Sequence of DPV Yam mosaic virus

Yam mosaic virus partial RNA for coat protein, isolate BFC54

ACC No: AJ244051

Dated: 2000-04-04 | Length: 1144 | CRC: 2017866668

                !!NA_SEQUENCE 1.0
ID   YMO244051  standard; RNA; VRL; 1144 BP.
XX
AC   AJ244051;
XX
SV   AJ244051.1
XX
DT   04-APR-2000 (Rel. 63, Created)
DT   04-APR-2000 (Rel. 63, Last updated, Version 1)
XX
DE   Yam mosaic virus partial RNA for coat protein, isolate BFC54
XX
KW   coat protein; cp gene.
XX
OS   Yam mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1144
RA   Bousalem M.;
RT   ;
RL   Submitted (27-APR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Bousalem M., Laboratoire de Virologie des Regions Chaudes (LPRC), Institut
RL   pour la Recherche et le Developpement (IRD), LPRC/CIRAD-IRD, BP.5035,
RL   Montpellier, 34032, FRANCE.
XX
RN   [2]
RP   1-1144
RA   Bousalem M., Douzery E.J.P., Fargette D.;
RT   "High genetic diversity, distant phylogenetic relationships and
RT   intraspecies recombination events among natural populations of Yam mosaic
RT   virus: a contribution to understanding potyvirus evolution.";
RL   J. Gen. Virol. 81:243-255(2000).
XX
DR   SPTREMBL; Q9IW82; Q9IW82.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1144
FT                   /country="Burkina Faso"
FT                   /db_xref="taxon:41460"
FT                   /virion
FT                   /organism="Yam mosaic virus"
FT                   /isolate="BFC54"
FT   CDS             <109. .>980
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9IW82"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="CAB86246.1"
FT                   /translation="ADIQPEDDGQTIDTGASAGTKNKGKDKTNTPPEDRGEMSKAQSSG
FT                   DRAVTTHDKDIDAGTVGSVLPRLARKSLSNKMVLPMIRGRPILNLDHLVKYEPAQVHLS
FT                   NTRATQAQFETWYTALKSFYELEDEQMYMIMNGLMVWCIENGTSPNLSGMWTMMDGTEQ
FT                   VEYPLKPVIENAKPTFRQIMMHFSDAAEAYIELRNSKEPYMPRYGIQRNLRDYSLARYA
FT                   FDFLEITSKTPIRAREAHHQMKAAAIGNKVSKMFGFDGKVGSQEEDTERHAAGDVTRDM
FT                   HSLLGMRGM"
XX
SQ   Sequence 1144 BP; 364 A; 204 C; 285 G; 291 T; 0 other;

AJ244051  Length: 1144  December 21, 2001 15:38  Type: N  Check: 2215  ..

       1  gctctctaca ctaatcagtt accaactagt gatgagttgg ccaactatgt
      51  acagcacata atggaagagt tctgtaacga tgatgaggta tgctacgtta
     101  gtcatcaagc agacattcaa ccagaagacg atggtcagac tattgatact
     151  ggagcgagtg ctggtaccaa gaataaagga aaggacaaga ctaatacacc
     201  accagaggac agaggtgaaa tgagtaaagc acaatcaagt ggtgatagag
     251  ctgtaacaac tcatgacaaa gacattgacg ctggaactgt tggatctgtt
     301  ttgcctaggc tggctagaaa gagtcttagt aacaagatgg tgctacccat
     351  gatacgagga agaccaatat tgaatctcga ccatcttgta aaatatgagc
     401  cggctcaagt tcatttatca aatacacggg ctacacaagc acagtttgaa
     451  acatggtaca cggcgcttaa gagtttctat gaacttgaag atgaacaaat
     501  gtatatgatt atgaatggtc taatggtgtg gtgcatagag aatggaacct
     551  cacccaattt atccgggatg tggacaatga tggacggtac ggagcaagtg
     601  gaatatccat tgaaaccggt catagagaat gccaagccca catttcgtca
     651  aataatgatg cattttagtg acgcagctga agcgtacatt gaattgcgga
     701  actcgaaaga accgtatatg ccccgatacg gtattcagcg aaatttgagg
     751  gattactcac tggctagata cgcgtttgat ttcttggaaa tcacttctaa
     801  aacaccaatt cgagcgcgtg aagcacacca tcagatgaaa gcagcagcta
     851  ttgggaataa ggtttccaaa atgtttggat ttgatggcaa agtggggtct
     901  caggaagagg atacagagag acacgctgct ggtgatgtca cgagagacat
     951  gcacagcctc ttaggcatga gaggtatgta gagtgttagt tatatatcat
    1001  atatatatat aactctgtta cgcctaccta taatatgttg gttgcaagca
    1051  ttccgtgttt gtgagaagac gtattctaat gttgcatttt ggagaagctt
    1101  gagagtgtct atgacacgga ggtctctttg atgtggcgga ggag