Sequence of DPV Yam mosaic virus

Yam mosaic virus partial RNA for coat protein, isolate B14

ACC No: AJ244049

Dated: 2000-04-04 | Length: 1180 | CRC: -1355739184

                !!NA_SEQUENCE 1.0
ID   YMO244049  standard; RNA; VRL; 1180 BP.
XX
AC   AJ244049;
XX
SV   AJ244049.1
XX
DT   04-APR-2000 (Rel. 63, Created)
DT   04-APR-2000 (Rel. 63, Last updated, Version 1)
XX
DE   Yam mosaic virus partial RNA for coat protein, isolate B14
XX
KW   coat protein; cp gene.
XX
OS   Yam mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Bousalem M.;
RT   ;
RL   Submitted (27-APR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Bousalem M., Laboratoire de Virologie des Regions Chaudes (LPRC), Institut
RL   pour la Recherche et le Developpement (IRD), LPRC/CIRAD-IRD, BP.5035,
RL   Montpellier, 34032, FRANCE.
XX
RN   [2]
RP   1-1180
RA   Bousalem M., Douzery E.J.P., Fargette D.;
RT   "High genetic diversity, distant phylogenetic relationships and
RT   intraspecies recombination events among natural populations of Yam mosaic
RT   virus: a contribution to understanding potyvirus evolution.";
RL   J. Gen. Virol. 81:243-255(2000).
XX
DR   SPTREMBL; Q9IW84; Q9IW84.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /country="Benin"
FT                   /db_xref="taxon:41460"
FT                   /virion
FT                   /organism="Yam mosaic virus"
FT                   /isolate="B14"
FT   CDS             <109. .>1016
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9IW84"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="CAB86244.1"
FT                   /translation="ADTQPDDDSQTIDAGESVEVKNRGKDKVNAPSERGGSEQKFSIAK
FT                   DRNETDKAQSSGAGISTTRDRDIDAGTVGYVLPRLARKSLSNKMVLPMVRGKPILNLDH
FT                   LVKYEPAQVHLSNTRATQAQFDAWYMAIKGFYEFEDEQMGMIMNGLMVWCIENGTSPNL
FT                   SGMWTMMDGAEQVEYPLKPVIENAKPTFRQIMMHFSDAAEAYIELRNSKEPYMPRYGIQ
FT                   RNLRDYSLAKYAFDFLEITSKTPVRAREAHHQMKAAAIGNKAYKMFGFDGKVGSQEEDI
FT                   ERHAAGDVTKDMHSLLGMRGM"
XX
SQ   Sequence 1180 BP; 374 A; 212 C; 299 G; 295 T; 0 other;

AJ244049  Length: 1180  December 21, 2001 15:38  Type: N  Check: 2204  ..

       1  gctctctaca ctaatcaagc cccaactagt ggtgagttag ccaattatgt
      51  gcaacatata atggaggaat tttgcactga tgatgaagtg tgctatgtta
     101  gccatcaagc agacacacaa ccagatgatg atagtcaaac cattgatgct
     151  ggagaaagtg ttgaagtaaa gaacagagga aaagataaag tcaacgcacc
     201  atccgagcgt ggcggcagtg aacagaaatt ttctatagca aaagatagga
     251  atgaaacaga taaggcacaa tcaagtggtg ctggaatttc aacaactcgt
     301  gacagagaca ttgatgctgg aactgttgga tatgttctgc cgaggttggc
     351  taggaagagt ctcagcaaca agatggtact acccatggta cgaggaaagc
     401  cgatattgaa ccttgatcat cttgtcaaat acgaacctgc tcaagttcat
     451  ctatcgaata cacgagccac acaagcacaa ttcgacgcat ggtacatggc
     501  aattaaaggt ttttacgagt ttgaggatga gcagatgggc atgattatga
     551  atggactgat ggtatggtgc atagagaatg gtacctcacc aaatttatcc
     601  gggatgtgga caatgatgga cggtgcggag caggtggaat atccattgaa
     651  accggtcata gagaatgcca aacccacatt tcgtcagata atgatgcatt
     701  tcagtgacgc agctgaagcg tacattgaat tgcggaactc aaaagaaccg
     751  tatatgcccc gatacggtat tcagcgcaac ttgagggatt actcattggc
     801  caaatacgcg tttgacttct tagaaataac ttctaaaact ccagttcgag
     851  cgcgtgaggc ccaccatcag atgaaggcag cagctattgg aaacaaggct
     901  tacaaaatgt ttggatttga tggcaaagtg gggtcccagg aagaggatat
     951  agagagacac gctgcaggtg atgtcacgaa agacatgcac agccttttag
    1001  gcatgagagg tatgtagagt gttggttata tatcagatat atatataatt
    1051  ctgttatgcc tacctaatat atgttggttg caagcattct gtgcttgtga
    1101  gaagatgtat tctaatgttg cattttggag aaactcaaga gtgtctatga
    1151  catggaggtc tctttgatgt ggcggaggag