Sequence of DPV Potato virus Y

Potato virus Y partial genomic RNA for polyprotein gene, isolate O-Des

ACC No: AJ390305

Dated: 2000-08-29 | Length: 1203 | CRC: 47416332

                !!NA_SEQUENCE 1.0
ID   PVI390305  standard; RNA; VRL; 1203 BP.
XX
AC   AJ390305;
XX
SV   AJ390305.1
XX
DT   29-AUG-2000 (Rel. 64, Created)
DT   29-AUG-2000 (Rel. 64, Last updated, Version 1)
XX
DE   Potato virus Y partial genomic RNA for polyprotein gene, isolate O-Des
XX
KW   coat protein; cp gene; NIb gene; NIb replicase; polyprotein.
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1203
RA   Boonham N.;
RT   ;
RL   Submitted (01-NOV-1999) to the EMBL/GenBank/DDBJ databases.
RL   Boonham N., Plant Health, CSL, Sand Hutton, YO41 1LZ, UNITED KINGDOM.
XX
RN   [2]
RA   Boonham N., Walsh K., Hims M., North J., Barker I.;
RT   "Sequence comparisons within the PVY coat protein highlight a distinct
RT   group of recombinant isolates (PVYNTN) associated with potato tuber
RT   necrotic ringspot disease (PTNRD).";
RL   Unpublished.
XX
DR   SPTREMBL; Q9EAB8; Q9EAB8.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1203
FT                   /country="United Kingdom"
FT                   /db_xref="taxon:12216"
FT                   /virion
FT                   /organism="Potato virus Y"
FT                   /strain="O"
FT                   /isolate="O-Des"
FT   CDS             <1. .875
FT                   /codon_start=3
FT                   /db_xref="SPTREMBL:Q9EAB8"
FT                   /product="polyprotein"
FT                   /protein_id="CAC05617.1"
FT                   /translation="AFTEMMVALDDEFEFDSYEVHHQANDTIDAGGSSKKDARPEQGSI
FT                   QSNLNKGKDKDVNAGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDIS
FT                   NTRATQSQFDTWYEAVRMAYDIGETEMPTVMNGLMVWCIENGTSPNVNGVWVMTDGNEQ
FT                   VEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLIRNLRDVGLARYA
FT                   FDFYEVTSRTPVRAREAHIQMKAAALKSAQPRLFGLDGGISTQEENTERHTTEDVSPSM
FT                   HTLLGVKNM"
FT   mat_peptide     <1. .71
FT                   /gene="NIb"
FT                   /product="NIb replicase"
FT   mat_peptide     72. .875
FT                   /gene="CP"
FT                   /product="coat protein"
FT   3'UTR           876. .>1203
XX
SQ   Sequence 1203 BP; 369 A; 219 C; 295 G; 320 T; 0 other;

AJ390305  Length: 1203  December 21, 2001 15:41  Type: N  Check: 1118  ..

       1  tagctttcac tgaaatgatg gtcgcattag atgatgagtt tgagtttgac
      51  tcttatgaag tacaccatca agcaaatgac acaattgatg caggaggaag
     101  cagtaagaaa gatgcaagac cagagcaagg cagcatccag tcaaacctga
     151  acaaaggaaa agataaggat gtgaatgctg gtacatctgg gacacatact
     201  gtgccgagaa tcaaggctat cacgtccaaa atgagaatgc ccaaaagcaa
     251  gggagcaacc gtgctaaact tagaacactt gcttgagtat gctccacaac
     301  aaattgatat ttcaaatact cgggcaactc aatcacagtt tgatacgtgg
     351  tatgaggcag tgcggatggc atacgacata ggagaaactg agatgccaac
     401  tgtgatgaat gggcttatgg tttggtgcat tgaaaatgga acctcgccaa
     451  atgtcaacgg agtttgggtt atgacggatg ggaatgaaca agttgagtac
     501  ccgttgaaac caatcgttga gaatgcaaaa ccaaccctta ggcaaattat
     551  ggcacatttc tcagatgttg cagaagcgta tatagaaatg cgcaacaaaa
     601  aggaaccata tatgccacga tatggtttaa ttcgaaatct gcgggatgtg
     651  ggtttagcgc gctatgcctt tgacttttat gaggtcacat cacgaacacc
     701  agtgagggct agggaagcgc acattcaaat gaaggccgca gcattgaaat
     751  cagcccaacc tcgacttttc gggttggacg gtggcatcag tacacaagag
     801  gagaacacag agaggcacac caccgaggat gtctctccaa gtatgcatac
     851  tctacttgga gtcaagaaca tgtgatgtag tgtctctccg gacgatatat
     901  aagtatttac atatgcagta agtattttgg cttttcctgt actactttta
     951  tcataattaa taatcagttt gaatattact aatagataga ggtggcaggg
    1001  tgatttcgtc attgtggtga ctctatcttt taattccgca ttattaagtc
    1051  ttagataaaa gtgccgggtt gtcgttgttg tggatgattc atcgattagg
    1101  tgatgttgcg attctgtcgt agcagtgact atgtctggat ctatctgctt
    1151  gggtggtgtt gtgatttcgt cataacagtg actgtaaact tcaatcagga
    1201  gac