Sequence of DPV Grapevine fleck virus
Grapevine fleck virus complete genome, isolate MT48, genomic RNA
ACC No: AJ309022
Dated: 2005-04-15 | Length: 7564 | CRC: -2034195342
!!NA_SEQUENCE 1.0
ID GFL309022 standard; genomic RNA; VRL; 7564 BP.
XX
AC AJ309022;
XX
SV AJ309022.1
XX
DT 04-JAN-2002 (Rel. 70, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Grapevine fleck virus complete genome, isolate MT48, genomic RNA
XX
KW coat protein; complete genome; cp gene; ORF3; ORF4; rep gene; replicase.
XX
OS Grapevine fleck virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymoviridae;
OC Maculavirus.
XX
RN [1]
RP 1-7564
RA Sabanadzovic S.;
RT ;
RL Submitted (29-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL Sabanadzovic S., Plant Protection, Istituto Agronomico Mediterraneo, Via
RL Ceglie 9, 70010 Valenzano (BA), ITALY.
XX
RN [2]
RX MEDLINE; 21351056.
RX PUBMED; 11458008.
RA Sabanadzovic S., Abou Ghanem-Sabanadzovic N., Saldarelli P., Martelli G.P.;
RT "Complete nucleotide sequence and genome organisation of Grapevine fleck
RT virus";
RL J. Gen. Virol. 82(Pt 8):2009-2015(2001).
XX
FH Key Location/Qualifiers
FH
FT source 1. .7564
FT /country="Italy"
FT /db_xref="taxon:103722"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Grapevine fleck virus"
FT /isolate="MT48"
FT 5'UTR 1. .291
FT CDS 292. .6141
FT /db_xref="GOA:Q8UZB6"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="InterPro:IPR001788"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="InterPro:IPR008043"
FT /db_xref="UniProt/TrEMBL:Q8UZB6"
FT /gene="REP"
FT /product="replicase"
FT /protein_id="CAC84400.1"
FT /translation="MVLTLCFHSDRDHHFLSTLPLAEIRRLAPGGFSVFVPEDLLPHLS
FT PSPSCPTPPLPRELTWSAACNPTNFPHLFRHHRPPPPCTRLTPRPPPPTPAPPSASTLP
FT RVFHGGAPPAAFQPAIDFLHNTIQKDTIASSIIAALNPSLTSSLTLYPYALPPRWPSAL
FT NQAGIPATSYGHQSHPHPIHKTIETHLLHEHWANRATLPSTVMFMKRSKFDKLRVSNAA
FT LVKSASNFLHLLNPILTARDADRYTHLPLPDTLPSTPLYFMHHSLMYFSPSQIAGLFLA
FT APFLERLYASLVLPAESTIGSHPFFPSLYRYRTTGEHLHYVLEGNPSSSYTQPLTATQW
FT LTTSSITAGDLHLTVTVLESWFSVHSILITRGVRPLELPRDIISLPSPDAVLLPNPSAF
FT DIPLRSRLVPRDVCESLFVYVRAVRTLRTTDPAGFIRTQSNKAEFDWVTAEAWDHLAQF
FT ALLTAPVRPNTYFLPLLSPLAVVRHWLFRKQRPIFATLTLLSASTAAAIPIAIARLRTH
FT SVTQLTILGHHFTPPKILARLPVALKRLIPKRLLPHLPSHLRPPPSWSPVFTLTFSELP
FT KARFLTFPISGQTHTLLRQLHVPAILFAPQRPSRPLIFAGLLIGTVPVLYGAYRWFVSR
FT FDPQTVYNRYSDLLHRPTWHLTFEREPLSCFPTPFLPHPSSHPRRARRLPPLPPAPPLP
FT PQPPPPPPPQPSPHPPLFPASIPSPPPRPSSPPPPATSPASTPALTPIPAPKTAPPLTF
FT PSPTLVAEPDAPVTARPSPLPLAPSRPFSELYPGHYADHSGSFFLQQPLVASSVPYPAL
FT DCLLVSCSAASGIPKEDLWATLCHIFPPSDLVSDLGLSTNHLTALAFTYQWLVTLRSGE
FT LVQRHGLLSAPFAFEITHTPPVPPATVGHFALSAPLTPTSACLTGGAPSPVISGPKASA
FT SLPRARFGPRPEAPRPPLTPPGFTPITEPTPATSPFALAALRFRLNRQPLPIRQVHAYS
FT IALPRAKNLVSNLKNGFDGLVSSLPASDRTNLLPLIQALDHTADFPPARPPVGLIHIAG
FT FAGCGKSYPIQQLLATQTFRHFRVVTPTTELRHEWKRALKLEGPSSWRVSTWETALAKR
FT ASVLVIDEVYKLPRGYLDLALLADPTVEFVIILGDPLQGSYNPTNPDSSNHRLIPEEDH
FT LRPFIDFYCLWTRRLPRLVADFFGVPTTNPTRGHLAFASLNTTQSPLLVPSDSMARALT
FT AGGHRAITYAASQGSTYPAPVHIFLDRNSNLVTNHVALVALTRSRSGVHFRPRAQDLPR
FT HPQHLFTAFYKYAIDLLAHEADPSKPRPTPVDVTLLFQQQLRGLTILRDPSFSRITGGA
FT THAFLAHAPLFTNLHGLRPTTFPDNLPTAPTYLARSLPYHQTESYPTSALPHRVFPAST
FT TDWSAADDHPRVNPTFVAETRLPLQSELAPTLPSQPEPSPTYHSPATFETVYPGVDGEA
FT LARTFLAATDPLELEIFFRNNWSNQFPFINRPDTVACNPLTLVAPTHNQKQDPTLLHAS
FT LAKRLRFRDSTAPYTITAKDQALGYILYHSLQRAYCRSPEPVPFDPVLFASCIAENDFA
FT QLTSKTQATIQANAFRSDPDWRHTFVRIFSKTQHKVNENSLFTSWKACQTLALMHDYLI
FT LVLGPVKKYQRILDSRDRPAHLYIHAGQTPHQLSEWCQNHLTPSVHLANDYTAFDQSQH
FT GEAVVLEAWKMRRASIPEPFITLHVHVKTNIECQFGPLTCMRITGEPGTYDDNTDYNLA
FT ILYTQYLLHRTPVLVSGDDSLVDRVPPMNPSWPALAPLFALKPKPETSPFGLFCGYFVG
FT PAGAVRAPRALFAKLAIALEDGSLPEKIASYVAEFSVGQSLGDSLWSLIPPELVIYQSA
FT CFDLICRHASPQLKLALRLGEVPDWGSLLSQLKLRFLTRPLFALLDAHTRVMVRTHKAH
FT LLPSGHALHPSTEPFY"
FT CDS 6367. .7059
FT /db_xref="GOA:Q8UZB5"
FT /db_xref="HSSP:1DDL"
FT /db_xref="InterPro:IPR000574"
FT /db_xref="UniProt/TrEMBL:Q8UZB5"
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="CAC84401.1"
FT /translation="MSLPADLLLGAISSLLRNPPTSDAASPSADQPAVSSSRSDSRLVS
FT APLPAAPPAPTAIARNPRVSIHLPFQFLWYDITGTESSYTSLSIASRPEVVTVARPYRH
FT ARLTSLEAFVQPTASSATYPQTVDLCWTIDSVTPARSEILSVFGAQRIAWGSVHFSAPI
FT LLPAELSSLNPTIKDSVTYTDCPRLTCGFYRNDACVALGSSAPICGSILIRGVIECSAP
FT INRPTPSS"
FT CDS 6590. .7519
FT /db_xref="GOA:Q8UZB4"
FT /db_xref="InterPro:IPR003882"
FT /db_xref="UniProt/TrEMBL:Q8UZB4"
FT /note="ORF3"
FT /product="hypothetical protein"
FT /function="unknown"
FT /protein_id="CAC84402.1"
FT /translation="MTSRAPSPPTPPCPSPPALKSSPSPVPTATPASPPLKPLSNPLPP
FT PPPTPRPSTSAGPSTPLPPPALRSSPSSALNASRGAPSTSPPPSSSPPSSPASTPPSRT
FT PSPTPTAPASPVASTAMTPASPSVPPPPSAAPSSSAALSSAPPPSTAPLPRHEPRPPPP
FT LPPPLQPPPGVRVPRSVAFPLPLARELPPLRLPPAPYLHPLLARLAPLRLRPPPDLPSP
FT PLSPPLSPPLSPISPLHAPAPPPHPDPVLLPALSLAISRAAPDLLRLLSLLSPPSLFLL
FT FTLLSIHFSPFPIFILLSLLLLLQFPRT"
FT CDS 7056. .7529
FT /db_xref="UniProt/TrEMBL:Q8UZB3"
FT /note="ORF4"
FT /product="hypothetical protein"
FT /function="unknown"
FT /protein_id="CAC84403.1"
FT /translation="MNRGPPLRSRPPSSPPPASAFPGPSPFPSPSPANSLPSASPPPPT
FT CTPSSPVSRPFASARLRTSHPPRCPHRSAPPSAPSPPFTPPHPLPTPTPSSSPRSPWLS
FT LAPLPTSSASLASFPPPPSSFSSPSSPSTSPLSPSSSSFPSSSSFSFLVPSNS"
XX
SQ Sequence 7564 BP; 1054 A; 3774 C; 1236 G; 1500 T; 0 other;
AJ309022 Length: 7564 April 19, 2005 08:53 Type: N Check: 1261 ..
1 gcacattagt actgaccacc agcccgactt tgacgccacc ctgtccaagt
51 ccggcccgtg ctcactcttt tgtttttctt tgttcttttc ccctgctccc
101 acgttcgacg acctcgcggc cgtcctcctc gcttcgtgct ctgcatcctt
151 taacttcctc cccctcttcc tcctcgccct ttcctttctc atccacctcc
201 ctcccaacct ctcttcctcc cttcactctc ttcttcttgc ttttcccttt
251 ctcttcttct ttcttcctcc tgctctcccc atcctcccgc catggtgctc
301 acgctctgct tccactcgga ccgtgaccat cacttcctct ccaccctccc
351 cctcgccgag atcagacgtc tcgcgccagg cggcttctcc gtcttcgtcc
401 ctgaagacct cctcccccac ctctccccct ccccctcctg ccccaccccc
451 ccccttcccc gcgagctcac ctggagcgcc gcttgcaacc ccaccaactt
501 cccccatctc tttcgccacc accgcccacc ccccccctgc acccgcctta
551 ccccccgccc cccccccccc actcctgccc ctccctcagc ctccaccttg
601 ccccgtgtct tccacggcgg cgccccccca gccgccttcc aacccgcgat
651 cgacttcctt cacaacacaa tccagaagga tacgatcgcc tcctccatca
701 ttgccgccct caacccttcc ctcacctcct ccctcaccct ctacccctac
751 gcgctccccc cgcgctggcc ctccgccctc aaccaagccg gcatccccgc
801 cacttcctac ggccaccaat cccaccccca cccaatccac aagaccattg
851 aaacccatct cctccatgag cattgggcca accgtgcgac tctcccgtcc
901 acggtcatgt tcatgaagag gtcgaagttc gacaagctcc gcgtctccaa
951 cgcggctctc gtcaaatcgg cctcaaactt cctccacctc ctcaacccca
1001 tcctcaccgc ccgggacgcc gaccggtaca cccacctccc cctccccgac
1051 accctcccct ccacccctct ctacttcatg catcattccc tcatgtactt
1101 ctcgcccagc caaattgccg ggctcttcct cgccgccccc ttcctcgaga
1151 ggctctacgc ctctctcgtc ctcccggccg aatccaccat cggcagccac
1201 cccttcttcc cctctctgta ccgctaccgc accaccggcg agcacctcca
1251 ttacgtgctc gaaggcaacc catcctcctc ctacacccag cccctcaccg
1301 ccacccagtg gctcaccacc tcctccatca ccgccggcga cctccacctc
1351 accgtcaccg tcctcgagtc atggttctcc gtgcactcaa tcctcatcac
1401 ccgcggtgtt cgccccctcg agctgccccg cgacatcatc tccctgccct
1451 cccccgacgc cgtcctcctc cccaacccct ctgccttcga catccccctc
1501 cgctcccggc tcgttccccg cgacgtctgc gaatcgctct tcgtttacgt
1551 ccgcgccgtc cgtaccctcc gcaccaccga ccccgccggc ttcattcgaa
1601 cccagtccaa caaggctgag ttcgactggg tcaccgccga ggcctgggac
1651 cacctcgccc agttcgccct cctaaccgcc cccgtccgcc ccaacaccta
1701 cttccttcct ctcctctccc cgctcgccgt cgtccgccat tggctctttc
1751 gcaagcaaag gccaatcttc gccaccctca ccctcctctc cgcgtcaacc
1801 gccgccgcca tccccatcgc catcgcccgc ctccgcaccc attcggtcac
1851 ccagctcacc atcctcggcc accatttcac cccccccaag atcctcgctc
1901 gccttcccgt cgccctcaag cgcttaatcc caaagcgcct gctcccccac
1951 ctcccatccc acctccgccc ccccccttcc tggtccccgg tcttcaccct
2001 caccttctcc gagctcccca aagcccggtt cctcaccttc cccatctccg
2051 gccaaaccca caccctcctc cgacagctcc atgtccctgc catcctcttc
2101 gccccccaac gccccagccg ccccctcatc ttcgcgggcc tgctcattgg
2151 gactgtccct gttctgtacg gggcctaccg atggttcgtc tcccgcttcg
2201 acccccagac ggtgtacaac cgttactctg accttcttca ccgccccaca
2251 tggcacctca ccttcgagcg tgagcccctc agctgcttcc caaccccctt
2301 tctgccccac cccagctccc accccagacg agcgcgtcgg ctcccccccc
2351 tcccgcccgc cccacccctt ccaccccagc cgccaccgcc cccccccccc
2401 caaccatccc cacacccccc cctcttcccc gcttcaatcc cgtcgcctcc
2451 gccccgcccg tcctcaccgc ccccccccgc cacctccccc gcctccaccc
2501 cggccctcac tcccatcccg gcgccgaaga ccgccccacc ccttaccttc
2551 ccctccccca ccctcgtcgc tgagcccgac gcccccgtca ccgcccgccc
2601 cagtcctctt cccctcgccc ccagccgccc cttctccgag ctctaccccg
2651 gccactacgc cgatcattca ggctccttct tcctccagca gcccctcgtc
2701 gcctcctccg tcccctaccc cgccctcgac tgccttctgg tctcctgctc
2751 cgctgccagc ggaatcccaa aggaagacct ctgggccacc ctttgccaca
2801 tctttccccc cagtgatctc gtctccgacc ttggcctctc caccaaccat
2851 ctcaccgccc tcgccttcac ctaccagtgg ctggtcactc tccgctcagg
2901 agagttggtc cagcgccacg gcctcctctc cgcccctttc gcctttgaga
2951 tcacccacac cccacccgtt cctcccgcca ccgtcgggca cttcgccctc
3001 tccgcccccc tcacccccac ctccgcttgc ctcaccgggg gcgccccttc
3051 cccagtcatc tccggcccca aggcctccgc ctccctcccc cgcgcccgct
3101 ttgggcctcg ccctgaagct ccccggcctc ccctgacccc ccctggcttc
3151 actcccatca ccgagcccac ccctgccaca tccccgttcg ccctcgccgc
3201 cctccgcttc cggctcaacc gccagcccct cccgatccgc caagtccacg
3251 cctactccat cgccctccct cgcgccaaaa acctcgtctc caatctcaag
3301 aacggattcg acggtctcgt ctcctccctc cccgcctccg accgcaccaa
3351 cctcctcccc ctcatccaag cccttgatca caccgccgac ttccctcccg
3401 cccgcccccc cgtcggcctc atccacatcg ccggcttcgc tggctgcggt
3451 aagagctacc ccatccagca actgctcgcc acccagacct tccgccactt
3501 ccgcgtcgtc acccccacca ctgagcttcg ccacgaatgg aaacgtgcgc
3551 tcaagctcga aggcccctcc tcttggcgcg tctccacctg ggagacagcc
3601 ctcgcgaagc gtgcttcggt ccttgtcatc gacgaggtct acaagctccc
3651 tcgcgggtac ctcgaccttg cccttctcgc cgaccccacc gtcgagttcg
3701 tcatcatcct cggcgacccc ctccaaggat cctacaaccc caccaacccc
3751 gactcttcca accaccgcct catccccgaa gaagaccacc tccgcccgtt
3801 catcgacttc tattgtctgt ggactcgccg cctcccccgc ctcgtcgccg
3851 acttcttcgg cgtacccacc accaacccca ctcgcggtca cctcgccttc
3901 gcctccctca acaccactca atcccctctc ctcgtcccct ccgactccat
3951 ggcccgagcc ctcactgctg gcggccaccg cgccatcacc tacgccgcct
4001 cccaaggttc cacttacccc gcccccgtcc acatcttcct tgaccgcaat
4051 tctaacctcg tcaccaacca tgtcgccctc gtcgccctta cccgttcccg
4101 ctctggcgtc cacttccgcc cccgcgccca ggacctccct cgccaccccc
4151 agcacctctt caccgcgttc tacaagtacg cgatcgacct cctcgcccac
4201 gaagccgatc cctccaagcc ccgccccacc cccgtcgacg tcacgctgct
4251 cttccaacag cagctccgcg gcctcaccat cctccgtgac ccctccttct
4301 cccgcatcac cggtggcgcc acccacgcct tcctcgccca cgccccactc
4351 ttcaccaacc tccacggcct ccgccccacc accttcccgg acaaccttcc
4401 caccgccccc acctacctgg cccgttccct cccctaccac cagaccgagt
4451 cctaccccac ctcagccctc ccgcaccgtg tcttccccgc ctccaccacc
4501 gactggtcag ccgccgacga ccatccccga gtcaacccca ccttcgtcgc
4551 cgagacccgc ctccccctcc agagtgaact cgcccccacc ctcccatccc
4601 aaccagaacc ttccccgacc taccactccc ccgccacctt cgagaccgtc
4651 taccctggag tggacggcga agccctcgcc cgcaccttcc ttgccgccac
4701 cgacccgttg gagctggaga tcttcttccg caacaactgg tccaaccagt
4751 tccccttcat caaccgcccc gacaccgtag cctgcaaccc tctcaccctc
4801 gtcgccccca cccacaacca aaagcaagac cccaccctcc tccacgcttc
4851 cctcgccaag cgtctccgct tccgcgactc cacagccccc tacaccatca
4901 ccgccaagga tcaagcctta ggctacatcc tttaccactc cctccagcgc
4951 gcctactgcc gttcccccga gcccgtcccc ttcgacccag tcctcttcgc
5001 gtcctgcatc gcggagaacg acttcgccca gctcacctcc aaaacccaag
5051 ccaccatcca agccaacgcc ttccgctccg acccggattg gcgtcacacc
5101 ttcgtccgca tcttctcgaa gacccagcac aaggtcaacg agaactctct
5151 tttcacctct tggaaagcct gccagaccct cgccctcatg catgattact
5201 tgatcctggt cctcggccca gtgaaaaagt atcagcgcat cctcgacagc
5251 cgagaccgcc ccgcccatct ctacatccac gccggccaga ccccccacca
5301 actttccgag tggtgccaaa accacctcac tccctccgtc cacctcgcca
5351 atgactacac ggccttcgac caatcgcagc acggtgaagc cgtcgtgctc
5401 gaggcttgga agatgcgccg cgcctccatt cctgaacctt tcatcaccct
5451 ccacgtccac gtgaagacca acatcgaatg ccaatttggc cctctcacgt
5501 gcatgcgcat caccggtgaa ccaggcacct acgacgacaa caccgactac
5551 aacctggcca tcctctacac ccagtacctc ctccaccgca cccccgtcct
5601 tgtgtccggc gatgactccc tcgtcgaccg cgtccccccc atgaaccctt
5651 cttggcctgc cctcgccccc ctcttcgccc tcaagcccaa acccgagacc
5701 tcccccttcg gccttttctg cggttacttc gtcggccccg ccggcgccgt
5751 ccgcgccccc cgcgcccttt tcgccaagct cgcgatcgcc ctcgaggacg
5801 gctctctgcc cgagaaaata gcgtcttacg tcgctgagtt ctcggtcggt
5851 cagtccctcg gcgactccct ttggtccctc atcccccctg aactggtcat
5901 ctaccagtca gcctgctttg acctcatctg ccgccacgcc tctccccagc
5951 taaagctcgc cctccgtctc ggtgaggtcc ccgactgggg gtctctcctc
6001 tcccagctca agctccgctt cctcacccgc cccctcttcg ccctcctcga
6051 cgctcacact cgcgtcatgg tccgcaccca caaggctcac ctcctcccct
6101 ccggccacgc cctccacccc tccaccgagc cattctacta gcctacttgc
6151 gtgttgttgt tccaatgaca ccacgtcgcc cctcctcgcc atcctcgtcc
6201 ttctcatcgt cgttctagcc tcagccctct tctgcgccct cttcgccctc
6251 taccgtgtcg ccatccacca gaccgtcctc tcctccccgt ccttcgctcc
6301 cccctccccc gtcccgctct agcatccccc ccctccgcat ccccaagccc
6351 ctctccgcct cgtctgatga gcctccccgc tgacctcctc cttggcgcca
6401 tctcctccct cctccgcaat ccccccacgt ctgatgccgc ctctccgtct
6451 gctgaccagc ctgctgtctc tagctctcgc tctgactctc gcttggtcag
6501 cgctccgctc cctgctgcgc cacccgcccc gaccgctatt gcccgcaacc
6551 ctcgtgtaag catccatctc cccttccagt tcctgtggta tgacatcacg
6601 ggcaccgagt cctcctacac ctccctgtcc atcgcctccc gccctgaagt
6651 cgtcaccgtc gcccgtccct accgccacgc ccgcctcacc tcccttgaag
6701 cctttgtcca acccactgcc tcctccgcca cctaccccca gaccgtcgac
6751 ctctgctgga ccatcgactc cgttaccccc gcccgctctg agatcctctc
6801 cgtcttcggc gctcaacgca tcgcgtgggg ctccgtccac ttctccgccc
6851 ccatcctcct ccccgccgag ctctccagcc tcaaccccac catcaaggac
6901 tccgtcacct acaccgactg cccccgcctc acctgtggct tctaccgcaa
6951 tgacgcctgc gtcgccctcg gttcctccgc ccccatctgc ggctccatcc
7001 tcatccgcgg cgttatcgag tgctccgccc ccatcaaccg ccccactccc
7051 tcgtcatgaa ccgaggcccc cccctccgct cccgcccccc ctccagcccc
7101 cccccggcgt ccgcgttccc cggtccgtcg cctttcccct ccccctcgcc
7151 cgcgaactcc ctcccctccg cctccccccc gccccctacc tgcaccccct
7201 cctcgcccgt ctcgcgcccc ttcgcctccg cccgcctccg gacctcccat
7251 cccccccgct gtccccaccg ctcagccccc ccctcagccc catctccccc
7301 cttcacgccc ccgcaccccc tccccacccc gaccccgtcc tcctccccgc
7351 gctctccctg gctatctctc gcgccgctcc cgacctcctc cgcctcctta
7401 gcctcctttc ccccccctcc ctcttccttc tcttcaccct cctctccatc
7451 cacttctccc ctttccccat cttcatcctc ctttccctcc tcctcctcct
7501 tcagtttcct cgtacctagc aatagctaga ggtagccggt ttctcactcc
7551 ggcctttctt tctg