Sequence of DPV Watermelon chlorotic stunt virus
Watermelon chlorotic stunt virus-[IR] segment A, complete sequence, clone WmCSV-IR-A
ACC No: AJ245652
Dated: 2006-11-14 | Length: 2752 | CRC: 1478142448
ID AJ245652; SV 1; circular; genomic DNA; STD; VRL; 2752 BP.
XX
AC AJ245652;
XX
DT 07-JAN-2000 (Rel. 62, Created)
DT 14-NOV-2006 (Rel. 89, Last updated, Version 7)
XX
DE Watermelon chlorotic stunt virus-[IR] segment A, complete sequence, clone
DE WmCSV-IR-A
XX
KW AC2 gene; AC3 gene; AC4 gene; AC5 gene; AV2 gene; capsid gene;
KW capsid protein; rep gene; rep protein.
XX
OS Watermelon chlorotic stunt virus-[IR]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2752
RA Kheyr-Pour A.;
RT ;
RL Submitted (04-AUG-1999) to the EMBL/GenBank/DDBJ databases.
RL Kheyr-Pour A., Institut des Sciences Vegetales, Centre National de la
RL Recherche Scientifique, Avenue de la Terrasse, Gif sur Yvette 91198,
RL France.
XX
RN [2]
RA Kheyr-Pour A., Bananej K., Dafalla G.A., Caciagli P., Noris E.,
RA Ahoonmanesh A., Lecoq H., Gronenborn B.;
RT "Watermelon chlorotic stunt virus from the Sudan and Iran: Sequence
RT comparison and identification of a whitefly-transmission determinant";
RL Phytopathology 90:629-635(2000).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2752
FT /organism="Watermelon chlorotic stunt virus-[IR]"
FT /segment="A"
FT /specific_host="Citrullus vulgaris"
FT /mol_type="genomic DNA"
FT /clone="WmCSV-IR-A"
FT /virion
FT /db_xref="taxon:223362"
FT rep_origin 1
FT /direction=RIGHT
FT /note="first base of viral (+) strand"
FT TATA_signal 119. .126
FT /note="of virion sense transcription"
FT CDS 155. .514
FT /gene="AV2"
FT /product="AV2 protein"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q9Q1R8"
FT /protein_id="CAB65501.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAVKYLQAVESTYEPNTLGHELIRDL
FT ILVLRARDYGEANRRYSHFHSRFEGSSKTELRQPLHEPCSCPHCPRHKQASTMGQQAHV
FT SKAQDVQDVSKPRCP"
FT CDS complement(219. .986)
FT /gene="AC5"
FT /product="AC5 protein"
FT /db_xref="InterPro:IPR006892"
FT /db_xref="InterPro:IPR013671"
FT /db_xref="UniProtKB/TrEMBL:Q9Q1R7"
FT /experiment="experimental evidence, no additional details
FT recorded"
FT /protein_id="CAB65502.1"
FT /translation="MILILRSLLVVVDHMIVHTIEAFYQRLLLHPRGATDHGGMKLSHN
FT LETIAKIVLNCRSAGLVVEHIKNLSEVHWTGPIWTTVTNKKEHDLIRMILFFNVLIHPD
FT LAKNVYRLHTKPFSDTMSDSTPPSNITDTPDDTGVLNVVSLFVRLNFAWAFAALRDIWA
FT SIHPVHPGLSIHGPVGPLSTLACDEDSGGKSTAHVGAVEVQFSTNLRNGSGNENISCSL
FT RHNHGPGGQELDRGSIRGPKYWARRSIQRPAST"
FT CDS 315. .1091
FT /gene="capsid"
FT /product="capsid protein"
FT /db_xref="GOA:Q9PX93"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q9PX93"
FT /protein_id="CAB65503.1"
FT /translation="MAKRTGDILISTPVSKVRRKLNFDSPYMSRALAPTVLVTSKRRQW
FT ANRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVVGGPSGMKEQALVKRFYRVYNHVVYNHQETAKYE
FT NHTENAMLLYMACTHASNPVYATLKIRIYFYDSVTN"
FT CDS complement(1088. .1492)
FT /gene="AC3"
FT /product="AC3 protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="InterPro:IPR008973"
FT /db_xref="UniProtKB/TrEMBL:Q9Q1R6"
FT /protein_id="CAB65504.1"
FT /translation="MDSRTGEYITADQAWNGVFTWTINNPLYFTIPDHHQRPFLCRHDI
FT INMQIRFNHNLRRALGIHKAFLNFRIWTTLRPQTGRFLRVFRTQVLKYLDMLGVISLNL
FT VVRAVSHVLENVLVGTIDVQENHVIKFDIY"
FT polyA_signal 1090. .1095
FT /note="of virion sense transcription"
FT polyA_signal complement(1103. .1109)
FT /note="of complementary sense transcription"
FT CDS complement(1233. .1640)
FT /gene="AC2"
FT /product="AC2 protein"
FT /db_xref="GOA:Q9Q1R5"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="InterPro:IPR009072"
FT /db_xref="UniProtKB/TrEMBL:Q9Q1R5"
FT /protein_id="CAB65505.1"
FT /translation="MPNSSSSQNLSSQPSIKIKHRLAKKKTIRRRRVDLKCGCSYYLHI
FT SCQNHGFSHRGIHYCGSSMEWRVYLDDKQPPIFHDTRPPPTPLSLPSRHNKHANTIQPQ
FT PSEGVGDSQSFPELPNLDDFTASDWSFLKGI"
FT CDS complement(1540. .2625)
FT /gene="Rep"
FT /product="Rep protein"
FT /db_xref="GOA:Q9Q1R4"
FT /db_xref="HSSP:P27260"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q9Q1R4"
FT /protein_id="CAB65506.1"
FT /translation="MRPPRFRIQAKNIFLTYPRCSLSKEELLSFLVGLSLPSNLKYVKV
FT CRELHQNGEPHLHVLLQFAGKITITDNRLFDHVHPSRSACFHPNIQSAKSSTDVKSYLD
FT KDGDTVEWGKFQIDGRSARGGQQTANDAYATALNMSNKGEAMSVIKELAPKDFVLHYHN
FT IKSNLDRIFEEPVAPFVCPFPMSSFTLLPPELVEWASTNVCSSAARPWRPKSIVVEGES
FT RTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ
FT SNTKYGKPIQIKGGIPTIFLCNPGPSSSYKEFLEEEKNYALKEWADKNAEFVFLSEPLF
FT SAEHQDQTQTRQKEDDSATTR"
FT CDS complement(2328. .2471)
FT /gene="AC4"
FT /product="AC4"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q9PX67"
FT /protein_id="CAB65507.1"
FT /translation="MGNLISMCSCSSPERSPSQTIASSIMYTQAVAPVSTPTYKALSPV
FT QT"
FT TATA_signal complement(2691. .2696)
FT /gene="Rep"
FT stem_loop join(2734. .2752,1. .13)
FT /standard_name="conserved hairpin"
FT /function="circularization of ss-DNA during replication"
FT /note="part of replication origin"
FT misc_feature join(2746. .2752,1. .2)
FT /standard_name="conserved nonanucleotide 'TAATATTAC'"
FT /function="part of Rep origin recognition site"
XX
SQ Sequence 2752 BP; 703 A; 624 C; 688 G; 737 T; 0 other;
aj245652 Length: 2752 14-NOV-2006 Type: N Check: 6885 ..
1 accggatgcc cgcggagcca aaaagtgacc ccacaggaca cgtgcaccaa
51 tgaaattgcg tgctttgagg taagttagct ggaaatggag ttttgaaagc
101 gacaagtcat acgagtcgta tttatactgc tgctgcggat caacttttgt
151 caggatgtgg gatccattgc ttaatgaatt tcccgagtcg gttcacggct
201 ttcggtgtat gctagctgtc aagtacttgc aggccgttga atcgacctac
251 gagcccaata ctttgggcca cgaattgatc cgcgatctaa ttcttgtcct
301 ccgggcccgt gattatggcg aagcgaacag gagatattct catttccact
351 cccgtttcga aggttcgtcg aaaactgaac ttcgacagcc cctacatgag
401 ccgtgctctt gcccccactg tcctcgtcac aagcaagcgt cgacaatggg
451 ccaacaggcc catgtatcga aagcccagga tgtacaggat gtatcgaagc
501 ccagatgtcc ctaagggctg cgaaggccca tgcaaagttc agtcgtacga
551 acaacgagac gacgttaagc acaccggtat cgtccggtgt gtcagtgatg
601 ttactagggg gagtggaatc actcatcgtg tcggaaaaag gttttgtgtg
651 aagtctatat acattcttgg caagatctgg atggatgaga acattaaaaa
701 acaaaatcat acgaatcagg tcatgttctt tcttgttcgt gaccgtcgtc
751 catatgggtc cagtccaatg gacttcggac aggtttttaa tatgttcgac
801 aacgagccca gcactgcgac agttaagaac gatcttcgcg atcgtttcca
851 agttatgcga aagtttcatg ccaccgtggt cggtggcccc tctgggatga
901 aggagcaggc gctggtaaaa cgcttctatc gtgtgtacaa tcatgtggtc
951 tacaaccacc aagagactgc gaagtatgag aatcatactg agaatgcgat
1001 gttattgtat atggcgtgta cacacgcatc gaatcctgtg tatgcaacat
1051 tgaaaattcg gatatatttt tatgactcag ttacgaatta ataaatatcg
1101 aattttatta cgtgattttc ttgtacatcg attgtcccaa caaggacatt
1151 ttccaataca tgacttacgg ccctaacaac caaattgaga ctaattacac
1201 ctaacatgtc gaggtatttt agaacctgcg ttctaaatac ccttaagaaa
1251 cgaccagtct gaggccgtaa agtcgtccag attcggaagt tcaggaaagc
1301 tttgtgaatc cccaacgccc tccgaaggtt gtggttgaat cgtatttgca
1351 tgtttattat gtcgtgacgg caaagaaagg ggcgttggtg gtggtctggt
1401 atcgtgaaat atagggggtt gtttatcgtc caggtaaaca cgccattcca
1451 tgcttgatcc gcagtaatgt attccccggt gcgagaatcc atgattctgg
1501 cacgagatat gcaggtaata tgagcaaccg cactttagat caacgcgtcg
1551 tcgccgaatc gtcttctttt tggcgagtct gtgtttgatc ttgatgctcg
1601 gctgagaaga gaggttctga gaggaagacg aattcggcat tcttatccgc
1651 ccactctttt agtgcatagt tcttctcctc ctctagaaac tctttatacg
1701 aagaagatgg gcccggattg caaaggaaga tagtgggaat tccgccttta
1751 atttgaatcg gctttccgta tttcgtgttg ctttgccaat cacgctgggc
1801 ccccatgaac tctttaaagt gctttagata atgcgggtcg acgtcatcaa
1851 tgacgttgta ccacgcatcg ttgctgtaga tctttggact caggtcaagg
1901 tgaccacata ggtaattatg tggtcctaat gatcgggccc acatcgtctt
1951 tcccgtacga ctctcaccct ctaccacgat actcttgggt ctccacggcc
2001 gcgcagcgga agagcaaacg ttcgttgatg cccactcaac gagctcaggc
2051 ggtagcaacg tgaaagacga catcggaaaa ggacaaacga aaggagccac
2101 aggttcttca aagattcgat ccaaatttga cttgatattg tggtagtgaa
2151 ggacgaagtc cttcggtgcg agctccttga tcacagacat agcctcccct
2201 ttattactca tgttaagcgc cgtggcgtag gcgtcgttag ctgtctgttg
2251 tccacccctt gcagatcgac cgtcgatttg aaacttgccc cactcgacgg
2301 tgtcgccgtc cttgtccagg taagacttca cgtctgtact ggacttagcg
2351 ctttgtatgt tggggtggaa acaggcgcta cggcttgggt gtacatgatc
2401 gaagaggcga ttgtctgtga tggtgatctt tccggcgaac tgcaggagca
2451 catggagatg aggttcccca ttctggtgca gttctctgca caccttgacg
2501 tattttaagt tcgacggaag ggagaggccg actaaaaagg aaagtagctc
2551 ttctttggag agagagcacc tgggatatgt gaggaaaatg ttttttgctt
2601 gtattctaaa acggggaggc ctcatgttga ccagtcaatt ggagacaccc
2651 cccagatcac taacccctgt atattggaga ctggagacaa tatatagaag
2701 tagtaagagg tactactagg attttgacac gtagcgggca tcctataata
2751 tt