Sequence of DPV East African cassava mosaic Zanzibar virus
East African cassava mosaic Zanzibar virus - Kenya [Kilifi] AV2 gene, AV1 gene, AC3 gene, AC2 gene, AC1 gene and AC4 gene
ACC No: AJ516003
Dated: 2005-09-12 | Length: 2784 | CRC: -1533928863
!!NA_SEQUENCE 1.0
ID EAF516003 standard; circular genomic DNA; VRL; 2784 BP.
XX
AC AJ516003;
XX
SV AJ516003.1
XX
DT 15-NOV-2002 (Rel. 73, Created)
DT 12-SEP-2005 (Rel. 85, Last updated, Version 4)
XX
DE East African cassava mosaic Zanzibar virus - Kenya [Kilifi] AV2 gene, AV1
DE gene, AC3 gene, AC2 gene, AC1 gene and AC4 gene
XX
KW AC1 gene; AC2 gene; AC3 gene; AC4 gene; AV1 gene; AV2 gene; coat protein;
KW pre coat protein; replication enhancer protein;
KW replicaton initiation protein; transcriptional activator protein;
KW transcriptional regulator protein.
XX
OS East African cassava mosaic Zanzibar virus - Kenya [Kilifi]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2784
RA Winter S.;
RT ;
RL Submitted (13-NOV-2002) to the EMBL/GenBank/DDBJ databases.
RL Winter S., Plant Virus Division, DSMZ, Messeweg 11/12, Braunschweig 38104,
RL GERMANY.
XX
RN [2]
RA Were H.K., Winter S., Maiss E.;
RT "Characterisation of a strain of EACMZV from the coastal region of
RT KenyaOccurrence and distribution of cassava begomoviruses in Kenya";
RL Ann. Appl. Biol. 145(10):175-184(2004).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2784
FT /country="Kenya:Kilifi"
FT /db_xref="taxon:268969"
FT /mol_type="genomic DNA"
FT /note="collected in May 1999"
FT /virion
FT /organism="East African cassava mosaic Zanzibar virus -
FT Kenya [Kilifi]"
FT /isolation_source="cassava plant"
FT CDS 173. .529
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q8B8N2"
FT /gene="AV2"
FT /product="pre coat protein"
FT /protein_id="CAD56699.1"
FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKSYVEATRRYNNLSTRIQGAEEAELRQPIHEPCGCPHCPRHQKQTMGQQAHVP
FT EAQDVQNVSKPRCP"
FT CDS 333. .1106
FT /db_xref="GOA:Q8B8N1"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q8B8N1"
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="CAD56700.1"
FT /translation="MSKRPGDIIISAPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKLWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR
FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE
FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT CDS complement(1103. .1507)
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q8B8N0"
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="CAD56701.1"
FT /translation="MDSRTGELITAPQATNGVFTWEITNPLYFAITNHDKRPGNMNHDI
FT ITIQIRFNHNIRKALGIHKCFLNFKVWTTLRPQTGLFLRVFRSQVLKYLDMIGVISINT
FT VLQSVDHVLYDVLLNTLQVTEQHAITFNLY"
FT CDS complement(1248. .1655)
FT /db_xref="GOA:Q8B8M9"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:Q8B8M9"
FT /gene="AC2"
FT /product="transcriptional activator protein"
FT /protein_id="CAD56702.1"
FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRAIRRRRVDLECGCSFYIHI
FT NCINHGFSHRGTHHCASSNEWRFYLGNNKSPIFRNHQPRQEAREHEPRHHHNPDTVQPQ
FT HPEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT CDS complement(1564. .2643)
FT /db_xref="GOA:Q8B8M8"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q8B8M8"
FT /gene="AC1"
FT /product="replicaton initiation protein"
FT /protein_id="CAD56703.1"
FT /translation="MTPPKRFKIQAKNYFLTYPKCSLSKHDALSQILNIPTPTNKKYIK
FT VCRELHDDGQPHLHMLIQFEGKFSCTNKRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYI
FT DKDGDTTEWGEFQIDARSARGGCHNANDACAEALNSGSKAAALLIIKEKLPKEFIFQYH
FT NLSSNLDKIFQEPPAPYVSPFLSYSFTNVPEELEVWVSENVMGSAARPWRPNSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFVTINEPL
FT FSSAHQSPTPHSEDQGHQT"
FT CDS complement(2229. .2486)
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q776Y2"
FT /gene="AC4"
FT /product="transcriptional regulator protein"
FT /protein_id="CAD56704.1"
FT /translation="MGNLISTCLFSSKANSHAQISDSSTWYPQHDQHISIRTFKELNPA
FT PTSSPTSTKMGIPLSGANSRSTPDRLEAAATMLMTHVPKH"
XX
SQ Sequence 2784 BP; 728 A; 546 C; 714 G; 796 T; 0 other;
AJ516003 Length: 2784 September 20, 2005 08:47 Type: N Check: 8962 ..
1 accggatggc cgcgcccgaa aaagaaggtg gaccccacgg atggccgcgc
51 ccatgaaaga aagtggtccc cgcgcacttg tttcggtcag ccagtcatat
101 tcacgcgtgg aagtctagat atttgttgtt tggctttata gacttcgtcg
151 cgaagtagtg gagcgcgtca acatgtggga tccattgtta aacgatttcc
201 ctgaaaccgt tcacggtttc cgttccatgc ttgctgttaa atacctgtta
251 catcttgaac aggaatacga tcgcggtact gtcggggctg agtatatacg
301 ggatctaata ggggtgctac ggtgtaagag ttatgtcgaa gcgaccagga
351 gatataataa tctcagcacc cgtatccaag gtgcggagga ggctgaactt
401 cgacagccca tacacgaacc gtgtggttgc ccccactgtc cgcgtcacca
451 gaagcaaact atgggccaac aggcccatgt accggaagcc caagatgtac
501 agaatgtatc gaagcccaga tgtccctaag ggctgtgaag gcccatgtaa
551 ggttcagtcg tatgaacaga gggatgatgt taagcacact ggtatggtcc
601 gatgtgtcag tgatgttact cgtgggtcag gcattaccca tagagtcggg
651 aagaggttct gtgtgaagtc catatatata ttgggcaaga tttggatgga
701 tgagaatatc aagaagcaga accatacgaa ccatgttatg tttttcctcg
751 tgcgagatag aaggccgtat ggtccgagtc cgcaagattt tggacaagtg
801 ttcaacatgt tcgataatga acctactact gcaactgtga agaatgatct
851 tagggaccgg tatcaggtgt tacgtaaatt ctatgcgact gttgtgggtg
901 gaccctctgg gatgaaggaa caagctctgg ttaagaggtt ttttaggatc
951 aataatcatg tagtgtataa tcatcaggaa caggccaagt atgagaatca
1001 tactgagaat gcgttgttat tgtatatggc atgtacacat gcctcaaatc
1051 ctgtgtatgc tactctgaaa atacgcatct atttctatga tgcagtgaca
1101 aattaataaa ggttgaatgt tattgcatgt tgctccgtaa cttggagcgt
1151 gtttagtaat acatcgtaca gaacatgatc aacagattga agtacagtgt
1201 taatggaaat aacgcctatc atatctaaat acttgagcac ttgagatcta
1251 aatactctta agaaaagacc agtctgaggc cgtaaggtcg tccagacctt
1301 gaagttgaga aaacacttgt gaatccccaa tgccttccgg atgttgtggt
1351 tgaaccgtat ctggattgtg atgatgtcgt ggttcatgtt ccctggcctc
1401 ttgtcgtggt tggtgattgc gaaatatagg ggatttgtta tttcccaggt
1451 aaaaacgcca ttcgttgctt gaggcgcagt gatgagttcc cctgtgcgag
1501 aatccatggt tgatgcagtt aatatggata tagaacgagc agccgcattc
1551 gaggtctacc cgcctacgtc tgatggccct ggtcttcgct gtgcggtgtt
1601 ggactttgat gggcacttga gaacaatggc tcgttgatgg tgacgaaggt
1651 ggcattcttt aaagcccagg ctttaaggga ctgattcttt tcctcatcca
1701 gaaactcttt atatgatgat gttggtcctg gattgcagag gaagatagtg
1751 ggaatgccgc ctttaatttg aattggcttc ccgtattttg tattgctttg
1801 ccagtcccgt tgggccccca tgaattcttt gaagtgcttt agatagtggg
1851 ggtcgacgtc atcaatgacg ttgtaccagg cgtcgttgct gtagaccttt
1901 ggactgagat ccaggtgtcc acacaaataa ttatgtggtc ccaatgacct
1951 ggcccacatt gtcttccctg tacgactatc accctcaata acaatactgt
2001 tgggtctcca aggccgcgca gcggaaccca tcacgttctc ggaaacccag
2051 acttcaagtt cctcaggaac gttagtaaaa gaataagaca gaaaaggaga
2101 aacataagga gctggtggct cttgaaaaat cttatctaaa ttactactta
2151 agttatgata ttgaaaaata aattcttttg ggagtttctc cttaataatt
2201 agaagtgctg ctgccttgga acctgagttt aatgcttcgg cacatgcgtc
2251 attagcattg tggcagccgc ctctagccga tctggcgtcg atctggaatt
2301 cgccccactc agtggtatcc ccatctttgt cgatgtagga cttgacgtcg
2351 gagctggatt tagctccttg aatgttcgga tggaaatgtg ttgatcgtgt
2401 tggggatacc aggtcgaaga atcgcttatt tgtgcatgag aatttgcctt
2451 cgaactgaat aagcatgtgg agatgaggtt gcccatcgtc gtgaagttct
2501 ctgcacactt tgatgtattt cttgtttgtg ggagttggga tgtttaatat
2551 ttgggataat gcgtcgtgtt tagatagaga acatttggga tatgtgagaa
2601 aatagttttt ggcctgtatt ttaaaacgct tggggggagt catttatgcg
2651 agagcaattg gagacacctc ggtggatgtc tctacggaat tggagacaat
2701 atatagtgtc tctaaatggc ataatggtaa ttaggaagat ctattttcaa
2751 aatttgaacc aaaagcggcc atccgtataa tatt