Sequence of DPV Cardamom mosaic virus

Indian cardamom mosaic virus partial cp gene for coat protein, genomic RNA, isolate Kursupara

ACC No: AJ308476

Dated: 2011-08-25 | Length: 1027 | CRC: -320237492

                
ID   AJ308476; SV 1; linear; genomic RNA; STD; VRL; 1027 BP.
XX
AC   AJ308476;
XX
DT   11-FEB-2001 (Rel. 66, Created)
DT   25-AUG-2011 (Rel. 109, Last updated, Version 4)
XX
DE   Indian cardamom mosaic virus partial cp gene for coat protein, genomic RNA,
DE   isolate Kursupara
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KW   coat protein; cp gene.
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OS   Indian cardamom mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Macluravirus.
XX
RN   [1]
RP   1-1027
RA   Usha R.;
RT   ;
RL   Submitted (07-FEB-2001) to the INSDC.
RL   Usha R., Plant Biotechnology, Madurai Kamaraj University, Palkalai Nagar,
RL   Madurai, Tamil Nadu 625021, INDIA.
XX
RN   [3]
RX   DOI; 10.1023/A:1011191614839.
RX   PUBMED; 11556406.
RA   Jacob T., Usha R.;
RT   "3'-Terminal sequence analysis of the RNA genome of the Indian isolate of
RT   cardamom mosaic virus: a new member of genus Macluravirus of potyviridae";
RL   Virus Genes 23(1):81-88(2001).
XX
RN   [4]
RA   Jacob T., Jebasingh T., Venugopal M.N., Usha R.;
RT   "High genetic diversity in the coat protein and 3 untranslated regions
RT   among geographical isolates of Cardamom mosaic virus from south India";
RL   J. Biosci. 28(5):589-595(2003).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1027
FT                   /organism="Indian cardamom mosaic virus"
FT                   /host="cardamom"
FT                   /isolate="Kursupara"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Kerala"
FT                   /tissue_type="leaves"
FT                   /db_xref="taxon:152006"
FT   CDS             <1. .822
FT                   /codon_start=1
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /function="virus coat"
FT                   /db_xref="GOA:Q998T5"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q998T5"
FT                   /protein_id="CAC29004.1"
FT                   /translation="APLAPMTQQANAGNQQQPAEGVNDQPQDLPSGEGEGGDDADIQWR
FT                   IPPTPKMLSHFHNPRIKGRRVWNRRIINSIAKEQFTQSSQLATTLQFEKWVESIRKSLG
FT                   TPNEGDFQIYLTSWCLWCANNGTSSEVDVNQNMEIHSGGLFSTIPISIFVEPAVQNGGL
FT                   RKIMRHLSDVTTQILAKGGKMTAWGTKRGYTQLAMIPYAFDFCVQTNGMPKTVREQLNQ
FT                   GKAAAIGSGHQRVMLLDGKVQRSRTSYERHVDTDVDEFEHGSAAEPRATLY"
XX
SQ   Sequence 1027 BP; 313 A; 212 C; 235 G; 267 T; 0 other;

aj308476 Length: 1027  25-AUG-2011  Type: N  Check: 8460  ..

       1  gcaccgcttg caccaatgac gcaacaggca aatgctggca accaacaaca
      51  gccagctgaa ggagtcaatg atcaacctca agatctacct tcaggtgaag
     101  gcgaaggtgg tgatgatgca gatattcaat ggagaatacc acccacgcca
     151  aagatgctga gccatttcca taacccacgc atcaaaggta gacgagtttg
     201  gaacaggaga atcataaata gcatcgcgaa agagcagttc acacaatcat
     251  cccagcttgc cacaactttg caatttgaaa aatgggttga aagcattcgg
     301  aaaagtcttg gcaccccaaa tgaaggcgac ttccagatct atttgacatc
     351  atggtgcctc tggtgtgcaa ataatgggac atcctcagaa gttgatgtga
     401  atcagaacat ggaaattcac tcaggtgggt tgttttcaac aatcccaata
     451  tctattttcg ttgagccagc agttcagaat ggagggctta gaaagattat
     501  gcggcatctt agtgatgtga ccacacagat acttgcaaaa ggaggaaaaa
     551  tgacggcatg ggggaccaaa agaggctaca cacagcttgc aatgatcccc
     601  tatgcttttg atttttgcgt tcaaacaaat ggaatgccaa aaacagttcg
     651  tgaacaatta aatcaaggga aggcagctgc tattgggtct gggcaccaac
     701  gtgttatgct gcttgatgga aaggtgcagc gtagtagaac aagttacgag
     751  agacacgtcg atactgatgt tgacgaattt gaacatggat cggctgctga
     801  accacgcgca acactgtatt agtcataatt ttgtgctatt actttgtgct
     851  tttaattttt agactgtttt tactctcttt acataatgtc tacacctaca
     901  agttcaatgg gagtttttgt gggttttctc ccaacgcttg gcaaccctca
     951  gtgtagtggc taagattgct ctggatgagc atctgacaac atacaatgtt
    1001  gtttatccta ttaccataga aggttat