Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus-[Almeria] complete genome, isolate Almeria
ACC No: AJ489258
Dated: 2009-04-21 | Length: 2781 | CRC: -116965906
ID AJ489258; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
XX
AC AJ489258;
XX
DT 07-JUN-2002 (Rel. 72, Created)
DT 21-APR-2009 (Rel. 100, Last updated, Version 4)
XX
DE Tomato yellow leaf curl virus-[Almeria] complete genome, isolate Almeria
XX
KW c2 gene; C2 protein; c3 gene; C3 protein; c4 gene; C4 protein;
KW coat protein; cp gene; precoat protein; rep gene;
KW replication-associated protein; v2 gene.
XX
OS Tomato yellow leaf curl virus-[Almeria]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2781
RA Morilla G.;
RT ;
RL Submitted (04-JUN-2002) to the EMBL/GenBank/DDBJ databases.
RL Morilla G., Departamento de Genetica, Universidad de Malaga, 29071, Malaga,
RL SPAIN.
XX
RN [2]
RX DOI; 10.1094/PHYTO-95-1089.
RX PUBMED; 18943307.
RA Morilla G., Janssen D., Garcia-Andres S., Moriones E., Cuadrado I.M.,
RA Bejarano E.R.;
RT "Pepper (Capsicum annuum) Is a Dead-End Host for Tomato yellow leaf curl
RT virus";
RL Phytopathology 95(9):1089-1097(2005).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2781
FT /organism="Tomato yellow leaf curl virus-[Almeria]"
FT /host="Capsicum anuum"
FT /isolate="Almeria"
FT /mol_type="genomic DNA"
FT /country="Spain:Almeria"
FT /db_xref="taxon:220938"
FT CDS 155. .505
FT /gene="v2"
FT /product="precoat protein"
FT /function="movement"
FT /db_xref="GOA:Q777L1"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q777L1"
FT /protein_id="CAD33247.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PKAQNIQNVSKP"
FT CDS 315. .1091
FT /gene="cp"
FT /product="coat protein"
FT /function="coat protein"
FT /db_xref="GOA:Q8JJU0"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q8JJU0"
FT /protein_id="CAD33248.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYVTMKIRIYFYDSISN"
FT CDS complement(1088. .1492)
FT /gene="c3"
FT /product="C3 protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q8JJT9"
FT /protein_id="CAD33249.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGHFLRVFRYEVLKYLDSLGVISINN
FT VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT CDS complement(1233. .1640)
FT /gene="c2"
FT /product="C2 protein"
FT /db_xref="GOA:Q8JJT8"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:Q8JJT8"
FT /protein_id="CAD33250.1"
FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL
FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPAAISNEPRHHFHSDKIQPQ
FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI"
FT CDS complement(1549. .2622)
FT /gene="rep"
FT /product="replication-associated protein"
FT /db_xref="GOA:Q8JJT7"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q8JJT7"
FT /protein_id="CAD33251.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC
FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGNKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPNSIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA
FT SINQGPTQDSQEETNKA"
FT CDS complement(2178. .2471)
FT /gene="c4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q8JJT6"
FT /protein_id="CAD33252.1"
FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTDQHISIRTFRQLRAQ
FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAINPRPSIY"
XX
SQ Sequence 2781 BP; 763 A; 535 C; 604 G; 879 T; 0 other;
aj489258 Length: 2781 21-APR-2009 Type: N Check: 4426 ..
1 taatattacc ggatggccgc gccttttcct tttatgtggt ccccacgagg
51 gttccacaga cgtcactgtc aaccaatcaa attgcatact caaacgttaa
101 ataagtgttc atttgtcttt atatacttgg tccccaagta ttttgtcttg
151 caatatgtgg gacccacttc taaatgaatt tcctgaatct gttcacggat
201 ttcgttgtat gttagctatt aaatatttgc agtccgttga ggaaacttac
251 gagcccaata cattgggcca cgatttaatt agggatctta tatctgttgt
301 aagggcccgt gactatgtcg aagcgaccag gcgatataat catttccacg
351 cccgtctcga aggttcgccg aaggctgaac ttcgacagcc catacagcag
401 ccgtgctgct gtccccattg tccaaggcac aaacaagcga cgatcatgga
451 cgtacaggcc catgtaccga aagcccagaa tatacagaat gtatcgaagc
501 cctgatgttc cccgtggatg tgaaggccca tgtaaagtcc agtcttatga
551 gcaacgggat gatattaagc acactggtat tgttcgttgt gttagtgatg
601 ttactcgtgg atctggaatt actcacagag tgggtaagag gttctgtgtt
651 aaatcgatat attttttagg taaagtctgg atggatgaaa atatcaagaa
701 gcagaatcac actaatcagg tcatgttctt tttggtccgt gatagaaggc
751 cctatggaag cagcccaatg gattttggac aggtttttaa tatgttcgat
801 aatgagccca gtaccgcaac cgtgaagaat gatttgcgtg ataggtttca
851 agtgatgaga aaatttcatg caacagttat tggtgggccc tctggaatga
901 aggaacaggc attagttaag agatttttta aaattaacag tcatgtaact
951 tataatcatc aggaggcagc caagtacgag aaccatactg aaaacgcctt
1001 gttattgtat atggcatgta cgcatgcctc taatccagtg tatgtaacta
1051 tgaaaatacg catctatttc tatgattcaa tatcaaatta ataaaattta
1101 tattttatat catgagtttc tgttacattt attgtgtttt caagtacatc
1151 atacaataca tgatcaactg ctctgattac attgttaatg gaaattacac
1201 caagactatc taaatactta agaacttcat atctaaatac tcttaagaaa
1251 tgaccagtct gaggctgtaa tgtcgtccaa attcggaagt tgagaaaaca
1301 tttgtgaatc cccattacct tcctgatgtt gtggttgaat cttatctgaa
1351 tggaaatgat gtcgtggttc attagaaatg gccgctggct gtgttctgtt
1401 atcttgaaat agaggggatt gtttatctcc caaataaaaa cgccattctc
1451 tgcctgagga gcagtgatga gttcccctgt gcgtgaatcc atgattgttg
1501 cagttgaggt ggaggtagta tgagcagcca cagtctaggt ctacacgctt
1551 acgccttatt ggtttcttct tggctatctt gtgttggacc ttgattgata
1601 cttgcgaaca gtggctcgta gagggtgacg aaggttgcat tcttgagcgc
1651 ccaatttttc aaggatatat ttttttcttc gtctagatat tccctatatg
1701 aggaggtagg tcctggattg cagaggaaga tagtgggaat tcccccttta
1751 atttgaatgg gcttcccgta ctttgtgttg ctttgccagt ccctctgggc
1801 ccccatgaat tccttgaagt gctttaaata atgcgggtct acgtcatcaa
1851 tgacgttgta ccacgcatca ttactgtaca cctttgggct taggtctaga
1901 tgtccacata aataattatg tgggcctaga gacctggccc acattgtttt
1951 gcctgttctg ctatcaccct caatgacaat actattaggt ctccatggcc
2001 gcgcagcgga agacacgacg ttctcagcga cccactcttc aagttcatct
2051 ggaacttgat taaaagaaga agaaagaaat ggagaaacat aaacttctaa
2101 aggaggacta aaaatcctat ctaaatttga acttaaatta tgaaattgta
2151 aaatatagtc ctttggggcc ttctctttta atatattgag ggcctcggat
2201 ttattgcctg aattgagtgc ttcggcatat gcgtcgttgg cagattgctg
2251 acctcctcta gctgatctgc catcgatttg gaaaactcca aaatcaatga
2301 agtctccgtc tttctccacg taggtcttga catctgttga gctcttagct
2351 gcctgaatgt tcggatggaa atgtgctgat ctgtttgggg ataccaggtc
2401 gaagaaccgt tggttcttac attggtattt gccttcgaat tggataagca
2451 catggagatg tggttcccca ttctcgtgga gttctctgca aactttgatg
2501 tattttttat ttgttggggt ttctaggttt tttaattggg aaagtgcttc
2551 ctctttagag agagaacaat tgggatatgt taggaaataa tttttggcat
2601 atattttaaa taaacgaggc atgttgaaat gaatcggtgt ccctcaaagc
2651 tctatggcaa tcggtgtatc ggtgtcttat ttatacctgg acacctaatg
2701 gctatttggt aatttcgtaa aagtacattg caattcaaaa ttcaaaattc
2751 aaaaatcaaa tcattaaagc ggccatccgt a