Sequence of DPV Tomato yellow leaf curl Thailand virus

Tomato geminivirus AV2 gene, AV1 gene and AC1 gene (partial), isolate Y73

ACC No: AJ514321

Dated: 2005-04-15 | Length: 1409 | CRC: -600783067

                !!NA_SEQUENCE 1.0
ID   BEG514321  standard; genomic DNA; VRL; 1409 BP.
XX
AC   AJ514321;
XX
SV   AJ514321.1
XX
DT   29-OCT-2002 (Rel. 73, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Tomato geminivirus AV2 gene, AV1 gene and AC1 gene (partial), isolate Y73
XX
KW   AC1 gene; AV1 gene; AV2 gene; coat protein; pre-coat protein; rep protein.
XX
OS   Tomato geminivirus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1409
RA   Zhou X.;
RT   ;
RL   Submitted (26-OCT-2002) to the EMBL/GenBank/DDBJ databases.
RL   Zhou X., Zhejiang University, Institute of Biotechnology, Kaixuan Road
RL   268,HangZhou, Zhejiang,310029, CHINA.
XX
RN   [2]
RX   DOI; 10.1007/s00705-004-0334-7.
RX   PUBMED; 15593415.
RA   Li Z., Zhou X., Zhang X., Xie Y.;
RT   "Molecular characterization of tomato-infecting begomoviruses in Yunnan,
RT   China.";
RL   Arch. Virol. 149(9):1721-1732(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1409
FT                   /db_xref="taxon:32610"
FT                   /mol_type="genomic DNA"
FT                   /virion
FT                   /organism="Tomato geminivirus"
FT                   /isolate="Y73"
FT                   /specific_host="Lycopersicon esculentum"
FT   CDS             complement(<1. .107)
FT                   /db_xref="GOA:Q8B8P2"
FT                   /db_xref="HSSP:1L5I"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="UniProt/TrEMBL:Q8B8P2"
FT                   /gene="AC1"
FT                   /product="rep protein"
FT                   /protein_id="CAD55746.1"
FT                   /translation="MPPSKKFLINAKNYFLTYPHCSLTKEEALSQILNLS"
FT   CDS             390. .728
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProt/TrEMBL:Q8B8P1"
FT                   /gene="AV2"
FT                   /product="pre-coat protein"
FT                   /protein_id="CAD55747.1"
FT                   /translation="MWDPLLNEFPENVHGFRCMLAVKYLQAVEKTYSPDTLGFDLIRDL
FT                   ISVIRAKNYVEASSRYSHFHSRLESTSPSELRQPIQQPCCCPHCPRHKRADMEEPTCIQ
FT                   KAQDLQNV"
FT   CDS             550. .1320
FT                   /db_xref="GOA:Q776Y3"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProt/TrEMBL:Q776Y3"
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /protein_id="CAD55748.1"
FT                   /translation="MSKRPADILISTPVSKVRRRLNFDSPYNSRAAVPTVRVTKGQIWK
FT                   NRPAYRKPRIYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR
FT                   VGKRFCVKSLYFVGKIWMDENIKVKNHTNTVLFWIVRDRRPTGTPYDFQQVFNVYDNEP
FT                   STATVKNDQRDRFQVIRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH
FT                   TENALLLYMACTHASNPVYATLKVRSYFYDSVTN"
XX
SQ   Sequence 1409 BP; 397 A; 278 C; 313 G; 421 T; 0 other;

 AJ514321  Length: 1409  April 19, 2005 08:56  Type: N  Check: 2593  ..

       1  gaaagattta atatttggga aagtgcttcc tctttggtga gtgagcagtg
      51  tgggtatgtg aggaaataat tcttggcatt tattaaaaat ttctttgaag
     101  gaggcatgtt gacctggtca atcgggtcct ctcaaacttg gctatgcaat
     151  cggggaatgg gtccttattt atagttgagg acctaaatgg cataattgta
     201  aataagtata ttaaattcaa aattcaaaat ttaatcgcgg ccatccgtat
     251  aatattaccg gatggccgcg atttttttaa agtggtcccc ttgatgtgat
     301  gtctcatcca ataagaacgc tccctcaaag cttaattatt tatggtcccc
     351  tatataagtc ttggtcccta agtttcgtgg aatttcaaaa tgtgggatcc
     401  actcctaaac gaatttccag aaaacgtcca cggttttcgt tgtatgctag
     451  ccgtgaagta tctgcaagcg gtcgagaaga cttattcccc tgatacccta
     501  gggtttgatc tcatccgtga tctcatcagt gtaattcgtg caaagaatta
     551  tgtcgaagcg tccagcagat attctcattt ccactcccgt ctcgaaagta
     601  cgtcgccgtc tgaacttcga cagcccatac aacagccgtg ctgctgtccc
     651  cactgtccgc gtcacaaaag ggcagatatg gaagaaccga cctgcataca
     701  gaaagcccag gatctacaga atgtatagaa gccctgatgt ccctaaggga
     751  tgtgaaggcc cctgtaaggt ccaatctttc gatgcgaaga acgacattgg
     801  gcatatgggt aaggtgatct gcttgtctga cgttactcgt ggtattgggc
     851  ttacccatcg agttggcaag cggttctgtg tcaagtcact ttatttcgtt
     901  ggcaagatat ggatggatga aaatattaag gttaagaatc acactaacac
     951  cgttttgttc tggatagtta gagatcgacg tcctactgga acgccgtatg
    1001  attttcagca ggtttttaat gtttatgata atgagccttc cacggcaact
    1051  gtgaaaaacg accagcgtga tcgtttccag gtgatcagga gattccaggc
    1101  aacggtgacc ggtggacaat atgcagcgaa ggagcaggcg attattagaa
    1151  agttttatcg tgttaataat tatgtagtgt ataatcacca ggaagctggg
    1201  aagtatgaga accatactga aaatgccttg ttattgtata tggcatgtac
    1251  ccatgcctct aatcccgtgt atgctacttt gaaagtcagg agttatttct
    1301  atgactcagt gacgaattaa taaatattaa atattatatc atgtgcttca
    1351  aatacatcaa ttgttccttc taatacattg taccatacat gagatattgc
    1401  cctaattac