Sequence of DPV Soybean mosaic virus

Soybean mosaic virus partial genomic RNA for viral polyprotein

ACC No: AJ293277

Dated: 2001-05-11 | Length: 1684 | CRC: 1868724650

                !!NA_SEQUENCE 1.0
ID   SMO293277  standard; RNA; VRL; 1684 BP.
XX
AC   AJ293277;
XX
SV   AJ293277.1
XX
DT   06-FEB-2001 (Rel. 66, Created)
DT   11-MAY-2001 (Rel. 67, Last updated, Version 4)
XX
DE   Soybean mosaic virus partial genomic RNA for viral polyprotein
XX
KW   coat protein; NIb replicase; viral polyprotein.
XX
OS   Soybean mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1684
RA   Adams M.J.;
RT   ;
RL   Submitted (07-SEP-2000) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [3]
RA   Chen J., Chen J., Adams M.J.;
RT   "A universal PCR primer to detect members of the Potyviridae and its use to
RT   examine the taxonomic status of several members of the family";
RL   Arch. Virol. 146:757-766(2001).
XX
DR   SPTREMBL; Q998S6; Q998S6.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1684
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:12222"
FT                   /virion
FT                   /organism="Soybean mosaic virus"
FT                   /isolate="Hangzhou"
FT                   /specific_host="soybean"
FT   CDS             <1. .1431
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q998S6"
FT                   /protein_id="CAC28537.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVIAMYYSCCKQGWSDEDIQERLVFFANG
FT                   DDIILAVSDKDTWLYDTLSISFAELGLNYNFDERTKRREELWFMSHKAMLVDGIYIPKL
FT                   EPERIVSILEWDRSKELMHRTEAICAAMIEAWGYTELLQEIRKFYLWLLSKDEFKELAS
FT                   SGKAPYIAETALRKLYTDVNAQTSELQRYLEVLDFNHADDCCESVSLQSGKEKEGDMDA
FT                   GKDPKKNASSSKGAGASSKDVNVGSKGKVVPRLQKITRKMNLPMVEGKIILSLDHLLEY
FT                   KPNQVDLFNTRATRTQFEAWYNAVKDEYELDDEQMGVVMNGFMVWCIDNGTSPDANGVW
FT                   VMMDGEEQIEYPLKPIVENAKPTLRQIMHHFSDAAEAYIEMRNSESPYMPRYGLLRNLR
FT                   DRELARYAFDFYEVTSKTPNRAREAIAQMKAAALSGVNNKLFGLDGNISTNSENTERHT
FT                   ARDVNQNMHSLLGMGPQQ"
FT   mat_peptide     <1. .633
FT                   /product="NIb replicase"
FT   mat_peptide     634. .1428
FT                   /product="coat protein"
FT   3'UTR           1432. .1684
XX
SQ   Sequence 1684 BP; 513 A; 296 C; 428 G; 447 T; 0 other;

AJ293277  Length: 1684  December 21, 2001 15:40  Type: N  Check: 7063  ..

       1  ggtaataata gtggtcagcc atccacagtt gtggacaata ccttgatggt
      51  ggtcattgcc atgtactact cgtgttgtaa gcaagggtgg tcagatgagg
     101  acatccaaga aaggttggtg tttttcgcca atggtgatga tattatcctg
     151  gcagttagtg ataaagatac atggttatat gacactctta gcatttcgtt
     201  cgctgagctt ggtctcaact acaactttga tgaacggaca aagagaagag
     251  aggagttatg gttcatgtca cacaaagcca tgttagttga tggaatctac
     301  attccaaaac ttgaacctga gagaattgtc tctattctag agtgggacag
     351  gagcaaagag cttatgcatc gcactgaggc gatatgtgca gcaatgattg
     401  aggcatgggg atacactgag ttgctacaag agattcgcaa gttctatttg
     451  tggctcttaa gcaaggatga atttaaggag ctcgcttcgt ctggaaaagc
     501  accatatatt gcagagacag ctttgagaaa gctgtataca gatgttaatg
     551  cgcagacaag tgagctacaa agatatcttg aggtactgga ctttaaccat
     601  gctgatgatt gttgtgaatc agtgtcctta caatcaggca aagagaagga
     651  aggagacatg gatgcaggca aagatccaaa gaagaacgcc agcagtagca
     701  aaggagctgg tgcgagcagt aaggatgtga atgttgggtc aaaagggaag
     751  gtggttccac gcctgcagaa gattacaagg aagatgaatc ttccaatggt
     801  tgaagggaag attatcctca gtttagacca cttgcttgag tataaaccta
     851  atcaagttga tttattcaat actcgggcaa caagaacaca gtttgaggca
     901  tggtacaatg cagtcaaaga tgaatatgaa cttgatgatg agcagatggg
     951  tgtcgtcatg aatggtttta tggtatggtg cattgataat ggcacgtctc
    1001  cagatgccaa tggtgtgtgg gtaatgatgg atggagagga gcagattgaa
    1051  tacccactga agcccatcgt tgaaaatgca aaaccaactc tgaggcaaat
    1101  catgcaccat ttctcagatg cagcagaagc ttacattgag atgagaaatt
    1151  ctgaaagtcc atatatgcct agatatggac tactgaggaa tttgagagat
    1201  agggagttag cccgttatgc cttcgatttc tatgaggtca cctccaaaac
    1251  accgaacagg gcaagagagg caatagcaca aatgaaggct gcagctctct
    1301  cgggagttaa caacaagctg tttgggcttg atggaaacat ctcgaccaac
    1351  tccgaaaata ctgaaaggca cactgcaaga gatgtgaatc aaaacatgca
    1401  ttctcttttg ggcatgggcc cacagcagta aaggctaggt aaactggcca
    1451  cagttatcat ttcgggtcgc tttatagttt actatagtat agtagttgca
    1501  cttcctttaa gtatagtgtg attgcatcac ctaataatac ttttgtttag
    1551  agtggtctaa ccaccttagt gtgctttata ttatagttta tgaatggcag
    1601  ggagaaccat tgcaatgccg gagccctttt caagagtgat tctatcatgc
    1651  atagtggccg aggtacggca atgtttgttg tcct