Sequence of DPV Potato virus Y

Potato virus Y partial genomic RNA for polyprotein gene, isolate v97005

ACC No: AJ390303

Dated: 2000-08-29 | Length: 1201 | CRC: -821187036

                !!NA_SEQUENCE 1.0
ID   PVI390303  standard; RNA; VRL; 1201 BP.
XX
AC   AJ390303;
XX
SV   AJ390303.1
XX
DT   29-AUG-2000 (Rel. 64, Created)
DT   29-AUG-2000 (Rel. 64, Last updated, Version 1)
XX
DE   Potato virus Y partial genomic RNA for polyprotein gene, isolate v97005
XX
KW   coat protein; cp gene; NIb gene; NIb replicase; polyprotein.
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1201
RA   Boonham N.;
RT   ;
RL   Submitted (01-NOV-1999) to the EMBL/GenBank/DDBJ databases.
RL   Boonham N., Plant Health, CSL, Sand Hutton, YO41 1LZ, UNITED KINGDOM.
XX
RN   [2]
RA   Boonham N., Walsh K., Hims M., North J., Barker I.;
RT   "Sequence comparisons within the PVY coat protein highlight a distinct
RT   group of recombinant isolates (PVYNTN) associated with potato tuber
RT   necrotic ringspot disease (PTNRD).";
RL   Unpublished.
XX
DR   SPTREMBL; Q9EAC0; Q9EAC0.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1201
FT                   /country="United Kingdom"
FT                   /db_xref="taxon:12216"
FT                   /virion
FT                   /organism="Potato virus Y"
FT                   /strain="N"
FT                   /isolate="v97005"
FT   CDS             <1. .875
FT                   /codon_start=3
FT                   /db_xref="SPTREMBL:Q9EAC0"
FT                   /product="polyprotein"
FT                   /protein_id="CAC05615.1"
FT                   /translation="AFTEMMVALDDEFECDTYEVHHQGNDTIDAGGSTKKDAKQEQGSI
FT                   QPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDIS
FT                   NTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQ
FT                   VEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYA
FT                   FDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSM
FT                   HTLLGVKNM"
FT   mat_peptide     <1. .71
FT                   /gene="NIb"
FT                   /product="NIb replicase"
FT   mat_peptide     72. .875
FT                   /gene="CP"
FT                   /product="coat protein"
FT   3'UTR           876. .>1201
XX
SQ   Sequence 1201 BP; 372 A; 212 C; 286 G; 331 T; 0 other;

AJ390303  Length: 1201  December 21, 2001 15:41  Type: N  Check: 8933  ..

       1  tagctttcac tgaaatgatg gttgccttgg atgacgaatt tgagtgcgat
      51  acttatgaag tgcaccatca aggaaatgac acaatcgatg caggaggaag
     101  cactaagaag gatgcaaaac aagagcaagg tagcattcaa ccaaatctca
     151  acaaggaaaa ggaaaaggac gtgaatgttg gaacatctgg aactcatact
     201  gtgccacgaa ttaaagctat cacgtccaaa atgagaatgc ccaagagtaa
     251  aggtgcaact gtactaaatt tggaacactt actcgagtat gctccacagc
     301  aaattgacat ctcaaacact cgagcaactc aatcacagtt tgatacgtgg
     351  tatgaagcag tacaacttgc atacgacata ggagaaactg aaatgccaac
     401  tgtgatgaat gggcttatgg tttggtgcat tgaaaatgga acctcgccaa
     451  acatcaacgg agtttgggtt atgatggatg gagatgaaca agtcgaatac
     501  ccactgaaac caatcgttga gaatgcaaaa ccaacactta ggcaaatcat
     551  ggcacatttc tcagatgttg cagaagcgta tatagaaatg cgcaacaaaa
     601  aggaaccata tatgccacga tatggtttag ttcgtaatct gcgcgatgga
     651  agtttggctc gctatgcttt tgacttttat gaagttacat cacggacacc
     701  agtgagggct agagaggcac acattcaaat gaaggccgca gctttaaaat
     751  cagctcaatc tcgacttttc ggattggatg gtggcattag tacacaagag
     801  gaaaacacag agaggcacac caccgaggat gtttctccaa gtatgcatac
     851  tctacttgga gtgaagaaca tgtgattgta gtgtctttcc ggacgatata
     901  tagatattta tgtttgcagt aagtattttg gcttttcctg tactactttt
     951  atcgaaatta ataatcgttt gaatattact ggcagatagg ggtggtatag
    1001  cgattccgtc gttgtagtga ccttagctgt cgtttctgta ttattatgtt
    1051  tgtataaaag tgccgggttg ttgttgttgt ggctgatctg tcgattaggt
    1101  gatgttgcga tttgtcgtag cagtgactat gtctggattt agttacttgg
    1151  gtgatgctgt gattctgtca tagcagtgac tgtaaacttc aatcaggaga
    1201  c