
RT "Infectivity and complete nucleotide sequence of the genome of a
RT genetically distinct strain of maize streak virus from Reunion Island";
RL Arch. Virol. 141(9):1637-1650(1996).
XX
RN [4]
RA Isnard M., Granier M., Frutos R., Reynaud B., Peterschmitt M.;
RT "Quasispecies nature of three related maize streak virus isolates obtained
RT through different modes of selection from a population used to asses
RT response to infection of maize cultivars";
RL J. Gen. Virol. 79:3091-3099(1998).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2685
FT /db_xref="taxon:268342"
FT /mol_type="genomic DNA"
FT /virion
FT /organism="Maize streak virus - Reunion [SP2R7]"
FT /clone="R7"
FT /isolate="SP2"
FT CDS join(2684. .2685,1. .304)
FT /db_xref="UniProt/TrEMBL:Q77B35"
FT /gene="MP"
FT /product="10.9 kd MP protein"
FT /protein_id="CAA12314.1"
FT /translation="MDPQNSLYVQPRVPTAAPTSAGVPWSRVGEVAILSFVALICFYLL
FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNIPAPPSQGNPGPFVPGTG"
FT CDS complement(161. .505)
FT /db_xref="UniProt/TrEMBL:Q77B34"
FT /product="13.1 kd protein"
FT /protein_id="CAA12315.1"
FT /translation="MRSHTPPEGTVIMVVPACWSVWIWRDGLSALLPALFSPAEEGFFL
FT ETRLFQFESSPRFLLDVDMADCLSRAWNKWPGIALTWWCWYIRDRVAPIHSLSTKYQLL
FT RGSALASLQN"
FT CDS 315. .1049
FT /db_xref="GOA:O73473"
FT /db_xref="UniProt/TrEMBL:O73473"
FT /gene="CP"
FT /product="27.0 kd virion capsid protein"
FT /protein_id="CAA12316.1"
FT /translation="MSTSKRKRGDDSNWNKRVSKKKPSSAGLKRAGSKADRPSLQIQTL
FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT
FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT DGRIGSDIPPSNGSWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT GNGLTFTAHGQTRLYFKSVGNQ"
FT CDS complement(387. .1007)
FT /db_xref="UniProt/TrEMBL:O73474"
FT /product="21.7 kd protein"
FT /protein_id="CAA12317.1"
FT /translation="MGSKCKAIAGGNDHVQSSSLDGTNSSVRYILPLRSHSQPTRELVE
FT VDVALARLPTSIRWRNVRTNPPVGLHVEQPTPFHHEAMTQLPAHLPCRRPGFEGVRVGK
FT YSLRGRSLSAGSGVIHQPHHTGSGVGVPAGCRVSNEVVVDGNLVRQSLAGVAVALVRSS
FT GIGVDEVTYASGGDRYHGGPGMLECLDLEGWPIGLAASPLQPS"
FT CDS 734. .1030
FT /db_xref="UniProt/TrEMBL:O73475"
FT /product="11.1 kd protein"
FT /protein_id="CAA12318.1"
FT /translation="MEGEPGAVSSLRGETALVVQHGDRRADWFGHSSIEWKLEALQAQH
FT LLPQVHEWVGSENAVEECNGRRSWCHPERSFVHGHCPRQWPYIYCPWADPSVL"
FT CDS complement(1200. .1661)
FT /db_xref="GOA:O73572"
FT /db_xref="UniProt/TrEMBL:Q77B33"
FT /gene="repB"
FT /product="17.6 kd RepB protein"
FT /protein_id="CAA12319.1"
FT /translation="MDGFCIQTSDEGSRKQSLYIVGPTRTGKSTWARSLGVHNYWQNNV
FT DWSSYNEDAIYNIVDDIPFKFCPCWKQLVGCQKDFIVNPKYGKKKKVQKKSKPTIILAN
FT SDEDWMKEMTPGQLEYFEANCTIYIMSPGEKWYSPRELPPTEAVHSDTS"
FT CDS complement(1556. .2374)
FT /db_xref="GOA:O73558"
FT /db_xref="UniProt/TrEMBL:Q77B32"
FT /gene="repA"
FT /product="31.5 kd RepA protein"
FT /protein_id="CAA12320.1"
FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK
FT YIICAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPY
FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML
FT LQPTCYTLEDAISDLQWMDSVSRHQMKDQESRASTSSGQQEQESLLGPEA"
XX
SQ Sequence 2685 BP; 675 A; 629 C; 686 G; 695 T; 0 other;
AJ225008 Length: 2685 September 14, 2004 08:36 Type: N Check: 1064 ..
1 ggatccacag aactccttgt atgtacagcc gcgggtaccc acagcagctc
51 cgacctccgc aggagtgccg tggagtcgcg taggcgaggt agctattttg
101 agctttgttg cattgatttg cttttacctg ctttaccttt gggtgctgag
151 agaccttatc ttagttctga aggctcgcca aggcagatcc acggaggagc
201 tgatatttgg tggacaagct gtggatagga gcaaccctat ccctaatata
251 ccagcaccac caagtcaggg caatcccggg ccatttgttc caggcacggg
301 ataagcaatc agccatgtcc acgtccaaga ggaagcgggg agatgattcg
351 aattggaata agcgggtttc taagaagaag ccttcttcag ctgggctgaa
401 gagggctggc agcaaggccg ataggccatc cctccaaatc cagacactcc
451 agcatgccgg gaccaccatg ataacggtcc cctccggagg cgtatgtgac
501 ctcatcaaca cctatgcccg aggatctgac gagggcaacc gccacaccag
551 cgagactctg acgtacaaga ttgccatcga ctaccacttc gttgctgacg
601 cggcagcctg ccggtactcc aacaccggaa ccggtgtgat gtggctggtg
651 tatgacacca ctcccggcgg acaagctccg accccgcaga ctatatttgc
701 ctacccggac accctcaaag cctggccggc gacatggaag gtgagccggg
751 agctgtgtca tcgcttcgtg gtgaaacggc gttggttgtt caacatggag
801 accgacgggc ggattggttc ggacattcct ccatcgaatg gaagttggaa
851 gccttgcaag cgcaacatct acttccacaa gttcacgagt gggttgggag
901 tgagaacgca gtggaagaat gtaacggacg gaggagttgg tgccatccag
951 agaggagctt tgtacatggt cattgccccc ggcaatggcc ttacatttac
1001 tgcccatggg cagacccgtc tgtactttaa gagtgttggc aaccagtaat
1051 gaataaaact ccgtttttat tatatttcat gaatgctgaa agcttacatt
1101 aatatgtcgt gcgatggcac gaaaaacaca cacaatcaat acaggggggt
1151 agtcggcggg cggctaaggg tggtgctccg cgggcaaaac atcgaaaaat
1201 caagatgtat ctgaatgtac tgcctccgta ggaggcagct cacggggaga
1251 ataccatttc tcccctggcg acataatgta aatggtgcag tttgcctcga
1301 aatactccag ctgccctgga gtcatttctt tcatccaatc ttcatccgag
1351 ttggcgagga ttattgtagg cttagacttc ttctgcacct tcttcttctt
1401 accatacttg gggttgacaa tgaaatcttt ctggcagcca actaactgtt
1451 tccaacaagg acagaattta aatggaatat cgtctacgat gttgtagatt
1501 gcgtcttcgt tgtatgaaga ccaatcaaca ttattttgcc agtaattatg
1551 aacccctagg cttctggccc aagtagactt tcctgttctt gttggcccga
1601 cgatgtagag gctctgcttt cttgatcctt catctgatgt ctggatacag
1651 aatccatcca ttggaggtca gagattgcat cctcgagggt ataacaggta
1701 ggttgaagga gcatgtaagc ttcgggactg acctggaaga tgttaggctg
1751 gagccaatca ttgattgact cattacagag taaatcaggt gaggagggtg
1801 gatgaggatt ggtgaactct tcctgaattt caggaaaaag tttatttgca
1851 gagtattcaa aatactgcaa ttttgtggac caatcatagg gaaactcttt
1901 ctggatcata gagaggtact cttccttgga ggtggagtgt gaaataatgt
1951 ctcgcattat ttcatctttt gaaggctttt tttcctttac ttctgaatca
2001 gattttccta ggaaggggga cttcctagga atgaaagtac ctctctcaaa
2051 catagccagc ggttccttga gaatgtaatc tctcaccctg ttgactgatt
2101 tggcactctg aatatttggg tgaaacccat ttatatcaaa gaaccttgag
2151 tcagatatcc ttaccggctt ctctgtctga agcaatgcat gtaaatgcaa
2201 acttccatct ttatgtgcct ctcgggcaca tataatatac ttgggtatcc
2251 aacgaacaac gagctcccaa atcatctgac aggcgatttc aggattttct
2301 gggcactttg gataggtaag gaacgtgtta gcgttcctgt gtgagaactg
2351 acggttggat gaggaggagg ccatatccga cgacggagga cgtggctaag
2401 tgatggcaga ttgggagctc tcaactctat aacaaccggt gcgccttcga
2451 aatccgccgc tcctcgtttt atactggttg taaatgggcc ggaccgggcc
2501 ggcccagcag gaaaagaagg cgcgcactaa tattaccgcg ccttcttttc
2551 ctgcgaggtc ccggtaggga ccgagcgatt tgatttaaag cttggtcctg
2601 ctttgtatga tttatctaaa gcagcctaat ctaaagaatc cggtcccggg
2651 cactataaat tgtctaacaa gttcgattca ctcat