Sequence of DPV Turnip mosaic virus

Turnip mosaic virus partial genomic RNA for polyprotein

ACC No: AJ310206

Dated: 2002-06-03 | Length: 1709 | CRC: 1655411276

                !!NA_SEQUENCE 1.0
ID   TMO310206  standard; RNA; VRL; 1709 BP.
XX
AC   AJ310206;
XX
SV   AJ310206.1
XX
DT   06-FEB-2002 (Rel. 70, Created)
DT   03-JUN-2002 (Rel. 72, Last updated, Version 2)
XX
DE   Turnip mosaic virus partial genomic RNA for polyprotein
XX
KW   coat protein; NIb protein; ORF1; ORF2; ORF3; polyprotein.
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1709
RA   Adams M.J.;
RT   ;
RL   Submitted (28-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [3]
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Variation between Turnip mosaic virus isolates in Zhejiang province, China
RT   and evidence for recombination";
RL   J. Phytopathol. 150:142-145(2002).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1709
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:12230"
FT                   /virion
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="R3"
FT                   /specific_host="Radish"
FT   CDS             <1. .1500
FT                   /codon_start=1
FT                   /note="ORF1"
FT                   /product="polyprotein"
FT                   /protein_id="CAC84449.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAVNYSLRKSGIPNELRDNLIRFFVNG
FT                   DDLLLGVHPKYEYVLDTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKL
FT                   EPERIVSILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPYSSLAQ
FT                   EGKAPYIAETALRKLYLDKEPAQEDLTQYLQAIFEDYEDGTEVCVYHQAGETLDAGLTE
FT                   EQKQAEKEKKERERSEKERERQRQLALKKGKNAAQEEGERDNEVNAGTSGTFSVPRLKS
FT                   LTSKMRVPKYEKRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKM
FT                   QIILNGLMVWCIENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVA
FT                   EAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALR
FT                   GANNNLFGLDGNVGTTVESTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1. .633
FT                   /note="ORF2"
FT                   /product="NIb protein"
FT   mat_peptide     634. .1497
FT                   /note="ORF3"
FT                   /product="coat protein"
FT   3'UTR           1501. .1709
XX
SQ   Sequence 1709 BP; 541 A; 340 C; 427 G; 401 T; 0 other;

 AJ310206  Length: 1709  June 18, 2002 10:23  Type: N  Check: 7666  ..

       1  gggaacaata gcggccaacc gtcaacagtc gtggacaaca cgctcatggt
      51  catattagca gtcaactact cactcaggaa gagtggaatt ccaaatgaat
     101  tgcgtgataa cctcatcagg tttttcgtca atggagatga cttgctgcta
     151  ggcgtacatc caaagtacga gtatgtcctt gacactatgg cggataattt
     201  ccgtgaactg ggcttgaaat ataccttcga ttcaagaacc agagaaaaag
     251  gtgacctttg gtttatgtcg caccaaggac acaaaagaga agggatctgg
     301  atccccaagc tggaaccaga gcgaatagta tcgatcctag agtgggatcg
     351  atcaaaagag ccatgccacc gacttgaggc aatctgcgca gcaatgattg
     401  aatcgtgggg atatgataaa ttgacccatg aaatacgcaa gttttatgca
     451  tggatgatcg aacaggctcc atatagctct ctagcacaag agggaaaagc
     501  tccttacata gcggaaacgg cactaaggaa actttacctt gacaaagaac
     551  cagctcaaga agatcttact caatacttac aagcaatctt cgaagattac
     601  gaagatggta ctgaagtgtg tgtttatcac caggcaggtg agacgcttga
     651  tgccggtcta acagaagagc agaagcaggc tgaaaaggag aagaaggaga
     701  gagagagatc agagaaagag cgagaaaggc aaagacagct agcgcttaag
     751  aaaggcaaaa acgcagcaca agaagagggc gaacgtgaca atgaagtaaa
     801  cgccggaact tccggaactt ttagcgtgcc tagactcaaa agtcttacaa
     851  gcaaaatgcg tgtgccgaag tatgagaaaa gagttgctct caacctcgat
     901  catttgatct tatacacgcc ggagcagaca gatttatcca acacgcgttc
     951  aacgcggaag cagtttgaca cttggtttga aggtgtcatg gctgactatg
    1001  agctaacgga ggataaaatg caaataattc tcaatggttt aatggtctgg
    1051  tgcattgaga atggaacctc cccgaacata aacggaatgt gggtgatgat
    1101  ggacggagat gatcaggtgg aattcccgat caagccgctc attgaccacg
    1151  ccaaacccac atttaggcaa ataatggccc atttcagtga cgtagctgaa
    1201  gcgtacattg aaaagcgtaa ccaggaccga ccatacatgc cacgatatgg
    1251  tcttcagcgc aatttaaccg acatgagctt agctcgttac gcgtttgatt
    1301  tctatgaaat gacttctaga actccaatac gtgcgagaga ggcacacatc
    1351  cagatgaaag cagcagcact gcgtggcgca aataataatt tgttcggctt
    1401  ggatggtaac gtcggcacaa cggtagagag cacggaaagg catacgaccg
    1451  aagacgttaa tcggaacatg cataacttac ttggcgttaa ggggttatga
    1501  agttgtatgc tagtagacta taagtagtta agtttactcg ttagtattct
    1551  cgcttatggg aaatatgtaa gtttgttaaa gcagccagtg tgacttcgtc
    1601  atgtgtgttg ttgttacttt ctatattttc gccgaacttt ttattggtgt
    1651  tagcgcatgt ggtgagatac tatctcgatt gccttaacat ttgataggaa
    1701  gcaagggac