Sequence of DPV Sugarcane yellow leaf virus
Sugarcane yellow leaf virus gene for capsid protein (partial), gene for movement protein and gene for aphid transmission factor (partial), genomic RNA, isolate USA2
ACC No: AJ491260
Dated: 2003-08-01 | Length: 672 | CRC: 530998626
!!NA_SEQUENCE 1.0
ID SYE491260 standard; RNA; VRL; 672 BP.
XX
AC AJ491260;
XX
SV AJ491260.1
XX
DT 01-AUG-2003 (Rel. 76, Created)
DT 01-AUG-2003 (Rel. 76, Last updated, Version 1)
XX
DE Sugarcane yellow leaf virus gene for capsid protein (partial), gene for
DE movement protein and gene for aphid transmission factor (partial), genomic
DE RNA, isolate USA2
XX
KW aphid transmission factor; capsid protein; movement protein; ORF3; ORF4;
KW ORF5.
XX
OS Sugarcane yellow leaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Unassigned Luteoviridae.
XX
RN [1]
RP 1-672
RA Borg Z.;
RT ;
RL Submitted (21-JUN-2002) to the EMBL/GenBank/DDBJ databases.
RL Borg Z., Biotechnology, Bureau of Sugar Experiment Stations, PO Box 86,
RL Indooroopilly, Queensland 4068, AUSTRALIA.
XX
RN [2]
RA Borg Z., Braithwaite K.S., Smith G.R.;
RT "Sequence variation in isolates of Sugarcane yellow leaf virus";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .672
FT /country="USA"
FT /db_xref="taxon:94290"
FT /mol_type="mRNA"
FT /virion
FT /organism="Sugarcane yellow leaf virus"
FT /specific_host="Saccharum hybrid cultivar CP88-1409"
FT /isolate="USA2"
FT CDS <1. .570
FT /codon_start=1
FT /note="ORF3"
FT /product="capsid protein"
FT /protein_id="CAD36141.1"
FT /translation="SRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVGGNAVRGP
FT GGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSLTIQYNSC
FT SSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPLIRGKDFMTTSADQFWL
FT LYKGNGDSSLAGQFVCRFECLFQNPK"
FT CDS 11. .463
FT /note="ORF4"
FT /product="movement protein"
FT /protein_id="CAD36142.1"
FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT
FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS"
FT CDS <1. .>672
FT /note="ORF5"
FT /note="occassional readthrough of TAG stop codon"
FT /transl_except=(pos:568. .570,aa:OTHER)
FT /product="aphid transmission factor"
FT /protein_id="CAD36143.2"
FT /translation="SRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVGGNAVRGP
FT GGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSLTIQYNSC
FT SSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPLIRGKDFMTTSADQFWL
FT LYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPAPKYFGYQGVP
FT NN"
XX
SQ Sequence 672 BP; 186 A; 202 C; 155 G; 129 T; 0 other;
AJ491260 Length: 672 August 12, 2003 09:38 Type: N Check: 7180 ..
1 tcacgaagga atgtcagaag acgcgctaac cgtcgtagac agactcggcc
51 agtggtcgtg gtccgggctc ccccaggacc tagacgagta cgacgacgta
101 gagcacgtgt tggaggaaac gctgtgcgag gaccgggagg aagaagcaac
151 cgggatgttc tcactttcac ggttgacgat ctcaaagcca actcaaccgg
201 gatcctcaaa ttcggaccga acttatctca gtacgcagcg ttcaacaatg
251 gcttactcaa agcctaccat gagtataaaa tcacaagtct cactattcag
301 tataactcat gctcctccga cgcaactcca ggtgcaatcg cacttgaagt
351 ggatacatcc tgctcccaaa caacaacagg ctccaagatt actagcttcc
401 ccgtcaagag gaacgccaag aaagtcttcc cggcccccct catcaggggg
451 aaagatttca tgactacgtc agctgaccag ttttggttgc tgtacaaagg
501 gaatggagac tcgagcctag caggacaatt cgtctgccga tttgaatgcc
551 ttttccagaa tcccaaatag gtaggcgacg ctcccccaac acccacccca
601 acaccaaccc cacctgctcc gaccccggca ccggctccca agtattttgg
651 ataccaagga gtgccgaaca ac