Sequence of DPV Tomato leaf curl Sinaloa virus
Sinaloa tomato leaf curl virus AV1 gene, AC3 gene (partial) and AC2 gene (partial), isolate NI3
ACC No: AJ508781
Dated: 2005-06-27 | Length: 1134 | CRC: 189976386
!!NA_SEQUENCE 1.0
ID TLE508781 standard; genomic DNA; VRL; 1134 BP.
XX
AC AJ508781;
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SV AJ508781.1
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DT 24-SEP-2004 (Rel. 81, Created)
DT 27-JUN-2005 (Rel. 84, Last updated, Version 2)
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DE Sinaloa tomato leaf curl virus AV1 gene, AC3 gene (partial) and AC2 gene
DE (partial), isolate NI3
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KW AC2 gene; AC3 gene; AV1 gene; coat protein; replication enhancer;
KW transcriptional activator.
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OS Tomato leaf curl Sinaloa virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-1134
RA Kvarnheden A.;
RT ;
RL Submitted (24-SEP-2002) to the EMBL/GenBank/DDBJ databases.
RL Kvarnheden A., Dept of Plant Biology, Swedish Univ of Agricultural
RL Sciences, P.O. Box 7080, SE-750 07 Uppsala, SWEDEN.
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RN [2]
RA Rojas A., Kvarnheden A., Marcenaro D., Valkonen J.P.T.;
RT "Sequence characterization of Tomato leaf curl Sinaloa virus and
RT Tomatosevere leaf curl virus: Phylogeny of New World begomoviruses and
RT detectionof recombination";
RL Arch. Virol. 150(7):1281-1299(2005).
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FH Key Location/Qualifiers
FH
FT source 1. .1134
FT /country="Nicaragua:Sebaco"
FT /db_xref="taxon:71186"
FT /mol_type="genomic DNA"
FT /note="component A"
FT /virion
FT /organism="Tomato leaf curl Sinaloa virus"
FT /isolate="NI3"
FT /specific_host="Lycopersicon esculentum"
FT CDS 200. .955
FT /db_xref="GOA:Q65CG9"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProt/TrEMBL:Q65CG9"
FT /transl_table=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="CAD48521.1"
FT /translation="MPKRDAPWRSFAATSKVSRNANYSPRAGMGPKVDKATAWVNRPMY
FT RKPRIYRVMRGPDVPKGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGLTHRVGKRF
FT CVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGIPMDFGQVFNMFDNEPSTATI
FT KNDLRDRFQVMHGFYAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYDNHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSIAN"
FT CDS complement(952. .>1134)
FT /codon_start=1
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProt/TrEMBL:Q65CG8"
FT /transl_table=1
FT /gene="AC3"
FT /product="replication enhancer"
FT /protein_id="CAD48522.1"
FT /translation="TLITASGSNYLARFRHLVNMYLDQLGVISINNVIRAVRFATDRSY
FT VNYVLEDHSIKIKLY"
FT CDS complement(1097. .>1134)
FT /codon_start=3
FT /db_xref="UniProt/TrEMBL:Q65CG7"
FT /transl_table=1
FT /gene="AC2"
FT /product="transcriptional activator"
FT /protein_id="CAD48523.1"
FT /translation="IDNSFWVELFS"
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SQ Sequence 1134 BP; 312 A; 236 C; 259 G; 327 T; 0 other;
AJ508781 Length: 1134 July 5, 2005 08:55 Type: N Check: 5607 ..
1 tattacctga tggccgcgcg atttcccccc ccctacacgc gcgtacgctc
51 ctctttaatt tgaattaaag tgtattagtg cgctgtcgtc caatcatatt
101 gcgtctgacg agtctagata tttgcaacaa ctttgggccc aagttgttga
151 gtgtctgcta taaattaaag aggctttggc ccactgactt taactcaaaa
201 tgcctaagcg tgatgcccca tggcgctcgt tcgcggcaac ttccaaggtt
251 agtcgcaatg ctaattattc tccacgggct ggtatggggc caaaggtcga
301 caaggccact gcttgggtga ataggcccat gtatagaaag cccaggatct
351 accgggttat gagaggccca gatgttccaa aaggatgtga aggcccatgt
401 aaggtccagt catacgagca gcgccacgat atttcacatg ttgggaaggt
451 catgtgtatc tccgacgtga cacgtggtaa tggtctcacc caccgtgtgg
501 ggaagcgttt ttgtgttaag tccgtgtata ttctcggcaa ggtttggatg
551 gatgataaca tcaagttgaa gaaccacacg aacagtgtta tgttttggct
601 ggtcagggac cgtaggcctt atggtattcc tatggatttc ggacaagtgt
651 ttaacatgtt cgataacgaa cccagtaccg cgacgatcaa gaacgatctt
701 agagatcggt ttcaggtcat gcacgggttt tatgctaagg ttacaggtgg
751 acagtatgct agcaacgagc aagctatagt gaggcgtttt tggaaggtca
801 acaatcatgt ggtctacaat catcaagagg caggaaaata tgacaaccat
851 actgagaacg ccctgttatt gtatatggca tgtactcatg cttctaaccc
901 cgtgtatgca acattgaaaa ttcggatcta tttttatgat tcgattgcta
951 attaataaag ttttattttt attgaatgat cttcaagtac ataatttaca
1001 tatgatctgt ctgttgcaaa acgaacagct ctgattacat tgtttatcga
1051 aatcacacct aactgatcta aatacatatt aactaaatgt ctaaacctag
1101 ctaaataatt cgacccagaa gctgttatca atgt